Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G022600 Populus trichocarpa HOM05D005395 ORTHO05D006352 0.0e+00 2458.7 1220 100.0
Sabra03G0014300 Salix brachista HOM05D005395 ORTHO05D006352 0.0e+00 2194.9 1235 89.8
Prupe.2G012600 Prunus persica HOM05D005395 ORTHO05D006352 0.0e+00 1240.7 1267 53.2
Cfa008089 Carpinus fangiana HOM05D005395 ORTHO05D006352 0.0e+00 1216.8 1301 52.7
MD07G1010300 Malus domestica HOM05D005395 ORTHO05D006352 0.0e+00 1202.6 1266 52.8
Manes.10G091300 Manihot esculenta HOM05D005395 ORTHO05D006352 0.0e+00 1187.6 1258 52.7
TAR633G2667 Trochodendron aralioides HOM05D005395 ORTHO05D006352 0.0e+00 1187.2 1312 51.1
RcHm_v2.0_Chr1g0315901 Rosa chinensis HOM05D005395 ORTHO05D006352 0.0e+00 1182.9 1276 52.0
FAN06G4072 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1164.8 1271 51.2
FAN03G2830 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1162.9 1271 50.6
Ciclev10030541m.g Citrus clementina HOM05D005395 ORTHO05D006352 0.0e+00 1161.4 1269 51.4
FvH4_7g01000 Fragaria vesca HOM05D005395 ORTHO05D006352 0.0e+00 1160.6 1271 51.1
FAN10G2468 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1152.1 1282 50.6
QL02p026227 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1149.0 1238 52.6
TWI09G1525 Tripterygium wilfordii HOM05D005395 ORTHO05D006352 0.0e+00 1130.5 1335 48.5
QL11p003492 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1129.8 1277 50.4
QL05p060653 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1124.0 1314 50.3
Rhsim07G0055200 Rhododendron simsii HOM05D005395 ORTHO05D006352 0.0e+00 1121.3 1325 48.3
Nn7g36191 Nelumbo nucifera HOM05D005395 ORTHO05D006352 0.0e+00 1088.6 1309 47.8
GSVIVG01032086001 Vitis vinifera HOM05D005395 ORTHO05D006352 0.0e+00 1085.9 1246 49.4
Phvul.005G021500 Phaseolus vulgaris HOM05D005395 ORTHO05D006352 0.0e+00 1084.7 1276 48.7
QL12p011919 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1081.6 1226 50.0
Sed0006979 Sechium edule HOM05D005395 ORTHO05D006352 0.0e+00 1076.6 1260 48.1
CANSAT78G1614 Cannabis sativa HOM05D005395 ORTHO05D006352 0.0e+00 1075.8 1252 48.1
Psat5g193800 Pisum sativum HOM05D005395 ORTHO05D006352 0.0e+00 1075.8 1274 47.6
Lj3g0013961 Lotus japonicus HOM05D005395 ORTHO05D006352 1.8e-309 1066.2 1275 47.9
Glyma.15G274000 Glycine max HOM05D005395 ORTHO05D006352 1.3e-307 1060.1 1278 47.7
Glyma.08G155900 Glycine max HOM05D005395 ORTHO05D006352 8.0e-305 1050.8 1272 48.3
ClCG10G012430 Citrullus lanatus HOM05D005395 ORTHO05D006352 2.3e-304 1049.3 1254 48.6
arahy.Tifrunner.gnm1.ann1.XBA78H Arachis hypogaea HOM05D005395 ORTHO05D006352 1.5e-303 1046.6 1274 47.0
VMungo1080G1687 Vigna mungo HOM05D005395 ORTHO05D006352 8.3e-302 1040.8 1270 47.0
CiPaw.13G004500 Carya illinoinensis HOM05D005395 ORTHO05D006352 5.4e-293 1011.5 990 56.7
Thecc.10G136000 Theobroma cacao HOM05D005395 ORTHO05D006352 8.0e-281 971.1 1089 48.9
Gorai.012G022200 Gossypium raimondii HOM05D005395 ORTHO05D006352 4.9e-278 961.8 1257 43.9
