Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G052500 Populus trichocarpa HOM05D003870 ORTHO05D004567 2.2e-76 288.9 145 100.0
Sabra03G0026800 Salix brachista HOM05D003870 ORTHO05D004567 1.3e-73 279.6 145 96.6
Manes.11G038100 Manihot esculenta HOM05D003870 ORTHO05D004567 2.3e-73 278.9 145 94.5
Dinv38024 Davidia involucrata HOM05D003870 ORTHO05D004567 1.2e-71 273.1 145 92.4
Manes.04G129900 Manihot esculenta HOM05D003870 ORTHO05D004567 1.2e-71 273.1 145 93.1
PGR102G1204 Punica granatum HOM05D003870 ORTHO05D004567 8.0e-71 270.4 145 91.7
Ciclev10026722m.g Citrus clementina HOM05D003870 ORTHO05D004567 2.3e-70 268.9 145 92.4
CiPaw.01G235900 Carya illinoinensis HOM05D003870 ORTHO05D004567 1.5e-69 266.2 145 92.4
CANSAT56G1465 Cannabis sativa HOM05D003870 ORTHO05D004567 5.8e-69 264.2 145 90.3
Glyma.07G019700 Glycine max HOM05D003870 ORTHO05D004567 7.5e-69 263.8 145 91.0
Cfa002093 Carpinus fangiana HOM05D003870 ORTHO05D004567 1.7e-68 262.7 145 91.0
Haze_16364 Corylus avellana HOM05D003870 ORTHO05D004567 1.7e-68 262.7 145 91.0
Eucgr.F03038 Eucalyptus grandis HOM05D003870 ORTHO05D004567 2.2e-68 262.3 144 88.2
RcHm_v2.0_Chr2g0138931 Rosa chinensis HOM05D003870 ORTHO05D004567 2.2e-68 262.3 145 90.3
VMungo0331G0764 Vigna mungo HOM05D003870 ORTHO05D004567 2.2e-68 262.3 145 91.0
Cpa.g.sc1182.1 Carica papaya HOM05D003870 ORTHO05D004567 4.9e-68 261.2 145 88.3
Glyma.08G204800 Glycine max HOM05D003870 ORTHO05D004567 8.3e-68 260.4 145 89.7
FAN05G2130 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.4e-67 259.6 145 88.3
Prupe.3G067400 Prunus persica HOM05D003870 ORTHO05D004567 1.4e-67 259.6 145 89.0
FAN14G2389 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.9e-67 259.2 145 88.3
Phvul.010G148800 Phaseolus vulgaris HOM05D003870 ORTHO05D004567 1.9e-67 259.2 145 89.7
Hma1.2p1_1195F.1_g265780 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 2.4e-67 258.8 146 88.4
Hma1.2p1_3147F.1_g333153 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 2.4e-67 258.8 146 88.4
FAN02G0928 Fragaria x ananassa HOM05D003870 ORTHO05D004567 3.2e-67 258.5 145 88.3
ClCG07G013150 Citrullus lanatus HOM05D003870 ORTHO05D004567 5.4e-67 257.7 145 86.2
MD09G1209500 Malus domestica HOM05D003870 ORTHO05D004567 7.0e-67 257.3 145 87.6
arahy.Tifrunner.gnm1.ann1.71HCYD Arachis hypogaea HOM05D003870 ORTHO05D004567 1.2e-66 256.5 145 88.3
arahy.Tifrunner.gnm1.ann1.YBSA05 Arachis hypogaea HOM05D003870 ORTHO05D004567 1.2e-66 256.5 145 88.3
CSS0035581 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 1.2e-66 256.5 145 86.9
DCAR_023061 Daucus carota HOM05D003870 ORTHO05D004567 1.2e-66 256.5 145 86.9
Aqoxy7G01609 Aquilegia oxysepala HOM05D003870 ORTHO05D004567 1.6e-66 256.1 145 87.6
MELO3C012971.2 Cucumis melo HOM05D003870 ORTHO05D004567 1.6e-66 256.1 145 85.5
FvH4_6g31740 Fragaria vesca HOM05D003870 ORTHO05D004567 1.6e-66 256.1 145 87.6
Nn2g11696 Nelumbo nucifera HOM05D003870 ORTHO05D004567 1.6e-66 256.1 145 87.6
Nn3g18073 Nelumbo nucifera HOM05D003870 ORTHO05D004567 1.6e-66 256.1 146 89.0
