Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G025975 Populus trichocarpa HOM05D002099 ORTHO05D002080 2.9e-45 184.9 94 100.0
Manes.03G091800 Manihot esculenta HOM05D002099 ORTHO05D002080 3.0e-26 121.7 92 64.1
Dinv18388 Davidia involucrata HOM05D002099 ORTHO05D002080 1.2e-22 109.8 90 61.1
Actinidia12596 Actinidia chinensis HOM05D002099 ORTHO05D002080 3.0e-18 95.1 89 50.6
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 5.1e-18 94.4 90 50.0
Cpa.g.sc77.45 Carica papaya HOM05D002099 ORTHO05D002080 3.7e-16 88.2 74 56.8
DCAR_019606 Daucus carota HOM05D002099 ORTHO05D002080 3.7e-16 88.2 86 44.2
Lj1A826G60 Lonicera japonica HOM05D002099 ORTHO05D002080 1.8e-15 85.9 77 50.6
TWI39G0758 Tripterygium wilfordii HOM05D002099 ORTHO05D002080 4.1e-15 84.7 74 52.7
CSS0029955 Camellia sinensis var. sinensis HOM05D002099 ORTHO05D002080 5.3e-15 84.3 84 50.0
Rhsim06G0211000 Rhododendron simsii HOM05D002099 ORTHO05D002080 5.3e-15 84.3 84 46.4
Cpa.g.c47488 Carica papaya HOM05D002099 ORTHO05D002080 1.2e-14 83.2 71 56.3
TAR629G0376 Trochodendron aralioides HOM05D002099 ORTHO05D002080 2.0e-14 82.4 92 44.6
Cc05_g10880 Coffea canephora HOM05D002099 ORTHO05D002080 5.9e-14 80.9 91 44.0
TAR627G0673 Trochodendron aralioides HOM05D002099 ORTHO05D002080 1.3e-13 79.7 92 43.5
TAR626G1033 Trochodendron aralioides HOM05D002099 ORTHO05D002080 2.2e-13 79.0 90 44.4
Aqoxy4G00213 Aquilegia oxysepala HOM05D002099 ORTHO05D002080 3.8e-13 78.2 89 43.8
MBI06_g16566_MAGBIO Magnolia biondii HOM05D002099 ORTHO05D002080 6.5e-13 77.4 91 41.8
PGSC0003DMG400007064 Solanum tuberosum HOM05D002099 ORTHO05D002080 6.5e-13 77.4 82 46.3
Nitab4.5_0000347g0160 Nicotiana tabacum HOM05D002099 ORTHO05D002080 2.5e-12 75.5 81 43.2
Glyma.15G087400 Glycine max HOM05D002099 ORTHO05D002080 3.2e-12 75.1 89 42.7
Peaxi162Scf00111g01452 Petunia axillaris HOM05D002099 ORTHO05D002080 3.2e-12 75.1 78 46.2
Solyc07g062230.4 Solanum lycopersicum HOM05D002099 ORTHO05D002080 3.2e-12 75.1 82 43.9
SGA_v2.0_scaffold130G34273 Striga asiatica HOM05D002099 ORTHO05D002080 3.2e-12 75.1 64 50.0
Nitab4.5_0004191g0010 Nicotiana tabacum HOM05D002099 ORTHO05D002080 4.2e-12 74.7 81 43.2
MD11G1267400 Malus domestica HOM05D002099 ORTHO05D002080 9.4e-12 73.6 68 54.4
PSO782G0530 Papaver somniferum HOM05D002099 ORTHO05D002080 9.4e-12 73.6 65 50.8
Nn3g21047 Nelumbo nucifera HOM05D002099 ORTHO05D002080 2.1e-11 72.4 71 47.9
Duzib235G1340 Durio zibethinus HOM05D002099 ORTHO05D002080 3.6e-11 71.6 90 37.8