Gohir.D04G018600 Gossypium hirsutum HOM05D005395 ORTHO05D006352 1.4e-277 960.3 1254 44.0
Gohir.A05G396700 Gossypium hirsutum HOM05D005395 ORTHO05D006352 1.5e-274 950.3 1252 43.6
Oeu063172.1 Olea europaea HOM05D005395 ORTHO05D006352 3.2e-269 932.6 1300 43.7
Lj7C570T8 Lonicera japonica HOM05D005395 ORTHO05D006352 9.2e-269 931.0 990 51.9
SGA_v2.0_scaffold119G32730 Striga asiatica HOM05D005395 ORTHO05D006352 1.7e-267 926.8 1266 43.8
Nitab4.5_0013258g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 4.3e-266 922.2 1305 43.6
Nitab4.5_0000634g0140 Nicotiana tabacum HOM05D005395 ORTHO05D006352 2.0e-263 913.3 1273 44.2
Aqoxy1G02896 Aquilegia oxysepala HOM05D005395 ORTHO05D006352 3.4e-263 912.5 1315 41.9
Hund24995 Selenicereus undatus HOM05D005395 ORTHO05D006352 5.1e-259 898.7 1280 41.6
Solyc01g087095.2 Solanum lycopersicum HOM05D005395 ORTHO05D006352 2.5e-258 896.3 1260 43.0
MBI03_g07304_MAGBIO Magnolia biondii HOM05D005395 ORTHO05D006352 9.6e-258 894.4 1442 40.7
MELO3C023972.2 Cucumis melo HOM05D005395 ORTHO05D006352 2.1e-257 893.3 1258 43.9
Sopen01g034170 Solanum pennellii HOM05D005395 ORTHO05D006352 2.8e-257 892.9 1261 43.3
PGR042G3169 Punica granatum HOM05D005395 ORTHO05D006352 6.2e-257 891.7 1281 41.9
arahy.Tifrunner.gnm1.ann1.LX21RY Arachis hypogaea HOM05D005395 ORTHO05D006352 3.1e-256 889.4 1274 41.8
PSO339G2846 Papaver somniferum HOM05D005395 ORTHO05D006352 9.0e-256 887.9 1276 41.9
COL.COLO4_04642 Corchorus olitorius HOM05D005395 ORTHO05D006352 7.6e-247 858.2 1291 41.4
HanXRQChr12g0379891 Helianthus annuus HOM05D005395 ORTHO05D006352 3.1e-240 836.3 1242 41.6
Ca_14376_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 4.0e-240 835.9 825 52.8
EL10Ac1g02254 Beta vulgaris HOM05D005395 ORTHO05D006352 7.6e-239 831.6 1300 40.5
AUR62041247 Chenopodium quinoa HOM05D005395 ORTHO05D006352 6.7e-235 818.5 1277 40.6
vmacro13663 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 1.4e-232 810.8 841 50.8
Peaxi162Scf00428g00318 Petunia axillaris HOM05D005395 ORTHO05D006352 9.0e-232 808.1 1280 39.2
AT5G16850 Arabidopsis thaliana HOM05D005395 ORTHO05D006352 1.1e-226 791.2 1248 39.1
Sp6g27270 Schrenkiella parvula HOM05D005395 ORTHO05D006352 4.1e-224 782.7 1243 38.9
C09p60230 Brassica napus HOM05D005395 ORTHO05D006352 6.9e-224 781.9 1247 39.1
BolC9t58856H Brassica oleracea HOM05D005395 ORTHO05D006352 1.2e-223 781.2 1247 39.1
CAN.G1820.1 Capsicum annuum HOM05D005395 ORTHO05D006352 3.4e-223 779.6 987 46.5
CARHR196310 Cardamine hirsuta HOM05D005395 ORTHO05D006352 7.6e-223 778.5 1246 38.6
A10p22380 Brassica napus HOM05D005395 ORTHO05D006352 1.3e-222 777.7 1243 39.3
Carub.0006s1507 Capsella rubella HOM05D005395 ORTHO05D006352 8.5e-222 775.0 1239 38.4
Migut.B01303 Erythranthe guttata HOM05D005395 ORTHO05D006352 1.1e-221 774.6 1163 41.4
BraA10t44297Z Brassica rapa HOM05D005395 ORTHO05D006352 2.7e-220 770.0 1241 38.8
Thhalv10012498m.g Eutrema salsugineum HOM05D005395 ORTHO05D006352 5.7e-218 762.3 1242 38.7
Atru.chr11.730 Acer truncatum HOM05D005395 ORTHO05D006352 3.4e-215 753.1 890 47.9