FAN09G1730 Fragaria x ananassa HOM05D003870 ORTHO05D004567 2.0e-66 255.8 145 86.9
CSS0004601 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 3.5e-66 255.0 145 86.9
CSS0022866 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 3.5e-66 255.0 145 86.9
CsaV3_3G025000 Cucumis sativus L. HOM05D003870 ORTHO05D004567 3.5e-66 255.0 145 85.5
QL05p021780 Quercus lobata HOM05D003870 ORTHO05D004567 4.6e-66 254.6 144 86.8
Nitab4.5_0000351g0060 Nicotiana tabacum HOM05D003870 ORTHO05D004567 7.8e-66 253.8 146 87.7
TAR383G0495 Trochodendron aralioides HOM05D003870 ORTHO05D004567 7.8e-66 253.8 145 88.3
Nitab4.5_0001315g0130 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.0e-65 253.4 146 86.3
Lsat_1_v5_gn_5_130901 Lactuca sativa HOM05D003870 ORTHO05D004567 1.7e-65 252.7 145 86.9
COL.COLO4_30434 Corchorus olitorius HOM05D003870 ORTHO05D004567 3.0e-65 251.9 145 86.9
Migut.D01017 Erythranthe guttata HOM05D003870 ORTHO05D004567 3.0e-65 251.9 145 83.4
Nitab4.5_0018837g0020 Nicotiana tabacum HOM05D003870 ORTHO05D004567 3.0e-65 251.9 146 87.0
CiPaw.02G148900 Carya illinoinensis HOM05D003870 ORTHO05D004567 3.9e-65 251.5 145 88.3
Nitab4.5_0003418g0030 Nicotiana tabacum HOM05D003870 ORTHO05D004567 3.9e-65 251.5 146 86.3
Sed0024359 Sechium edule HOM05D003870 ORTHO05D004567 3.9e-65 251.5 145 84.1
Glyma.15G016300 Glycine max HOM05D003870 ORTHO05D004567 6.6e-65 250.8 145 86.2
Eucgr.J02958 Eucalyptus grandis HOM05D003870 ORTHO05D004567 1.1e-64 250.0 146 87.0
Nitab4.5_0002859g0140 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.1e-64 250.0 146 86.3
Psat5g298080 Pisum sativum HOM05D003870 ORTHO05D004567 1.1e-64 250.0 147 85.0
Sed0005638 Sechium edule HOM05D003870 ORTHO05D004567 1.1e-64 250.0 145 82.8
BraA08t32272Z Brassica rapa HOM05D003870 ORTHO05D004567 1.9e-64 249.2 146 85.6
CAN.G1152.5 Capsicum annuum HOM05D003870 ORTHO05D004567 1.9e-64 249.2 146 84.9
Thecc.06G092200 Theobroma cacao HOM05D003870 ORTHO05D004567 1.9e-64 249.2 145 85.5
Duzib235G0817 Durio zibethinus HOM05D003870 ORTHO05D004567 2.5e-64 248.8 145 85.5
TAR636G2531 Trochodendron aralioides HOM05D003870 ORTHO05D004567 2.5e-64 248.8 145 85.5
BcaC01g01311 Brassica carinata HOM05D003870 ORTHO05D004567 3.3e-64 248.4 146 84.9
BcaC01g01313 Brassica carinata HOM05D003870 ORTHO05D004567 3.3e-64 248.4 146 84.9
A08p02270 Brassica napus HOM05D003870 ORTHO05D004567 3.3e-64 248.4 146 85.6
Gohir.A05G131700 Gossypium hirsutum HOM05D003870 ORTHO05D004567 3.3e-64 248.4 145 85.5
Lalb_Chr14g0373231 Lupinus albus HOM05D003870 ORTHO05D004567 3.3e-64 248.4 145 86.2
TAR626G1423 Trochodendron aralioides HOM05D003870 ORTHO05D004567 3.3e-64 248.4 145 85.5
Lj3g0012525 Lotus japonicus HOM05D003870 ORTHO05D004567 4.3e-64 248.1 149 84.6
BcaB04g18888 Brassica carinata HOM05D003870 ORTHO05D004567 5.6e-64 247.7 146 84.9
Cc04_g03050 Coffea canephora HOM05D003870 ORTHO05D004567 5.6e-64 247.7 145 84.8
Medtr2g101820 Medicago truncatula HOM05D003870 ORTHO05D004567 5.6e-64 247.7 148 85.8