Psat7g067320 Pisum sativum HOM05D002099 ORTHO05D002080 3.6e-11 71.6 71 47.9
TPR.G4518 Trifolium pratense HOM05D002099 ORTHO05D002080 3.6e-11 71.6 86 41.9
Medtr8g087730 Medicago truncatula HOM05D002099 ORTHO05D002080 4.6e-11 71.2 71 47.9
CSS0006478 Camellia sinensis var. sinensis HOM05D002099 ORTHO05D002080 1.0e-10 70.1 68 48.5
Migut.M00702 Erythranthe guttata HOM05D002099 ORTHO05D002080 1.0e-10 70.1 63 55.6
Lalb_Chr15g0086491 Lupinus albus HOM05D002099 ORTHO05D002080 1.0e-10 70.1 89 38.2
Phvul.006G170800 Phaseolus vulgaris HOM05D002099 ORTHO05D002080 1.0e-10 70.1 89 40.4
Ca_17883_v3 Cicer arietinum L. HOM05D002099 ORTHO05D002080 1.4e-10 69.7 71 45.1
TPR.G6783 Trifolium pratense HOM05D002099 ORTHO05D002080 1.4e-10 69.7 71 46.5
Lj4g0025167 Lotus japonicus HOM05D002099 ORTHO05D002080 1.8e-10 69.3 71 47.9
PSO170G6085 Papaver somniferum HOM05D002099 ORTHO05D002080 2.3e-10 68.9 63 47.6
Psat1g193200 Pisum sativum HOM05D002099 ORTHO05D002080 3.0e-10 68.6 92 39.1
ATR0213G022 Amborella trichopoda HOM05D002099 ORTHO05D002080 5.1e-10 67.8 60 53.3
Prupe.4G158100 Prunus persica HOM05D002099 ORTHO05D002080 5.1e-10 67.8 51 62.7
Rhsim02G0137700 Rhododendron simsii HOM05D002099 ORTHO05D002080 5.1e-10 67.8 68 47.1
vmacro10941 Vaccinium macrocarpon HOM05D002099 ORTHO05D002080 5.1e-10 67.8 68 44.1
Dinv32323 Davidia involucrata HOM05D002099 ORTHO05D002080 6.7e-10 67.4 89 40.4
MD00G1007100 Malus domestica HOM05D002099 ORTHO05D002080 6.7e-10 67.4 88 38.6
Actinidia39530 Actinidia chinensis HOM05D002099 ORTHO05D002080 8.8e-10 67.0 68 42.6
Prupe.4G068800 Prunus persica HOM05D002099 ORTHO05D002080 1.5e-09 66.2 88 37.5
Actinidia07658 Actinidia chinensis HOM05D002099 ORTHO05D002080 2.0e-09 65.9 68 42.6
arahy.Tifrunner.gnm1.ann1.68LYJE Arachis hypogaea HOM05D002099 ORTHO05D002080 2.0e-09 65.9 65 46.2
Lsat_1_v5_gn_4_49340 Lactuca sativa HOM05D002099 ORTHO05D002080 2.0e-09 65.9 81 42.0
Thecc.06G163200 Theobroma cacao HOM05D002099 ORTHO05D002080 2.0e-09 65.9 90 36.7
FAN02G1903 Fragaria x ananassa HOM05D002099 ORTHO05D002080 4.3e-09 64.7 89 40.4
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 4.3e-09 64.7 84 38.1
THA.LOC104820633 Tarenaya hassleriana HOM05D002099 ORTHO05D002080 4.3e-09 64.7 92 37.0
Aqoxy1G01946 Aquilegia oxysepala HOM05D002099 ORTHO05D002080 5.7e-09 64.3 67 43.3
Manes.16G044100 Manihot esculenta HOM05D002099 ORTHO05D002080 5.7e-09 64.3 70 42.9
