Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 6.7e-284 979.9 474 100.0
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.2e-259 899.4 476 91.0
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 3.1e-257 891.3 524 85.1
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 3.4e-235 818.1 474 83.3
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 5.2e-228 794.3 474 80.6
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.7e-226 789.3 388 98.2
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 6.9e-220 767.3 478 76.8
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 3.8e-218 761.5 480 76.0
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 2.4e-217 758.8 476 75.8
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 1.7e-215 752.7 476 75.0
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.5e-214 749.6 481 75.5
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 7.3e-214 747.3 480 75.0
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 1.6e-213 746.1 482 73.9
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 7.6e-211 737.3 479 74.9
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 7.6e-211 737.3 481 74.6
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 1.7e-210 736.1 484 75.2
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 3.2e-209 731.9 478 73.2
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 5.4e-209 731.1 478 73.4
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 7.1e-209 730.7 484 73.3
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 9.3e-209 730.3 483 74.3
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.6e-208 729.6 481 73.4
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 2.7e-208 728.8 481 74.4
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 4.6e-208 728.0 479 74.9
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 1.8e-207 726.1 476 75.0
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 1.8e-207 726.1 480 73.3
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 8.7e-207 723.8 478 73.8
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 1.5e-206 723.0 476 74.8
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 1.3e-205 719.9 479 74.1
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 2.1e-205 719.2 481 73.8
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 2.1e-205 719.2 479 73.7
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 3.1e-204 715.3 477 72.5
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.5e-203 713.0 480 73.1
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 5.8e-203 711.1 476 72.1
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 7.6e-203 710.7 476 72.1
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 7.6e-203 710.7 479 72.4
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.9e-202 708.8 480 72.9
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.8e-202 708.4 479 72.7
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 4.9e-202 708.0 476 70.8
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 5.5e-201 704.5 482 72.2
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 7.1e-201 704.1 480 72.3
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.2e-200 703.4 479 73.1
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 2.7e-200 702.2 477 70.2
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 4.6e-200 701.4 485 72.2
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 1.5e-198 696.4 481 70.9
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 3.3e-198 695.3 479 69.7
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 9.6e-198 693.7 502 66.9
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 1.6e-197 693.0 487 69.8
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 6.2e-197 691.0 480 69.6
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 8.1e-197 690.6 488 69.3
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 3.1e-196 688.7 483 68.7
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 5.3e-196 688.0 483 70.2
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 1.2e-195 686.8 519 64.5
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 2.6e-195 685.6 486 71.8
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 4.5e-195 684.9 519 64.9
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 1.0e-194 683.7 545 62.8
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 1.7e-194 682.9 480 70.6
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 4.9e-194 681.4 480 68.3
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 6.5e-194 681.0 433 79.7
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 8.4e-194 680.6 519 64.4
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 1.1e-193 680.2 519 64.4
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.4e-193 679.9 518 67.4
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 4.2e-193 678.3 516 67.4
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 7.1e-193 677.6 499 66.5
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 1.3e-191 673.3 476 67.6
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 5.1e-191 671.4 499 68.1
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 1.9e-190 669.5 482 68.0
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 5.7e-190 667.9 436 72.9
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 9.6e-190 667.2 482 67.8
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 1.6e-189 666.4 482 67.4
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 3.7e-189 665.2 520 62.9
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 4.8e-189 664.8 482 67.6
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 8.2e-189 664.1 482 67.4
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 8.2e-189 664.1 484 68.0
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 2.4e-188 662.5 519 63.2
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 1.2e-187 660.2 485 68.9
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 3.4e-187 658.7 478 68.4
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 4.5e-187 658.3 478 66.3
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 2.2e-186 656.0 480 68.1
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 8.5e-186 654.1 438 73.1
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.0e-183 647.1 481 66.1
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 1.1e-182 643.7 476 65.3
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.9e-182 642.9 482 65.1
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 5.7e-182 641.3 475 65.9