VMungo1080G1700 Vigna mungo HOM05D003870 ORTHO05D004567 7.3e-64 247.3 138 88.4
Gohir.D05G131200 Gossypium hirsutum HOM05D003870 ORTHO05D004567 9.5e-64 246.9 145 84.1
Gorai.009G134900 Gossypium raimondii HOM05D003870 ORTHO05D004567 9.5e-64 246.9 145 84.1
MBI01_g07179_MAGBIO Magnolia biondii HOM05D003870 ORTHO05D004567 9.5e-64 246.9 145 83.4
PSO832G3918 Papaver somniferum HOM05D003870 ORTHO05D004567 9.5e-64 246.9 146 83.6
Sp1g38770 Schrenkiella parvula HOM05D003870 ORTHO05D004567 9.5e-64 246.9 146 83.6
PSO782G2129 Papaver somniferum HOM05D003870 ORTHO05D004567 1.2e-63 246.5 146 83.6
PGSC0003DMG400002626 Solanum tuberosum HOM05D003870 ORTHO05D004567 1.2e-63 246.5 146 85.6
C03p90500 Brassica napus HOM05D003870 ORTHO05D004567 1.6e-63 246.1 146 84.2
BolC3t21374H Brassica oleracea HOM05D003870 ORTHO05D004567 1.6e-63 246.1 146 84.2
Duzib160G0587 Durio zibethinus HOM05D003870 ORTHO05D004567 1.6e-63 246.1 145 84.8
C06p07460 Brassica napus HOM05D003870 ORTHO05D004567 2.1e-63 245.7 146 83.6
BolC6t35835H Brassica oleracea HOM05D003870 ORTHO05D004567 2.1e-63 245.7 146 83.6
ECA234G4669 Erigeron canadensis HOM05D003870 ORTHO05D004567 2.1e-63 245.7 145 84.1
SGA_v2.0_scaffold5G02558 Striga asiatica HOM05D003870 ORTHO05D004567 2.1e-63 245.7 145 82.1
CAN.G438.27 Capsicum annuum HOM05D003870 ORTHO05D004567 2.8e-63 245.4 146 84.9
Actinidia21679 Actinidia chinensis HOM05D003870 ORTHO05D004567 3.6e-63 245.0 145 83.4
Peaxi162Scf00015g00032 Petunia axillaris HOM05D003870 ORTHO05D004567 4.7e-63 244.6 146 84.2
Sp3g14500 Schrenkiella parvula HOM05D003870 ORTHO05D004567 4.7e-63 244.6 146 83.6
PGSC0003DMG400007571 Solanum tuberosum HOM05D003870 ORTHO05D004567 4.7e-63 244.6 146 86.3
TWI12G1021 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 4.7e-63 244.6 145 83.4
A06p01960 Brassica napus HOM05D003870 ORTHO05D004567 6.2e-63 244.2 146 82.9
BraA06t23412Z Brassica rapa HOM05D003870 ORTHO05D004567 6.2e-63 244.2 146 82.9
PGSC0003DMG400016504 Solanum tuberosum HOM05D003870 ORTHO05D004567 6.2e-63 244.2 146 83.6
GSVIVG01017071001 Vitis vinifera HOM05D003870 ORTHO05D004567 6.2e-63 244.2 145 84.1
AT1G52230 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 8.1e-63 243.8 146 82.9
Solyc03g120640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 8.1e-63 243.8 146 84.9
Aa31LG10G2680 Aethionema arabicum HOM05D003870 ORTHO05D004567 1.1e-62 243.4 146 82.9
Ah.01g021620 Amaranthus hybridus HOM05D003870 ORTHO05D004567 1.1e-62 243.4 145 80.7
Carub.0001s4120 Capsella rubella HOM05D003870 ORTHO05D004567 1.4e-62 243.0 146 82.2
Migut.I00942 Erythranthe guttata HOM05D003870 ORTHO05D004567 1.4e-62 243.0 145 80.7
Solyc06g066640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 1.8e-62 242.7 146 82.9
Solyc12g044280.2 Solanum lycopersicum HOM05D003870 ORTHO05D004567 1.8e-62 242.7 145 84.8
Sopen12g022520 Solanum pennellii HOM05D003870 ORTHO05D004567 1.8e-62 242.7 145 84.8
Rhsim08G0223300 Rhododendron simsii HOM05D003870 ORTHO05D004567 2.3e-62 242.3 146 83.6
Sopen06g024910 Solanum pennellii HOM05D003870 ORTHO05D004567 2.3e-62 242.3 146 82.9
