Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 9.0e-222 773.5 447 100.0
Potri.001G193400 Populus trichocarpa HOM05D006098 ORTHO05D007470 2.4e-206 722.2 393 93.1
Sabra01G0135500 Salix brachista HOM05D006098 ORTHO05D007470 3.8e-204 714.9 396 91.9
Sabra03G0019100 Salix brachista HOM05D006098 ORTHO05D007470 2.5e-195 685.6 482 76.8
Thecc.03G318000 Theobroma cacao HOM05D006098 ORTHO05D007470 2.7e-178 629.0 387 82.4
COL.COLO4_10360 Corchorus olitorius HOM05D006098 ORTHO05D007470 6.1e-178 627.9 387 82.2
Dinv41811 Davidia involucrata HOM05D006098 ORTHO05D007470 6.8e-177 624.4 374 82.6
Gorai.008G220000 Gossypium raimondii HOM05D006098 ORTHO05D007470 8.8e-177 624.0 387 81.4
Duzib205G1615 Durio zibethinus HOM05D006098 ORTHO05D007470 4.4e-176 621.7 383 82.0
Manes.15G184300 Manihot esculenta HOM05D006098 ORTHO05D007470 1.7e-175 619.8 391 80.8
Atru.chr8.2640 Acer truncatum HOM05D006098 ORTHO05D007470 1.2e-173 613.6 387 80.1
Gorai.004G178500 Gossypium raimondii HOM05D006098 ORTHO05D007470 4.5e-173 611.7 380 80.5
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 2.9e-172 609.0 391 78.0
Gohir.A08G150000 Gossypium hirsutum HOM05D006098 ORTHO05D007470 1.5e-171 606.7 381 80.1
TAR629G3250 Trochodendron aralioides HOM05D006098 ORTHO05D007470 4.4e-168 595.1 380 78.2
GSVIVG01036872001 Vitis vinifera HOM05D006098 ORTHO05D007470 2.4e-166 589.3 392 77.3
Peaxi162Scf00045g00071 Petunia axillaris HOM05D006098 ORTHO05D007470 7.0e-166 587.8 391 75.2
CSS0030969 Camellia sinensis var. sinensis HOM05D006098 ORTHO05D007470 1.2e-165 587.0 374 77.3
Nn1g09368 Nelumbo nucifera HOM05D006098 ORTHO05D007470 3.5e-165 585.5 393 75.6
Duzib068G0239 Durio zibethinus HOM05D006098 ORTHO05D007470 5.9e-165 584.7 385 77.4
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 7.3e-163 577.8 392 74.2
ECA246G0847 Erigeron canadensis HOM05D006098 ORTHO05D007470 1.2e-162 577.0 376 77.4
Nitab4.5_0011712g0010 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.2e-162 577.0 391 74.2
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 3.6e-162 575.5 393 75.8
Actinidia14735 Actinidia chinensis HOM05D006098 ORTHO05D007470 8.0e-162 574.3 374 77.3
Cc08_g05440 Coffea canephora HOM05D006098 ORTHO05D007470 2.3e-161 572.8 391 72.6
DCAR_028369 Daucus carota HOM05D006098 ORTHO05D007470 3.1e-161 572.4 372 76.3
FvH4_2g37220 Fragaria vesca HOM05D006098 ORTHO05D007470 4.0e-161 572.0 386 74.9
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 4.0e-161 572.0 393 73.8
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 4.0e-161 572.0 392 73.7
Rhsim11G0034900 Rhododendron simsii HOM05D006098 ORTHO05D007470 5.2e-161 571.6 383 76.0
PGSC0003DMG400018483 Solanum tuberosum HOM05D006098 ORTHO05D007470 5.2e-161 571.6 378 75.7
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 1.2e-160 570.5 376 75.8