DCAR_005449 Daucus carota HOM05D005395 ORTHO05D006352 4.7e-212 742.7 876 47.0
Aa31sc160G20 Aethionema arabicum HOM05D005395 ORTHO05D006352 3.4e-207 726.5 1281 36.7
unitig_0.g1385 Utricularia gibba HOM05D005395 ORTHO05D006352 7.7e-207 725.3 1246 38.4
Actinidia24666 Actinidia chinensis HOM05D005395 ORTHO05D006352 3.5e-191 673.3 1150 39.7
Migut.B01025 Erythranthe guttata HOM05D005395 ORTHO05D006352 5.2e-187 659.4 878 44.0
Sc04g0005700 Simmondsia chinensis HOM05D005395 ORTHO05D006352 1.5e-186 657.9 841 43.0
BcaC04g18841 Brassica carinata HOM05D005395 ORTHO05D006352 3.0e-179 633.6 1241 34.8
CsaV3_3G032200 Cucumis sativus L. HOM05D005395 ORTHO05D006352 3.0e-179 633.6 927 42.2
AUR62014136 Chenopodium quinoa HOM05D005395 ORTHO05D006352 6.2e-164 582.8 1478 30.0
Lsat_1_v5_gn_4_31580 Lactuca sativa HOM05D005395 ORTHO05D006352 7.8e-159 565.8 1102 36.5
SHI19147 Sapria himalayana HOM05D005395 ORTHO05D006352 1.2e-154 552.0 900 40.6
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 1.5e-149 535.0 576 50.2
Pp3c1_42700 Physcomitrium patens HOM05D005395 ORTHO05D006352 1.3e-129 468.8 1322 29.7
HPP92_011342 Vanilla planifolia HOM05D005395 ORTHO05D006352 4.9e-129 466.8 530 47.5
Lalb_Chr13g0291151 Lupinus albus HOM05D005395 ORTHO05D006352 1.4e-128 465.3 366 63.4
Atru.chr11.731 Acer truncatum HOM05D005395 ORTHO05D006352 1.0e-126 459.1 369 64.2
SHI19148 Sapria himalayana HOM05D005395 ORTHO05D006352 4.3e-125 453.8 384 61.7
vmacro19894 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 7.6e-122 443.0 475 49.1
AagrBONN_evm.TU.Sc2ySwM_344.2351 Anthoceros agrestis HOM05D005395 ORTHO05D006352 1.7e-121 441.8 775 35.1
TPR.G30923 Trifolium pratense HOM05D005395 ORTHO05D006352 6.4e-121 439.9 392 58.2
Mapoly0009s0015 Marchantia polymorpha HOM05D005395 ORTHO05D006352 5.5e-120 436.8 1138 30.1
Hma1.2p1_0293F.1_g116170 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 4.9e-113 413.7 393 55.5
Lalb_Chr13g0291141 Lupinus albus HOM05D005395 ORTHO05D006352 1.3e-110 405.6 390 53.3
ATR0681G222 Amborella trichopoda HOM05D005395 ORTHO05D006352 1.0e-105 389.4 832 33.9
Cpa.g.sc245.16 Carica papaya HOM05D005395 ORTHO05D006352 1.4e-104 385.6 316 60.8
QL05p050737 Quercus lobata HOM05D005395 ORTHO05D006352 1.7e-81 308.9 431 44.8
HPP92_011265 Vanilla planifolia HOM05D005395 ORTHO05D006352 1.2e-71 276.2 293 50.2
Cpa.g.sc245.15 Carica papaya HOM05D005395 ORTHO05D006352 7.5e-69 266.9 256 57.4
SEGI_03843 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 3.4e-61 241.5 428 34.8
SEGI_22370 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 8.3e-60 236.9 351 40.2
SEGI_30633 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 8.3e-60 236.9 351 40.2
Lalb_Chr13g0291131 Lupinus albus HOM05D005395 ORTHO05D006352 2.3e-57 228.8 442 35.7
MCO03G604 Micromonas commoda HOM05D005395 ORTHO05D006352 1.1e-56 226.5 1058 24.1
Nitab4.5_0002179g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 2.3e-54 218.8 203 55.2
