Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 7.8e-109 397.1 198 100.0
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 1.8e-89 332.8 196 84.7
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 1.2e-88 330.1 196 82.1
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.2e-88 330.1 190 83.7
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 1.2e-88 330.1 172 95.3
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 3.8e-87 325.1 190 83.2
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 3.2e-86 322.0 196 82.1
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 3.2e-86 322.0 191 81.2
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 4.2e-86 321.6 190 83.2
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 1.6e-85 319.7 189 83.1
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 2.1e-85 319.3 195 81.5
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 4.6e-85 318.2 196 79.6
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 1.0e-84 317.0 198 78.8
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 1.7e-84 316.2 196 80.1
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 3.0e-84 315.5 196 79.6
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 8.7e-84 313.9 190 80.5
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 1.5e-83 313.2 196 79.1
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 1.5e-83 313.2 196 76.5
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.9e-83 312.8 191 82.2
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 3.3e-83 312.0 196 77.6
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 7.3e-83 310.8 191 80.6
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 7.3e-83 310.8 193 79.3
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 1.3e-82 310.1 196 77.6
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 1.3e-82 310.1 190 80.0
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 1.3e-82 310.1 191 81.2
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 4.8e-82 308.1 196 77.6
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 8.1e-82 307.4 198 76.8
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 1.1e-81 307.0 196 77.0
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 1.1e-81 307.0 190 75.3
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 2.4e-81 305.8 190 79.5
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 2.4e-81 305.8 195 77.4
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 5.3e-81 304.7 198 76.8
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 1.2e-80 303.5 195 75.4
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 2.6e-80 302.4 190 77.4
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 5.8e-80 301.2 189 79.4
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 7.6e-80 300.8 193 78.2
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 7.6e-80 300.8 191 76.4
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 1.3e-79 300.1 192 75.5
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.3e-79 300.1 196 76.5
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 1.7e-79 299.7 198 72.7
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 2.2e-79 299.3 191 75.4
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 3.8e-79 298.5 191 76.4
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 6.4e-79 297.7 193 76.7
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 1.1e-78 297.0 188 78.7
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 1.4e-78 296.6 188 78.2
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 1.9e-78 296.2 197 75.1
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 2.4e-78 295.8 196 76.5
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 3.2e-78 295.4 191 75.4
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 4.2e-78 295.0 196 75.0
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 4.2e-78 295.0 171 83.6
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 7.1e-78 294.3 189 76.7
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 9.3e-78 293.9 190 75.8
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.2e-77 293.5 190 75.8
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 2.1e-77 292.7 190 76.3
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 4.6e-77 291.6 196 74.0
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 6.0e-77 291.2 191 73.8
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 7.9e-77 290.8 194 74.2
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 7.9e-77 290.8 196 74.0
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 1.0e-76 290.4 191 74.9
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 1.7e-76 289.7 176 82.4
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 1.7e-76 289.7 187 75.4
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 2.3e-76 289.3 188 76.1
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 2.3e-76 289.3 179 79.9
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 3.0e-76 288.9 191 72.8
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 5.1e-76 288.1 168 82.1
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 1.1e-75 287.0 191 73.3
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 1.9e-75 286.2 189 77.8
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 7.3e-75 284.3 190 71.6
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 7.3e-75 284.3 190 72.6
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 7.3e-75 284.3 170 83.5
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 7.3e-75 284.3 189 75.1
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 1.3e-74 283.5 170 80.6
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 1.6e-74 283.1 192 73.4
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 8.1e-74 280.8 189 70.4
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 8.1e-74 280.8 193 72.0
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 1.1e-73 280.4 170 78.8
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 1.8e-73 279.6 196 71.4
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 3.1e-73 278.9 169 81.1
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 4.0e-73 278.5 172 79.1
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 5.3e-73 278.1 198 70.7
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 1.2e-72 276.9 200 71.0
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 4.5e-72 275.0 203 69.0
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 7.6e-72 274.2 169 80.5
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 9.9e-72 273.9 196 70.9