Nn7g37397 Nelumbo nucifera HOM05D006098 ORTHO05D007470 1.5e-160 570.1 397 73.6
RcHm_v2.0_Chr6g0304491 Rosa chinensis HOM05D006098 ORTHO05D007470 1.5e-160 570.1 391 74.4
Solyc08g075520.4 Solanum lycopersicum HOM05D006098 ORTHO05D007470 4.4e-160 568.5 391 73.4
FAN20G1855 Fragaria x ananassa HOM05D006098 ORTHO05D007470 5.8e-160 568.2 386 74.6
FAN27G2650 Fragaria x ananassa HOM05D006098 ORTHO05D007470 5.8e-160 568.2 382 75.1
Peaxi162Scf00053g00062 Petunia axillaris HOM05D006098 ORTHO05D007470 1.7e-159 566.6 391 72.6
Actinidia18166 Actinidia chinensis HOM05D006098 ORTHO05D007470 8.3e-159 564.3 391 73.1
Actinidia01257 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.4e-158 563.5 365 76.2
Sopen08g001580 Solanum pennellii HOM05D006098 ORTHO05D007470 1.4e-158 563.5 378 74.9
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 1.9e-158 563.1 374 76.2
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 3.2e-158 562.4 390 72.3
EL10Ac5g12579 Beta vulgaris HOM05D006098 ORTHO05D007470 4.1e-158 562.0 390 72.8
THA.LOC104811082 Tarenaya hassleriana HOM05D006098 ORTHO05D007470 5.4e-158 561.6 392 74.7
SalBow4G1396 Salvia bowleyana HOM05D006098 ORTHO05D007470 9.2e-158 560.8 393 70.7
CAN.G884.9 Capsicum annuum HOM05D006098 ORTHO05D007470 1.2e-157 560.5 378 74.6
CAN.G884.14 Capsicum annuum HOM05D006098 ORTHO05D007470 7.8e-157 557.8 378 74.1
FAN15G0890 Fragaria x ananassa HOM05D006098 ORTHO05D007470 1.3e-156 557.0 385 74.3
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 6.6e-156 554.7 376 75.8
Solyc08g005560.3 Solanum lycopersicum HOM05D006098 ORTHO05D007470 6.6e-156 554.7 378 73.8
Nitab4.5_0001175g0140 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.5e-155 553.5 395 72.2
Lj8A337G13 Lonicera japonica HOM05D006098 ORTHO05D007470 4.3e-155 552.0 360 76.9
Gohir.D12G205100 Gossypium hirsutum HOM05D006098 ORTHO05D007470 5.6e-155 551.6 333 82.3
Nitab4.5_0000985g0060 Nicotiana tabacum HOM05D006098 ORTHO05D007470 7.3e-155 551.2 376 74.2
CAN.G1026.8 Capsicum annuum HOM05D006098 ORTHO05D007470 9.5e-155 550.8 391 71.4
MBI15_g33454_MAGBIO Magnolia biondii HOM05D006098 ORTHO05D007470 1.2e-154 550.4 393 71.8
MSTRG.1762 Avicennia marina HOM05D006098 ORTHO05D007470 3.6e-154 548.9 392 70.7
Ah.12g058500 Amaranthus hybridus HOM05D006098 ORTHO05D007470 1.1e-153 547.4 390 72.1
Gohir.A12G202400 Gossypium hirsutum HOM05D006098 ORTHO05D007470 1.8e-153 546.6 333 81.7
Rhsim11G0035500 Rhododendron simsii HOM05D006098 ORTHO05D007470 1.8e-153 546.6 425 68.2
Nitab4.5_0000898g0120 Nicotiana tabacum HOM05D006098 ORTHO05D007470 3.1e-153 545.8 381 72.4
AUR62030416 Chenopodium quinoa HOM05D006098 ORTHO05D007470 6.8e-153 544.7 422 66.8
Oeu046790.1 Olea europaea HOM05D006098 ORTHO05D007470 1.5e-152 543.5 378 72.0