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 7.4e-182 641.0 476 67.0
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.3e-181 640.2 485 65.8
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 2.2e-181 639.4 438 70.3
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 9.1e-180 634.0 542 60.3
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 5.0e-178 628.2 486 65.0
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 6.5e-178 627.9 490 65.1
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 3.2e-177 625.5 481 65.1
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 3.2e-177 625.5 476 65.3
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 4.2e-177 625.2 481 65.3
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 9.4e-177 624.0 479 64.1
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 3.6e-176 622.1 487 63.9
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 4.6e-176 621.7 438 69.6
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 7.9e-176 620.9 475 65.3
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 3.0e-175 619.0 475 64.4
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 8.2e-173 610.9 479 64.1
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 8.2e-173 610.9 391 75.7
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 2.4e-172 609.4 479 63.7
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 4.1e-172 608.6 479 63.7
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 4.1e-172 608.6 479 62.6
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 2.6e-171 605.9 477 62.3
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 3.8e-170 602.1 478 63.0
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 3.8e-170 602.1 401 73.8
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 3.2e-169 599.0 478 62.3
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 5.5e-169 598.2 478 62.3
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 9.4e-169 597.4 388 73.5
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 2.1e-168 596.3 482 61.6
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 2.1e-168 596.3 479 62.4
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 2.1e-168 596.3 482 61.6
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.0e-167 594.0 479 61.4
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 2.3e-167 592.8 481 63.4
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 2.0e-166 589.7 390 72.8
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 2.2e-165 586.3 482 61.8
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 1.8e-164 583.2 481 60.3
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 8.2e-157 557.8 440 65.7
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 7.7e-155 551.2 396 68.2
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 8.0e-152 541.2 440 62.3
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 3.0e-151 539.3 349 74.2
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 3.4e-150 535.8 498 54.0
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 1.7e-149 533.5 290 85.5
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 8.3e-149 531.2 498 54.6
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.3e-146 523.9 460 58.3
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 5.5e-145 518.5 409 64.3
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 1.5e-142 510.4 283 82.7
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 4.9e-141 505.4 509 51.1
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 1.4e-140 503.8 434 57.8
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 6.6e-138 495.0 476 53.6
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.5e-134 483.8 306 71.2
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 1.5e-134 483.8 456 54.4
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.3e-133 480.7 287 76.3
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 1.1e-119 434.5 290 67.6
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 8.6e-114 414.8 387 53.5
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 6.2e-112 408.7 287 64.5
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 3.1e-111 406.4 540 43.3
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.5e-105 387.5 290 63.4
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.2e-104 384.4 298 64.4
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 4.7e-104 382.5 302 58.9
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 1.9e-100 370.5 540 41.5
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 5.1e-98 362.5 387 45.5
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 2.0e-94 350.5 307 58.6
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 7.6e-86 322.0 372 48.9
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 2.5e-68 263.8 205 64.4
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 2.2e-64 250.8 435 39.5
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 1.5e-62 244.6 218 57.8
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 7.2e-52 209.1 179 59.8
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 6.7e-50 202.6 239 51.9
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 1.0e-45 188.7 189 54.5
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.2e-44 183.7 154 62.3
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.3e-40 171.8 95 82.1
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 4.8e-40 169.9 93 82.8
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 3.1e-39 167.2 144 58.3
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 3.1e-39 167.2 144 58.3
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.6e-38 164.9 93 79.6
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 2.2e-37 161.0 131 64.1
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 2.5e-36 157.5 127 54.3
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 1.0e-34 152.1 109 67.9
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.5e-33 148.3 179 46.9
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 1.3e-32 145.2 86 77.9
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 1.3e-32 145.2 86 77.9
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 3.5e-30 137.1 165 46.1
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 1.1e-28 132.1 149 47.7
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 5.2e-26 123.2 139 49.6
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 2.3e-18 97.8 66 68.2
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 2.3e-13 81.3 45 82.2


User provided reference genes

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