SEGI_09183 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.2e-50 206.5 645 27.6
PSO384G3069 Papaver somniferum HOM05D005395 ORTHO05D006352 7.8e-50 203.8 232 48.3
Hma1.2p1_0293F.1_g116180 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 2.6e-45 188.7 225 46.2
Cfa026815 Carpinus fangiana HOM05D005395 ORTHO05D006352 1.6e-42 179.5 572 26.6
Dinv12038 Davidia involucrata HOM05D005395 ORTHO05D006352 6.6e-41 174.1 181 51.9
Lj7P570T32 Lonicera japonica HOM05D005395 ORTHO05D006352 2.2e-36 159.1 194 45.9
CAN.G1820.3 Capsicum annuum HOM05D005395 ORTHO05D006352 1.1e-35 156.8 184 47.3
BcaC04g18840 Brassica carinata HOM05D005395 ORTHO05D006352 1.3e-25 123.2 299 31.4
Cre04.g213652 Chlamydomonas reinhardtii HOM05D005395 ORTHO05D006352 2.3e-25 122.5 178 39.3
CBR_g45714 Chara braunii HOM05D005395 ORTHO05D006352 3.9e-25 121.7 348 28.4
CDE07G1503 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 8.1e-23 114.0 122 50.0
CDE07G0235 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 1.4e-22 113.2 175 37.1
Ca_14375_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 9.9e-21 107.1 344 31.7
CBR_g45710 Chara braunii HOM05D005395 ORTHO05D006352 1.7e-20 106.3 184 38.0
ATR0829G203 Amborella trichopoda HOM05D005395 ORTHO05D006352 6.4e-20 104.4 194 34.5
Cpa.g.sc245.13 Carica papaya HOM05D005395 ORTHO05D006352 4.2e-19 101.7 144 40.3
SEGI_37340 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.7e-17 96.3 153 38.6
CSS0040942 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 2.8e-15 89.0 82 61.0
PSO384G2197 Papaver somniferum HOM05D005395 ORTHO05D006352 2.8e-15 89.0 79 53.2
Os12g0293100 Oryza sativa ssp. japonica HOM05D005395 ORTHO05D006352 1.4e-14 86.7 306 27.5
QL02p026296 Quercus lobata HOM05D005395 ORTHO05D006352 3.1e-14 85.5 120 38.3
CSS0041236 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 4.5e-13 81.6 82 59.8
Aa31sc690G30 Aethionema arabicum HOM05D005395 ORTHO05D006352 7.6e-13 80.9 76 50.0
CSS0036458 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 3.8e-12 78.6 82 58.5
Lsat_1_v5_gn_3_2761 Lactuca sativa HOM05D005395 ORTHO05D006352 1.1e-11 77.0 131 34.4
CSS0042886 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 7.9e-10 70.9 82 52.4
DCAR_024213 Daucus carota HOM05D005395 ORTHO05D006352 1.0e-09 70.5 80 46.2
DCAR_005448 Daucus carota HOM05D005395 ORTHO05D006352 3.9e-09 68.6 80 45.0
SHI19146 Sapria himalayana HOM05D005395 ORTHO05D002065 6.7e-09 67.8 89 41.6
CDE07G0311 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 8.7e-09 67.4 69 49.3
BcaC06g35111 Brassica carinata HOM05D020491 ORTHO05D006352 1.1e-08 67.0 86 43.0
CBR_g45716 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-07 63.2 143 32.9
Dinv18440 Davidia involucrata HOM05D005395 ORTHO05D006352 2.1e-07 62.8 48 64.6
Nitab4.5_0002179g0030 Nicotiana tabacum HOM05D005395 ORTHO05D006352 5.3e-06 58.2 90 40.0
BcaB02g11432 Brassica carinata HOM05D020491 ORTHO05D006352 9.0e-06 57.4 72 44.4


User provided reference genes

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