Medtr2g017670 Medicago truncatula HOM05D002099 ORTHO05D002080 5.7e-09 64.3 89 38.2
GSVIVG01014151001 Vitis vinifera HOM05D002099 ORTHO05D002080 5.7e-09 64.3 60 51.7
arahy.Tifrunner.gnm1.ann1.8WY03U Arachis hypogaea HOM05D002099 ORTHO05D002080 9.7e-09 63.5 65 44.6
Lalb_Chr12g0204881 Lupinus albus HOM05D002099 ORTHO05D002080 9.7e-09 63.5 71 40.8
RcHm_v2.0_Chr5g0012061 Rosa chinensis HOM05D002099 ORTHO05D002080 9.7e-09 63.5 70 42.9
VMungo0540G0417 Vigna mungo HOM05D002099 ORTHO05D002080 9.7e-09 63.5 89 38.2
CiPaw.09G136000 Carya illinoinensis HOM05D002099 ORTHO05D002080 1.3e-08 63.2 70 41.4
Manes.05G011866 Manihot esculenta HOM05D002099 ORTHO05D002080 1.3e-08 63.2 70 42.9
Oeu010026.1 Olea europaea HOM05D002099 ORTHO05D002080 1.3e-08 63.2 91 37.4
Duzib160G0890 Durio zibethinus HOM05D002099 ORTHO05D002080 1.7e-08 62.8 71 40.8
Gohir.D10G034000 Gossypium hirsutum HOM05D002099 ORTHO05D002080 1.7e-08 62.8 90 37.8
Gorai.011G035700 Gossypium raimondii HOM05D002099 ORTHO05D002080 1.7e-08 62.8 90 37.8
Peaxi162Scf00854g00214 Petunia axillaris HOM05D002099 ORTHO05D002080 1.7e-08 62.8 67 44.8
Phvul.002G242400 Phaseolus vulgaris HOM05D002099 ORTHO05D002080 1.7e-08 62.8 89 38.2
Sabra04G0041900 Salix brachista HOM05D002099 ORTHO05D002080 1.7e-08 62.8 69 42.0
Ciclev10014980m.g Citrus clementina HOM05D002099 ORTHO05D002080 2.2e-08 62.4 70 48.6
Ciclev10024123m.g Citrus clementina HOM05D002099 ORTHO05D002080 2.2e-08 62.4 44 61.4
MELO3C007187.2 Cucumis melo HOM05D002099 ORTHO05D002080 2.2e-08 62.4 75 42.7
FAN05G1516 Fragaria x ananassa HOM05D002099 ORTHO05D002080 2.2e-08 62.4 89 39.3
Nitab4.5_0001778g0180 Nicotiana tabacum HOM05D002099 ORTHO05D002080 2.2e-08 62.4 90 37.8
TWI53G0885 Tripterygium wilfordii HOM05D002099 ORTHO05D002080 2.2e-08 62.4 91 37.4
AL1G43590 Arabidopsis lyrata HOM05D002099 ORTHO05D002080 2.8e-08 62.0 88 35.2
Oeu039867.2 Olea europaea HOM05D002099 ORTHO05D002080 2.8e-08 62.0 67 38.8
Peaxi162Scf00112g01717 Petunia axillaris HOM05D002099 ORTHO05D002080 2.8e-08 62.0 64 42.2
Sc17g0005550 Simmondsia chinensis HOM05D002099 ORTHO05D002080 2.8e-08 62.0 64 43.8
Carub.0004s1605 Capsella rubella HOM05D002099 ORTHO05D002080 4.8e-08 61.2 82 37.8
QL05p050338 Quercus lobata HOM05D002099 ORTHO05D002080 4.8e-08 61.2 70 41.4
Glyma.05G162700 Glycine max HOM05D002099 ORTHO05D002080 6.3e-08 60.8 71 45.1
Sed0024210 Sechium edule HOM05D002099 ORTHO05D002080 6.3e-08 60.8 85 40.0
Sopen07g030510 Solanum pennellii HOM05D002099 ORTHO05D002080 6.3e-08 60.8 57 50.9