AT3G16140 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 3.1e-62 241.9 146 82.2
Thhalv10021715m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 4.0e-62 241.5 146 82.9
BcaC05g28907 Brassica carinata HOM05D003870 ORTHO05D004567 5.2e-62 241.1 146 82.2
C05p50360 Brassica napus HOM05D003870 ORTHO05D004567 5.2e-62 241.1 146 82.2
BolC5t33784H Brassica oleracea HOM05D003870 ORTHO05D004567 5.2e-62 241.1 146 82.2
HanXRQChr12g0360771 Helianthus annuus HOM05D003870 ORTHO05D004567 5.2e-62 241.1 145 82.8
AL3G28820 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 6.8e-62 240.7 146 82.2
MSTRG.11054 Avicennia marina HOM05D003870 ORTHO05D004567 6.8e-62 240.7 145 80.0
CARHR091300 Cardamine hirsuta HOM05D003870 ORTHO05D004567 6.8e-62 240.7 146 81.5
Thhalv10011814m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 1.2e-61 240.0 146 81.5
CARHR042360 Cardamine hirsuta HOM05D003870 ORTHO05D004567 1.5e-61 239.6 146 81.5
BcaB06g25707 Brassica carinata HOM05D003870 ORTHO05D004567 2.0e-61 239.2 146 81.5
BraA01t03856Z Brassica rapa HOM05D003870 ORTHO05D004567 2.0e-61 239.2 146 82.2
AUR62011659 Chenopodium quinoa HOM05D003870 ORTHO05D004567 2.0e-61 239.2 145 80.7
Oeu029644.1 Olea europaea HOM05D003870 ORTHO05D004567 2.0e-61 239.2 145 80.7
Lalb_Chr25g0279971 Lupinus albus HOM05D003870 ORTHO05D004567 2.6e-61 238.8 146 81.5
Carub.0003s1588 Capsella rubella HOM05D003870 ORTHO05D004567 3.4e-61 238.4 146 81.5
vmacro18888 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 3.4e-61 238.4 146 82.2
A05p33360 Brassica napus HOM05D003870 ORTHO05D004567 4.4e-61 238.0 146 81.5
BraA05t22161Z Brassica rapa HOM05D003870 ORTHO05D004567 4.4e-61 238.0 146 81.5
THA.LOC104817982 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 4.4e-61 238.0 146 83.6
Peaxi162Scf00034g00513 Petunia axillaris HOM05D003870 ORTHO05D004567 5.8e-61 237.7 143 84.6
vmacro16969 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 5.8e-61 237.7 145 81.4
THA.LOC104810527 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 7.5e-61 237.3 147 84.4
TWI75G1362 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 7.5e-61 237.3 146 82.9
BcaB04g17164 Brassica carinata HOM05D003870 ORTHO05D004567 9.9e-61 236.9 144 82.6
Glyma.13G357300 Glycine max HOM05D003870 ORTHO05D004567 9.9e-61 236.9 137 86.9
A01p37960 Brassica napus HOM05D003870 ORTHO05D004567 1.3e-60 236.5 146 81.5
Lsat_1_v5_gn_1_35241 Lactuca sativa HOM05D003870 ORTHO05D004567 2.2e-60 235.7 145 82.8
SGA_v2.0_scaffold69G23361 Striga asiatica HOM05D003870 ORTHO05D004567 2.9e-60 235.3 146 79.5
EL10Ac9g22029 Beta vulgaris HOM05D003870 ORTHO05D004567 4.1e-59 231.5 145 77.2
Rhsim12G0200100 Rhododendron simsii HOM05D003870 ORTHO05D004567 4.1e-59 231.5 145 80.0
CDE02G4568 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 1.6e-58 229.6 146 78.1
unitig_0.g2124 Utricularia gibba HOM05D003870 ORTHO05D004567 3.5e-58 228.4 145 78.6
Oeu024071.1 Olea europaea HOM05D003870 ORTHO05D004567 1.3e-57 226.5 136 80.9
