Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 3.4e-69 265.4 191 100.0
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 1.1e-46 190.7 192 80.7
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 1.3e-44 183.7 187 75.4
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 1.3e-44 183.7 193 78.2
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 2.9e-44 182.6 190 70.5
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 5.0e-44 181.8 191 77.0
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 5.5e-43 178.3 193 72.0
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 2.1e-42 176.4 193 78.8
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 2.7e-42 176.0 187 70.1
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 3.6e-42 175.6 184 77.7
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.3e-41 172.9 184 76.6
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 3.0e-41 172.6 184 77.2
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 1.1e-40 170.6 191 71.7
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 1.6e-39 166.8 192 69.3
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 1.8e-38 163.3 199 65.8
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 3.1e-38 162.5 196 73.5
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 9.1e-38 161.0 189 74.6
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 1.2e-37 160.6 197 69.5
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 2.6e-37 159.5 95 85.3
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 4.5e-37 158.7 96 84.4
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 5.9e-37 158.3 96 84.4
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.0e-36 157.5 185 58.4
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 2.9e-36 156.0 182 74.7
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 3.8e-36 155.6 98 80.6
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 8.5e-36 154.5 191 59.2
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.9e-35 153.3 216 67.6
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 1.9e-35 153.3 197 68.0
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 5.5e-35 151.8 97 79.4
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 5.5e-35 151.8 191 59.2
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 9.4e-35 151.0 192 65.1
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.2e-34 150.6 98 77.6
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.6e-34 150.2 201 47.8
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 1.6e-34 150.2 96 80.2
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 2.1e-34 149.8 189 71.4
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 2.7e-34 149.4 197 64.5
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 2.7e-34 149.4 185 63.8
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 2.7e-34 149.4 197 64.0
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.4e-33 147.1 224 64.7
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 1.4e-33 147.1 191 66.0
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 3.0e-33 146.0 98 76.5
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 3.0e-33 146.0 98 75.5
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 3.9e-33 145.6 190 69.5
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 8.8e-33 144.4 98 74.5
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 1.1e-32 144.1 98 74.5
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 2.6e-32 142.9 183 55.2
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 2.6e-32 142.9 87 82.8
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 2.6e-32 142.9 192 62.5
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 2.6e-32 142.9 96 77.1
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 4.4e-32 142.1 95 77.9
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 5.7e-32 141.7 96 76.0
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 5.7e-32 141.7 200 66.0
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 7.4e-32 141.4 98 73.5
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 9.7e-32 141.0 96 72.9
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 9.7e-32 141.0 98 74.5
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 1.3e-31 140.6 193 62.2
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 1.7e-31 140.2 98 71.4
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 1.7e-31 140.2 93 75.3
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 1.7e-31 140.2 98 72.4
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 2.2e-31 139.8 96 72.9
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 2.2e-31 139.8 96 69.8
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 6.3e-31 138.3 97 74.2
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 6.3e-31 138.3 93 74.2
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 1.8e-30 136.7 197 60.9
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 2.4e-30 136.3 98 73.5
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 6.9e-30 134.8 98 72.4
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 9.1e-30 134.4 87 79.3
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 9.1e-30 134.4 85 81.2
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.2e-29 134.0 167 58.1
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 1.2e-29 134.0 94 72.3
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 2.0e-29 133.3 164 64.0
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 2.6e-29 132.9 98 71.4
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 5.9e-29 131.7 90 71.1
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 5.9e-29 131.7 98 70.4
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.7e-28 130.2 87 77.0
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 2.2e-28 129.8 177 68.9
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 3.8e-28 129.0 183 61.2
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 1.1e-27 127.5 85 75.3
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 3.2e-27 125.9 91 65.9
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 7.2e-27 124.8 78 80.8
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 2.1e-26 123.2 96 63.5
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 4.7e-26 122.1 95 64.2
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 6.1e-26 121.7 99 71.7
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 1.4e-25 120.6 125 55.2
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 1.8e-25 120.2 87 70.1
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 3.9e-25 119.0 77 79.2
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 6.7e-25 118.2 209 63.2
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 1.1e-24 117.5 96 65.6
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 1.5e-24 117.1 97 70.1
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 7.4e-24 114.8 96 61.5
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 7.4e-24 114.8 96 61.5
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 7.4e-24 114.8 96 61.5
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 1.7e-23 113.6 79 75.9
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 1.7e-23 113.6 79 75.9
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 1.1e-22 110.9 92 59.8
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 1.1e-22 110.9 92 59.8
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 1.8e-22 110.2 99 60.6
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.2e-21 107.5 158 51.9
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 4.5e-21 105.5 87 62.1
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 8.5e-20 101.3 88 67.0
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 8.5e-20 101.3 88 67.0
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 2.5e-19 99.8 80 73.8
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 2.5e-19 99.8 96 54.2
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 7.2e-19 98.2 79 70.9
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 1.2e-18 97.4 81 66.7
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 1.4e-17 94.0 80 71.2
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 1.4e-17 94.0 191 59.2
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 3.0e-17 92.8 95 53.7
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 8.8e-17 91.3 164 59.8
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 2.4e-14 83.2 95 51.6
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 7.0e-14 81.6 99 48.5
SMO358G0601 Selaginella moellendorffii HOM05D006504 ORTHO05D007867 9.1e-14 81.3 89 51.7
Nitab4.5_0001219g0120 Nicotiana tabacum HOM05D006504 ORTHO05D007867 1.6e-13 80.5 88 55.7
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 2.0e-13 80.1 51 74.5
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 3.5e-13 79.3 79 55.7
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 1.3e-12 77.4 48 77.1
DCAR_007625 Daucus carota HOM05D006504 ORTHO05D007867 5.0e-12 75.5 86 50.0
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 7.2e-11 71.6 73 57.5
Pp3c21_4920 Physcomitrium patens HOM05D006504 ORTHO05D007867 1.5e-08 63.9 96 38.5
AagrBONN_evm.TU.Sc2ySwM_344.1668 Anthoceros agrestis HOM05D006504 ORTHO05D007867 4.4e-08 62.4 59 50.8
AT1G29580 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 5.7e-08 62.0 98 44.9
Phvul.010G138400 Phaseolus vulgaris HOM05D006504 ORTHO05D007867 1.7e-07 60.5 39 79.5
Nitab4.5_0002964g0020 Nicotiana tabacum HOM05D006504 ORTHO05D007867 8.3e-07 58.2 123 71.5
Aa31LG8G1010 Aethionema arabicum HOM05D006504 ORTHO05D007867 1.8e-06 57.0 58 50.0
SGA_v2.0_scaffold464G52010 Striga asiatica HOM05D006504 ORTHO05D007867 3.1e-06 56.2 44 63.6


User provided reference genes

Program Settings