PGSC0003DMG400028410 Solanum tuberosum HOM05D002099 ORTHO05D002080 6.3e-08 60.8 69 39.1
EL10Ac3g05623 Beta vulgaris HOM05D002099 ORTHO05D002080 8.2e-08 60.5 66 43.9
CAN.G375.41 Capsicum annuum HOM05D002099 ORTHO05D002080 8.2e-08 60.5 44 59.1
CAN.G411.28 Capsicum annuum HOM05D002099 ORTHO05D002080 8.2e-08 60.5 84 36.9
Migut.H01402 Erythranthe guttata HOM05D002099 ORTHO05D002080 8.2e-08 60.5 64 42.2
Oeu033707.1 Olea europaea HOM05D002099 ORTHO05D002080 8.2e-08 60.5 66 39.4
SalBow7G4550 Salvia bowleyana HOM05D002099 ORTHO05D002080 8.2e-08 60.5 87 35.6
AT1G29760 Arabidopsis thaliana HOM05D002099 ORTHO05D002080 1.1e-07 60.1 72 37.5
HanXRQChr16g0498641 Helianthus annuus HOM05D002099 ORTHO05D002080 1.1e-07 60.1 64 42.2
Lalb_Chr13g0295371 Lupinus albus HOM05D002099 ORTHO05D002080 1.1e-07 60.1 70 42.9
CsaV3_6G051160 Cucumis sativus L. HOM05D002099 ORTHO05D002080 1.4e-07 59.7 85 37.6
FAN21G2634 Fragaria x ananassa HOM05D002099 ORTHO05D002080 1.4e-07 59.7 63 42.9
HanXRQChr04g0116231 Helianthus annuus HOM05D002099 ORTHO05D002080 1.4e-07 59.7 63 44.4
Lj1A1177T98 Lonicera japonica HOM05D002099 ORTHO05D002080 1.4e-07 59.7 64 40.6
Lj2A316T70 Lonicera japonica HOM05D002099 ORTHO05D002080 1.4e-07 59.7 85 42.4
SalBow7G2784 Salvia bowleyana HOM05D002099 ORTHO05D002080 1.4e-07 59.7 82 35.4
Aa31LG6G5860 Aethionema arabicum HOM05D002099 ORTHO05D002080 1.8e-07 59.3 71 36.6
ClCG01G024030 Citrullus lanatus HOM05D002099 ORTHO05D002080 2.4e-07 58.9 75 40.0
FAN14G1923 Fragaria x ananassa HOM05D002099 ORTHO05D002080 2.4e-07 58.9 89 38.2
Os09g0534000 Oryza sativa ssp. japonica HOM05D002099 ORTHO05D002080 2.4e-07 58.9 66 39.4
Hma1.2p1_1150F.1_g261800 Hydrangea macrophylla HOM05D002099 ORTHO05D002080 3.1e-07 58.5 63 47.6
Sabra11G0056600 Salix brachista HOM05D002099 ORTHO05D002080 3.1e-07 58.5 64 40.6
Sabra11G0060000 Salix brachista HOM05D002099 ORTHO05D002080 3.1e-07 58.5 64 40.6
Sp1g25650 Schrenkiella parvula HOM05D002099 ORTHO05D002080 3.1e-07 58.5 72 36.1
Solyc02g071900.3 Solanum lycopersicum HOM05D002099 ORTHO05D002080 3.1e-07 58.5 69 37.7
Sopen02g020890 Solanum pennellii HOM05D002099 ORTHO05D002080 3.1e-07 58.5 69 37.7
GSVIVG01021275001 Vitis vinifera HOM05D002099 ORTHO05D002080 3.1e-07 58.5 66 45.5
arahy.Tifrunner.gnm1.ann1.UFQ84G Arachis hypogaea HOM05D002099 ORTHO05D002080 4.1e-07 58.2 70 40.0
Cc02_g15900 Coffea canephora HOM05D002099 ORTHO05D002080 4.1e-07 58.2 68 39.7
