Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 1.4e-62 242.7 117 100.0
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 1.3e-23 113.2 105 61.0
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 1.1e-22 110.2 105 60.0
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 9.5e-22 107.1 70 74.3
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 3.6e-21 105.1 100 58.0
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 1.5e-19 99.8 106 53.8
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 2.0e-19 99.4 102 53.9
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 2.0e-19 99.4 105 51.4
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 4.4e-19 98.2 105 52.4
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 5.8e-19 97.8 105 50.5
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 7.5e-19 97.4 103 50.5
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 9.8e-19 97.1 103 51.5
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 1.3e-18 96.7 105 50.5
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 1.7e-18 96.3 101 53.5
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 1.7e-18 96.3 100 53.0
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 2.2e-18 95.9 105 50.5
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 4.9e-18 94.7 101 52.5
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 6.4e-18 94.4 98 53.1
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 6.4e-18 94.4 106 49.1
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 1.1e-17 93.6 100 52.0
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 1.9e-17 92.8 101 52.5
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 1.9e-17 92.8 108 47.2
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 2.4e-17 92.4 99 51.5
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 3.2e-17 92.0 100 54.0
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 4.1e-17 91.7 106 49.1
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 4.1e-17 91.7 106 49.1
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 5.4e-17 91.3 108 46.3
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 9.2e-17 90.5 96 51.0
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 9.2e-17 90.5 103 46.6
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 9.2e-17 90.5 100 51.0
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 1.2e-16 90.1 102 46.1
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 1.2e-16 90.1 103 48.5
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 1.2e-16 90.1 102 48.0
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 1.2e-16 90.1 108 45.4
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 1.6e-16 89.7 106 46.2
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 1.6e-16 89.7 106 48.1
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 1.6e-16 89.7 106 42.5
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 1.6e-16 89.7 100 49.0
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 2.1e-16 89.4 105 48.6
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 2.7e-16 89.0 98 48.0
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 3.5e-16 88.6 100 49.0
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 4.6e-16 88.2 106 45.3
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 4.6e-16 88.2 103 46.6
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 4.6e-16 88.2 106 45.3
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 4.6e-16 88.2 100 50.0
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 7.8e-16 87.4 106 44.3
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 7.8e-16 87.4 102 47.1
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 7.8e-16 87.4 102 43.1
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 7.8e-16 87.4 100 49.0
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 1.0e-15 87.0 106 45.3
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 1.0e-15 87.0 106 46.2
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 1.0e-15 87.0 104 47.1
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 1.3e-15 86.7 112 47.3
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 1.3e-15 86.7 105 47.6
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.7e-15 86.3 100 48.0
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 2.3e-15 85.9 106 45.3
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 2.3e-15 85.9 98 49.0
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 2.3e-15 85.9 103 46.6
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 2.3e-15 85.9 106 43.4
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 3.0e-15 85.5 103 45.6
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 3.0e-15 85.5 106 43.4
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 3.0e-15 85.5 101 45.5
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 3.9e-15 85.1 98 48.0
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 5.1e-15 84.7 106 46.2
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 5.1e-15 84.7 106 43.4
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 5.1e-15 84.7 103 45.6
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 5.1e-15 84.7 103 45.6
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 5.1e-15 84.7 103 45.6
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 5.1e-15 84.7 100 47.0
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 5.1e-15 84.7 102 46.1
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 5.1e-15 84.7 103 44.7
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 5.1e-15 84.7 100 47.0
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 8.6e-15 84.0 106 41.5
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 8.6e-15 84.0 102 44.1
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 1.5e-14 83.2 100 47.0
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 1.9e-14 82.8 101 42.6
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 1.9e-14 82.8 99 44.4
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 2.5e-14 82.4 106 41.5
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 3.3e-14 82.0 101 46.5
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 4.3e-14 81.6 130 39.2
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 5.6e-14 81.3 100 45.0
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 9.5e-14 80.5 102 43.1
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 1.2e-13 80.1 100 45.0
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 1.2e-13 80.1 100 45.0
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 1.2e-13 80.1 98 48.0
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 1.2e-13 80.1 117 41.0
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.2e-13 80.1 117 41.0
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 1.2e-13 80.1 89 47.2
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 1.6e-13 79.7 113 44.2
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 1.6e-13 79.7 97 42.3
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 1.6e-13 79.7 116 44.0
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 2.8e-13 79.0 96 46.9
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 6.2e-13 77.8 99 46.5
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 6.2e-13 77.8 103 44.7
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 1.4e-12 76.6 100 43.0
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 1.4e-12 76.6 100 43.0
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 2.3e-12 75.9 108 43.5
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 2.3e-12 75.9 118 39.0
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 1.2e-11 73.6 96 43.8
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 4.4e-11 71.6 94 41.5
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 4.4e-11 71.6 86 47.7
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 5.8e-11 71.2 94 42.6
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 1.3e-10 70.1 99 41.4
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.3e-10 70.1 96 39.6
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 3.7e-10 68.6 126 33.3
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 3.7e-10 68.6 147 32.7
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 1.4e-09 66.6 88 45.5
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 3.2e-09 65.5 107 37.4
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 4.1e-09 65.1 41 68.3
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 4.1e-09 65.1 97 38.1
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 4.1e-09 65.1 97 38.1
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 9.2e-09 63.9 99 36.4
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 1.6e-08 63.2 39 69.2
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 3.5e-08 62.0 61 52.5
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 4.6e-08 61.6 39 69.2
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 4.6e-08 61.6 86 40.7
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 1.3e-07 60.1 39 66.7
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 3.0e-07 58.9 51 56.9
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 6.6e-07 57.8 86 39.5
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 8.6e-07 57.4 33 81.8
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 1.5e-06 56.6 86 37.2


User provided reference genes

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