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 3.4e-152 542.3 376 74.5
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 2.9e-151 539.3 391 70.3
ECA240G1264 Erigeron canadensis HOM05D006098 ORTHO05D007470 6.4e-151 538.1 376 72.9
Nitab4.5_0000030g0370 Nicotiana tabacum HOM05D006098 ORTHO05D007470 9.2e-150 534.3 360 75.3
Lsat_1_v5_gn_5_57121 Lactuca sativa HOM05D006098 ORTHO05D007470 3.3e-147 525.8 391 71.9
Dinv37422 Davidia involucrata HOM05D006098 ORTHO05D007470 4.3e-147 525.4 340 78.2
HanXRQChr03g0081041 Helianthus annuus HOM05D006098 ORTHO05D007470 5.6e-147 525.0 375 72.5
Actinidia32783 Actinidia chinensis HOM05D006098 ORTHO05D007470 2.3e-145 519.6 379 71.2
SGA_v2.0_scaffold111G31352 Striga asiatica HOM05D006098 ORTHO05D007470 1.2e-144 517.3 384 68.2
ATR0568G039 Amborella trichopoda HOM05D006098 ORTHO05D007470 2.9e-143 512.7 374 70.9
PSO541G2197 Papaver somniferum HOM05D006098 ORTHO05D007470 7.8e-141 504.6 395 66.3
PSO675G7908 Papaver somniferum HOM05D006098 ORTHO05D007470 1.3e-140 503.8 395 66.1
SalBow8G2199 Salvia bowleyana HOM05D006098 ORTHO05D007470 2.4e-137 493.0 394 65.7
AT4G19160 Arabidopsis thaliana HOM05D006098 ORTHO05D007470 1.5e-136 490.3 392 66.1
AL7G34930 Arabidopsis lyrata HOM05D006098 ORTHO05D007470 5.8e-136 488.4 392 65.6
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 9.9e-136 487.6 386 66.1
Carub.0007s2199 Capsella rubella HOM05D006098 ORTHO05D007470 2.9e-135 486.1 384 65.1
CDE01G0744 Ceratophyllum demersum HOM05D006098 ORTHO05D007470 1.7e-132 476.9 380 63.9
Manes.17G016300 Manihot esculenta HOM05D006098 ORTHO05D007470 1.6e-130 470.3 319 77.4
Sp7g17860 Schrenkiella parvula HOM05D006098 ORTHO05D007470 3.8e-127 459.1 410 61.5
unitig_37.g12121 Utricularia gibba HOM05D006098 ORTHO05D007470 2.1e-125 453.4 374 64.7
CARHR226030 Cardamine hirsuta HOM05D006098 ORTHO05D007470 2.7e-125 453.0 428 59.3
SEGI_14227 Sequoiadendron giganteum HOM05D006098 ORTHO05D007470 1.0e-124 451.1 365 62.5
Peaxi162Scf00876g00435 Petunia axillaris HOM05D006098 ORTHO05D007470 1.7e-124 450.3 380 62.6
Thhalv10025127m.g Eutrema salsugineum HOM05D006098 ORTHO05D007470 1.5e-123 447.2 411 60.6
BcaC09g51434 Brassica carinata HOM05D006098 ORTHO05D007470 2.1e-122 443.4 402 61.7
BcaNung04007 Brassica carinata HOM05D006098 ORTHO05D007470 2.8e-122 443.0 397 62.0
C01p13160 Brassica napus HOM05D006098 ORTHO05D007470 1.8e-121 440.3 403 61.5
BolC1t01289H Brassica oleracea HOM05D006098 ORTHO05D007470 1.8e-121 440.3 403 61.5
BraA01t01058Z Brassica rapa HOM05D006098 ORTHO05D007470 9.0e-121 438.0 401 60.6
A01p11120 Brassica napus HOM05D006098 ORTHO05D007470 1.5e-120 437.2 414 58.9
Sopen08g024170 Solanum pennellii HOM05D006098 ORTHO05D007470 1.4e-118 430.6 313 69.6
PGSC0003DMG400016110 Solanum tuberosum HOM05D006098 ORTHO05D007470 6.7e-116 421.8 313 68.7