FAN16G0395 Fragaria x ananassa HOM05D002099 ORTHO05D002080 4.1e-07 58.2 63 44.4
Hma1.2p1_0050F.1_g028950 Hydrangea macrophylla HOM05D002099 ORTHO05D002080 4.1e-07 58.2 56 50.0
CDE02G2274 Ceratophyllum demersum HOM05D002099 ORTHO05D002080 5.3e-07 57.8 67 35.8
FvH4_6g08010 Fragaria vesca HOM05D002099 ORTHO05D002080 6.9e-07 57.4 68 39.7
Gohir.A06G198600 Gossypium hirsutum HOM05D002099 ORTHO05D002080 6.9e-07 57.4 72 38.9
unitig_748.g7815 Utricularia gibba HOM05D002099 ORTHO05D002080 9.1e-07 57.0 64 39.1
BcaB07g32563 Brassica carinata HOM05D002099 ORTHO05D002080 1.2e-06 56.6 70 40.0
Thhalv10007317m.g Eutrema salsugineum HOM05D002099 ORTHO05D002080 1.2e-06 56.6 72 36.1
FAN21G3358 Fragaria x ananassa HOM05D002099 ORTHO05D002080 1.2e-06 56.6 46 56.5
FAN25G0224 Fragaria x ananassa HOM05D002099 ORTHO05D002080 1.2e-06 56.6 64 45.3
Hund21456 Selenicereus undatus HOM05D002099 ORTHO05D002080 1.2e-06 56.6 64 45.3
arahy.Tifrunner.gnm1.ann1.NR0K7A Arachis hypogaea HOM05D002099 ORTHO05D002080 1.5e-06 56.2 65 41.5
BcaC05g26991 Brassica carinata HOM05D002099 ORTHO05D002080 1.5e-06 56.2 70 37.1
C05p28510 Brassica napus HOM05D002099 ORTHO05D002080 1.5e-06 56.2 70 37.1
BolC5t31575H Brassica oleracea HOM05D002099 ORTHO05D002080 1.5e-06 56.2 70 37.1
Potri.011G072200 Populus trichocarpa HOM05D002099 ORTHO05D002080 1.5e-06 56.2 83 34.9
PGR031G0337 Punica granatum HOM05D002099 ORTHO05D002080 1.5e-06 56.2 69 37.7
Sed0019424 Sechium edule HOM05D002099 ORTHO05D002080 1.5e-06 56.2 74 37.8
DCAR_003969 Daucus carota HOM05D002099 ORTHO05D002080 2.0e-06 55.8 89 32.6
Atru.chr10.1518 Acer truncatum HOM05D002099 ORTHO05D002080 2.6e-06 55.5 63 42.9
CARHR029130 Cardamine hirsuta HOM05D002099 ORTHO05D002080 2.6e-06 55.5 72 34.7
FvH4_3g07070 Fragaria vesca HOM05D002099 ORTHO05D002080 2.6e-06 55.5 63 39.7
FAN11G3654 Fragaria x ananassa HOM05D002099 ORTHO05D002080 2.6e-06 55.5 63 39.7
FAN16G3110 Fragaria x ananassa HOM05D002099 ORTHO05D002080 4.5e-06 54.7 64 43.8
A09p36690 Brassica napus HOM05D002099 ORTHO05D002080 5.9e-06 54.3 70 35.7
ECA234G2299 Erigeron canadensis HOM05D002099 ORTHO05D002080 5.9e-06 54.3 81 33.3
Carub.0001s2800 Capsella rubella HOM05D002099 ORTHO05D002080 7.7e-06 53.9 77 32.5
Eucgr.D00416 Eucalyptus grandis HOM05D002099 ORTHO05D002080 7.7e-06 53.9 68 35.3
SGA_v2.0_scaffold106G30609 Striga asiatica HOM05D002099 ORTHO05D002080 7.7e-06 53.9 79 35.4


User provided reference genes

Program Settings