Sc15g0001350 Simmondsia chinensis HOM05D003870 ORTHO05D004567 5.6e-56 221.1 146 80.1
CDE04G3706 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 1.2e-55 219.9 146 75.3
ATR0315G019 Amborella trichopoda HOM05D003870 ORTHO05D004567 2.1e-55 219.2 145 77.9
Nitab4.5_0001968g0090 Nicotiana tabacum HOM05D003870 ORTHO05D004567 2.8e-55 218.8 146 80.8
Hund00643 Selenicereus undatus HOM05D003870 ORTHO05D004567 6.2e-55 217.6 147 76.2
Actinidia32731 Actinidia chinensis HOM05D003870 ORTHO05D004567 4.0e-54 214.9 139 77.7
Os05g0560000 Oryza sativa ssp. japonica HOM05D003870 ORTHO05D004567 6.8e-54 214.2 143 74.8
Zm00001eb295610 Zea mays HOM05D003870 ORTHO05D004567 3.4e-53 211.8 146 76.0
Sopen00g011820 Solanum pennellii HOM05D003870 ORTHO05D004567 4.1e-51 204.9 103 95.1
AUR62016482 Chenopodium quinoa HOM05D003870 ORTHO05D004567 1.7e-49 199.5 145 71.7
TPR.G37200 Trifolium pratense HOM05D003870 ORTHO05D004567 3.9e-49 198.4 147 72.1
AL1G60400 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 4.3e-48 194.9 118 80.5
BcaC08g43379 Brassica carinata HOM05D003870 ORTHO05D004567 2.4e-46 189.1 102 88.2
SEGI_14279 Sequoiadendron giganteum HOM05D003870 ORTHO05D004567 5.8e-45 184.5 147 66.0
HPP92_021482 Vanilla planifolia HOM05D003870 ORTHO05D004567 6.6e-41 171.0 137 70.1
Duzib192G0641 Durio zibethinus HOM05D003870 ORTHO05D004567 4.8e-39 164.9 98 84.7
Pp3c15_19390 Physcomitrium patens HOM05D003870 ORTHO05D004567 3.4e-37 158.7 136 55.1
Pp3c9_19520 Physcomitrium patens HOM05D003870 ORTHO05D004567 5.8e-37 157.9 136 55.9
Dinv30483 Davidia involucrata HOM05D003870 ORTHO05D004567 7.6e-37 157.5 85 89.4
MD17G1191200 Malus domestica HOM05D003870 ORTHO05D004567 4.2e-35 151.8 85 87.1
Mapoly0009s0008 Marchantia polymorpha HOM05D003870 ORTHO05D004567 4.2e-35 151.8 146 57.5
BolC1t04783H Brassica oleracea HOM05D003870 ORTHO05D004567 4.6e-34 148.3 145 60.0
C01p48190 Brassica napus HOM05D003870 ORTHO05D004567 1.8e-33 146.4 145 59.3
CBR_g31512 Chara braunii HOM05D003870 ORTHO05D004567 2.3e-33 146.0 145 55.9
Peaxi162Scf00207g00951 Petunia axillaris HOM05D003870 ORTHO05D004567 7.4e-32 141.0 146 61.0
HanXRQChr10g0313451 Helianthus annuus HOM05D003870 ORTHO05D004567 6.9e-30 134.4 85 76.5
ECA247G2331 Erigeron canadensis HOM05D003870 ORTHO05D004567 3.2e-27 125.6 72 79.2
MD17G1191400 Malus domestica HOM05D003870 ORTHO05D004567 2.8e-23 112.5 60 91.7
MD10G1187500 Malus domestica HOM05D003870 ORTHO05D004567 2.9e-20 102.4 74 70.3
MD14G1193300 Malus domestica HOM05D003870 ORTHO05D004567 6.0e-18 94.7 74 68.9
MCO07G351 Micromonas commoda HOM05D003870 ORTHO05D004567 6.7e-17 91.3 126 42.9
unitig_747.g21485 Utricularia gibba HOM05D003870 ORTHO05D004567 1.7e-12 76.6 142 37.3
Zm00001eb343540 Zea mays HOM05D003870 ORTHO05D004567 1.7e-12 76.6 131 45.8
Cre07.g330250 Chlamydomonas reinhardtii HOM05D003870 ORTHO05D004567 4.2e-11 72.0 99 39.4
MD02G1178900 Malus domestica HOM05D003870 ORTHO05D004567 2.7e-10 69.3 33 93.9


User provided reference genes

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