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 2.9e-71 272.3 178 75.3
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 8.4e-71 270.8 194 71.6
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 1.4e-70 270.0 187 72.2
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 1.2e-69 266.9 168 77.4
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 2.1e-69 266.2 190 69.5
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 2.7e-69 265.8 187 69.5
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 3.5e-69 265.4 186 71.0
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 4.6e-69 265.0 191 73.3
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 4.6e-69 265.0 173 76.9
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.0e-68 263.8 174 75.9
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 1.0e-68 263.8 189 70.9
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.8e-68 263.1 189 70.4
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 1.8e-68 263.1 188 67.6
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 5.1e-68 261.5 177 71.8
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 1.9e-67 259.6 176 73.3
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 8.1e-66 254.2 190 68.9
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 1.1e-65 253.8 167 73.7
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 1.1e-65 253.8 196 65.8
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 2.4e-65 252.7 190 62.6
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 4.5e-64 248.4 163 71.8
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 3.8e-63 245.4 190 61.1
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 8.4e-63 244.2 190 60.0
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.1e-62 243.8 171 70.2
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 2.5e-62 242.7 190 62.6
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 1.6e-61 240.0 142 82.4
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 2.1e-61 239.6 188 60.6
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 4.6e-61 238.4 177 68.9
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 7.9e-61 237.7 170 69.4
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 1.3e-60 236.9 170 70.6
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 1.5e-59 233.4 142 81.7
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 4.3e-59 231.9 190 60.5
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 4.3e-59 231.9 188 63.8
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 5.7e-59 231.5 190 63.2
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 7.4e-59 231.1 189 64.0
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 3.7e-58 228.8 190 58.9
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 3.4e-56 222.2 190 60.5
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 3.8e-55 218.8 189 58.2
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 3.8e-55 218.8 133 78.2
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 6.5e-55 218.0 170 64.1
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 9.7e-51 204.1 189 56.6
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 1.3e-50 203.8 118 84.7
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.6e-50 203.4 191 59.7
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 1.8e-49 199.9 121 83.5
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 5.0e-47 191.8 120 78.3
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 5.5e-46 188.3 190 54.2
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 1.6e-45 186.8 170 61.2
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 8.8e-44 181.0 187 48.7
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 9.7e-43 177.6 133 63.2
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 6.7e-36 154.8 170 51.8
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 7.7e-24 114.8 116 55.2
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 1.3e-18 97.4 52 88.5
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 4.5e-16 89.0 60 73.3
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 3.2e-14 82.8 58 63.8
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 3.4e-11 72.8 168 30.4
Sopen12g022580 Solanum pennellii HOM05D005658 ORTHO05D006989 4.4e-11 72.4 168 35.7
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 1.3e-10 70.9 168 30.4
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 2.2e-10 70.1 171 31.0
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 2.2e-10 70.1 168 31.0
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 2.2e-10 70.1 172 29.1
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 3.7e-10 69.3 178 31.5
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 3.7e-10 69.3 173 30.1
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 3.7e-10 69.3 169 30.8
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 8.3e-10 68.2 173 31.8
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 4.1e-09 65.9 195 29.7
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 9.2e-09 64.7 172 29.7
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 2.7e-08 63.2 174 31.0
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 7.7e-08 61.6 169 28.4
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 1.0e-07 61.2 171 28.7
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 1.0e-07 61.2 56 57.1
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 1.3e-07 60.8 183 27.3
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 2.3e-07 60.1 102 41.2
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 5.0e-07 58.9 170 29.4
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 6.6e-07 58.5 173 29.5
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 1.1e-06 57.8 152 28.9
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 1.1e-06 57.8 171 28.1
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 1.5e-06 57.4 173 28.3
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 1.9e-06 57.0 179 27.4
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 2.5e-06 56.6 174 26.4
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 3.3e-06 56.2 181 28.7
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 4.3e-06 55.8 181 28.2
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 5.6e-06 55.5 180 27.8
arahy.Tifrunner.gnm1.ann1.K04B1Q Arachis hypogaea HOM05D006661 ORTHO05D008369 9.5e-06 54.7 68 47.1
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 9.5e-06 54.7 172 29.1


User provided reference genes

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