BcaC01g00601 Brassica carinata HOM05D006098 ORTHO05D007470 2.8e-106 389.8 389 55.0
A08p14200 Brassica napus HOM05D006098 ORTHO05D007470 3.7e-106 389.4 379 56.2
BraA08t33414Z Brassica rapa HOM05D006098 ORTHO05D007470 3.7e-106 389.4 379 56.2
C03p81800 Brassica napus HOM05D006098 ORTHO05D007470 9.0e-105 384.8 384 55.7
BolC3t20457H Brassica oleracea HOM05D006098 ORTHO05D007470 9.0e-105 384.8 384 55.7
BcaB04g18531 Brassica carinata HOM05D006098 ORTHO05D007470 2.0e-104 383.6 396 53.8
Gohir.D08G171101 Gossypium hirsutum HOM05D006098 ORTHO05D007470 4.5e-104 382.5 234 82.1
CAN.G947.35 Capsicum annuum HOM05D006098 ORTHO05D007470 1.9e-94 350.5 365 55.6
FAN27G0800 Fragaria x ananassa HOM05D006098 ORTHO05D007470 7.7e-88 328.6 239 72.8
MSTRG.13909 Avicennia marina HOM05D006098 ORTHO05D007470 9.7e-83 311.6 215 68.8
AagrBONN_evm.TU.Sc2ySwM_368.631 Anthoceros agrestis HOM05D006098 ORTHO05D007470 1.3e-66 258.1 364 41.5
HanXRQChr05g0158621 Helianthus annuus HOM05D006098 ORTHO05D007470 6.5e-63 245.7 160 81.2
FvH4_2g37180 Fragaria vesca HOM05D006098 ORTHO05D007470 4.8e-58 229.6 139 82.7
SMO364G0549 Selaginella moellendorffii HOM05D006098 ORTHO05D007470 1.2e-53 214.9 382 37.2
Pp3c12_14620 Physcomitrium patens HOM05D006098 ORTHO05D007470 1.2e-51 208.4 399 34.8
Hund11040 Selenicereus undatus HOM05D006098 ORTHO05D007470 7.8e-48 195.7 390 36.7
Oeu015533.1 Olea europaea HOM05D006098 ORTHO05D007470 1.6e-45 188.0 152 61.8
HanXRQChr11g0344761 Helianthus annuus HOM05D006098 ORTHO05D007470 5.2e-44 183.0 160 63.8
HanXRQChr09g0271561 Helianthus annuus HOM05D006098 ORTHO05D007470 9.8e-43 178.7 129 72.9
Eucgr.D02551 Eucalyptus grandis HOM05D006098 ORTHO05D007470 2.4e-41 174.1 117 75.2
Rhsim11G0035700 Rhododendron simsii HOM05D006098 ORTHO05D007470 5.4e-41 172.9 381 36.2
Oeu042198.1 Olea europaea HOM05D006098 ORTHO05D007470 1.6e-37 161.4 235 44.3
Eucgr.D02550 Eucalyptus grandis HOM05D006098 ORTHO05D007470 8.1e-37 159.1 122 63.9
Peaxi162Scf00527g00718 Petunia axillaris HOM05D006098 ORTHO05D007470 3.1e-28 130.6 196 40.8
Pp3c4_2130 Physcomitrium patens HOM05D006098 ORTHO05D007470 4.4e-27 126.7 319 31.3
RcHm_v2.0_Chr4g0402301 Rosa chinensis HOM05D006098 ORTHO05D007470 2.2e-26 124.4 126 55.6
HanXRQChr11g0344831 Helianthus annuus HOM05D006098 ORTHO05D007470 1.0e-23 115.5 78 73.1
Prupe.1G352900 Prunus persica HOM05D006098 ORTHO05D007470 1.2e-21 108.6 79 70.9
Sc11g0006450 Simmondsia chinensis HOM05D007414 ORTHO05D009482 2.6e-11 74.3 273 28.2
Aa31sc19G30 Aethionema arabicum HOM05D006098 ORTHO05D007470 7.6e-11 72.8 48 72.9
Cre14.g621850 Chlamydomonas reinhardtii HOM05D006098 ORTHO05D007470 9.9e-11 72.4 234 28.2
Ah.12g062800 Amaranthus hybridus HOM05D007414 ORTHO05D009482 7.1e-09 66.2 276 26.8
