Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 2.4e-56 221.9 104 100.0
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 3.4e-39 164.9 91 83.5
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 2.9e-38 161.8 91 81.3
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 4.9e-38 161.0 91 82.4
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 4.9e-38 161.0 91 80.2
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 6.4e-38 160.6 91 82.4
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 1.1e-37 159.8 91 81.3
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 2.4e-37 158.7 91 79.1
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 2.4e-37 158.7 91 81.3
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 2.4e-37 158.7 91 81.3
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 2.4e-37 158.7 91 81.3
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 2.4e-37 158.7 91 80.2
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 3.2e-37 158.3 91 79.1
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 3.2e-37 158.3 91 78.0
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 3.2e-37 158.3 91 78.0
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 4.2e-37 157.9 91 79.1
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 4.2e-37 157.9 91 79.1
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 5.4e-37 157.5 91 78.0
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 5.4e-37 157.5 91 78.0
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 5.4e-37 157.5 91 78.0
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 7.1e-37 157.1 91 80.2
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 7.1e-37 157.1 91 79.1
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 1.2e-36 156.4 91 80.2
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 1.2e-36 156.4 91 80.2
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.6e-36 156.0 91 76.9
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 1.6e-36 156.0 91 76.9
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 2.1e-36 155.6 91 75.8
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.1e-36 155.6 91 76.9
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 2.7e-36 155.2 91 80.2
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.6e-36 154.5 91 75.8
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 4.6e-36 154.5 91 78.0
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 4.6e-36 154.5 91 79.1
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 4.6e-36 154.5 91 78.0
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 6.0e-36 154.1 91 75.8
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 7.9e-36 153.7 91 78.0
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 7.9e-36 153.7 91 76.9
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 7.9e-36 153.7 91 76.9
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 1.0e-35 153.3 91 78.0
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 1.0e-35 153.3 91 73.6
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.0e-35 153.3 91 76.9
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 1.0e-35 153.3 91 76.9
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 1.0e-35 153.3 91 76.9
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 1.0e-35 153.3 91 78.0
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 1.0e-35 153.3 91 78.0
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 1.0e-35 153.3 91 76.9
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 1.3e-35 152.9 91 76.9
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 1.8e-35 152.5 91 74.7
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 1.8e-35 152.5 91 75.8
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 2.3e-35 152.1 91 75.8
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 3.9e-35 151.4 91 75.8
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 3.9e-35 151.4 91 74.7
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 3.9e-35 151.4 91 73.6
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 5.1e-35 151.0 91 74.7
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 5.1e-35 151.0 91 73.6
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 8.7e-35 150.2 91 73.6
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 8.7e-35 150.2 91 73.6
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 8.7e-35 150.2 91 73.6
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 1.1e-34 149.8 91 74.7
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 1.1e-34 149.8 91 73.6
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 1.5e-34 149.4 91 73.6
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 1.5e-34 149.4 91 74.7
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 1.9e-34 149.1 91 75.8
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 2.5e-34 148.7 91 73.6
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.5e-34 148.7 91 73.6
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.5e-34 148.7 91 73.6
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.5e-34 148.7 91 73.6
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.5e-34 148.7 91 73.6
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.5e-34 148.7 91 73.6
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.5e-34 148.7 91 73.6
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 3.3e-34 148.3 92 75.0
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 3.3e-34 148.3 91 73.6
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 5.6e-34 147.5 91 70.3
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 5.6e-34 147.5 91 70.3
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 7.4e-34 147.1 91 73.6
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 7.4e-34 147.1 91 71.4
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 7.4e-34 147.1 91 71.4
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.3e-33 146.4 91 71.4
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 1.3e-33 146.4 91 71.4
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 1.3e-33 146.4 91 73.6
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 1.3e-33 146.4 91 73.6
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 1.3e-33 146.4 91 69.2
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 2.1e-33 145.6 91 70.3
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 2.8e-33 145.2 91 71.4
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 2.8e-33 145.2 91 71.4
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 2.8e-33 145.2 91 71.4
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 3.7e-33 144.8 92 72.8
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 3.7e-33 144.8 91 71.4
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 4.8e-33 144.4 91 70.3
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 4.8e-33 144.4 91 70.3
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 8.1e-33 143.7 91 69.2
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 1.1e-32 143.3 91 70.3
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 1.4e-32 142.9 91 68.1
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.4e-32 142.9 91 71.4
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.4e-32 142.9 91 71.4
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.4e-32 142.9 91 70.3
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 1.8e-32 142.5 91 72.5
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 3.1e-32 141.7 91 68.1
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 4.0e-32 141.4 91 68.1
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 4.0e-32 141.4 91 69.2
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 5.3e-32 141.0 91 72.5
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 5.3e-32 141.0 91 72.5
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 5.3e-32 141.0 91 69.2
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 5.3e-32 141.0 91 69.2
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 1.2e-31 139.8 91 71.4
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 1.5e-31 139.4 91 71.4
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 3.4e-31 138.3 88 68.2
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 3.4e-31 138.3 91 69.2
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 5.8e-31 137.5 91 70.3
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 5.8e-31 137.5 91 70.3
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 7.6e-31 137.1 91 70.3
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 7.6e-31 137.1 91 70.3
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 7.6e-31 137.1 91 70.3
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 1.3e-30 136.3 91 68.1
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 1.7e-30 136.0 91 69.2
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 2.9e-30 135.2 91 69.2
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 1.1e-29 133.3 91 68.1
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 1.1e-29 133.3 91 68.1
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 1.1e-29 133.3 91 68.1
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 1.1e-29 133.3 91 68.1
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 1.1e-29 133.3 91 68.1
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 1.1e-29 133.3 91 68.1
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 2.5e-29 132.1 91 67.0
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 2.5e-29 132.1 91 68.1
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 3.2e-29 131.7 91 68.1
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 3.2e-29 131.7 91 68.1
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 5.5e-29 131.0 91 68.1
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 1.3e-27 126.3 88 67.0
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 1.4e-24 116.3 75 66.7
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 1.8e-24 115.9 91 62.6
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 2.4e-24 115.5 85 60.0
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 9.0e-24 113.6 96 56.2
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 1.5e-23 112.8 91 53.8
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 7.6e-23 110.5 91 56.0
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 1.0e-22 110.2 75 68.0
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 1.1e-21 106.7 91 58.2
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 3.7e-17 91.7 72 56.9
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 9.0e-16 87.0 81 49.4
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 4.3e-10 68.2 72 47.2
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 5.7e-10 67.8 85 36.5
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 7.4e-10 67.4 42 73.8
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 7.4e-10 67.4 42 73.8


User provided reference genes

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