AUR62032647 Chenopodium quinoa HOM05D007414 ORTHO05D009482 9.3e-09 65.9 354 23.7
Nitab4.5_0004955g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 9.3e-09 65.9 366 24.6
AUR62026859 Chenopodium quinoa HOM05D007414 ORTHO05D009482 2.1e-08 64.7 297 24.6
EL10Ac2g02800 Beta vulgaris HOM05D007414 ORTHO05D009482 3.5e-08 63.9 291 26.8
Cc02_g30210 Coffea canephora HOM05D007414 ORTHO05D009482 6.0e-08 63.2 416 25.0
PGSC0003DMG400018334 Solanum tuberosum HOM05D007414 ORTHO05D009482 6.0e-08 63.2 366 24.3
Manes.11G006000 Manihot esculenta HOM05D007414 ORTHO05D009482 7.9e-08 62.8 385 23.9
COL.COLO4_20658 Corchorus olitorius HOM05D007414 ORTHO05D009482 1.7e-07 61.6 280 24.6
Pp3c11_910 Physcomitrium patens HOM05D007414 ORTHO05D009482 1.7e-07 61.6 387 23.5
arahy.Tifrunner.gnm1.ann1.XZAR1L Arachis hypogaea HOM05D007414 ORTHO05D009482 2.3e-07 61.2 315 24.1
CAN.G1045.37 Capsicum annuum HOM05D007414 ORTHO05D009482 2.3e-07 61.2 365 22.7
Thecc.10G154500 Theobroma cacao HOM05D007414 ORTHO05D009482 3.0e-07 60.8 280 24.6
Atru.chr12.1333 Acer truncatum HOM05D007414 ORTHO05D009482 3.9e-07 60.5 239 26.8
AagrBONN_evm.TU.Sc2ySwM_362.1466 Anthoceros agrestis HOM05D007414 ORTHO05D009482 3.9e-07 60.5 415 23.9
Nitab4.5_0000307g0260 Nicotiana tabacum HOM05D007414 ORTHO05D009482 3.9e-07 60.5 306 25.5
Duzib114G0511 Durio zibethinus HOM05D007414 ORTHO05D009482 5.1e-07 60.1 280 24.6
Potri.001G027600 Populus trichocarpa HOM05D007414 ORTHO05D009482 5.1e-07 60.1 293 25.3
Aa31LG3G3710 Aethionema arabicum HOM05D006098 ORTHO05D007470 1.1e-06 58.9 59 52.5
CsaV3_5G024500 Cucumis sativus L. HOM05D007414 ORTHO05D009482 1.5e-06 58.5 394 22.1
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 1.5e-06 58.5 279 26.2
FAN06G2659 Fragaria x ananassa HOM05D007414 ORTHO05D009482 1.5e-06 58.5 279 26.2
TWI15G0498 Tripterygium wilfordii HOM05D007414 ORTHO05D009482 2.5e-06 57.8 376 22.6
Ciclev10028543m.g Citrus clementina HOM05D007414 ORTHO05D009482 3.3e-06 57.4 336 24.1
RcHm_v2.0_Chr1g0324301 Rosa chinensis HOM05D007414 ORTHO05D009482 4.3e-06 57.0 371 22.9
FAN03G2686 Fragaria x ananassa HOM05D007414 ORTHO05D009482 5.6e-06 56.6 279 25.8
arahy.Tifrunner.gnm1.ann1.GMDI7B Arachis hypogaea HOM05D007414 ORTHO05D009482 7.3e-06 56.2 314 24.2
ClCG01G007530 Citrullus lanatus HOM05D007414 ORTHO05D009482 7.3e-06 56.2 369 22.0
Mapoly0007s0139 Marchantia polymorpha HOM05D007414 ORTHO05D009482 7.3e-06 56.2 418 23.4
FAN10G2712 Fragaria x ananassa HOM05D007414 ORTHO05D009482 9.6e-06 55.8 279 25.4
MD02G1287000 Malus domestica HOM05D007414 ORTHO05D009482 9.6e-06 55.8 288 25.3
PSO384G0147 Papaver somniferum HOM05D007414 ORTHO05D009482 9.6e-06 55.8 403 21.8
Sed0006433 Sechium edule HOM05D007414 ORTHO05D009482 9.6e-06 55.8 350 24.0


User provided reference genes

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