Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 5.8e-36 153.7 77 100.0
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 6.2e-30 133.7 77 84.4
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 6.2e-30 133.7 77 84.4
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 3.1e-29 131.3 77 85.7
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 3.1e-29 131.3 77 84.4
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 6.9e-29 130.2 77 83.1
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 9.0e-29 129.8 77 83.1
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 1.5e-28 129.0 77 84.4
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 1.0e-27 126.3 77 80.5
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 1.0e-27 126.3 77 81.8
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 1.3e-27 125.9 77 80.5
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 4.9e-27 124.0 77 79.2
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 4.9e-27 124.0 77 81.8
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 4.9e-27 124.0 77 79.2
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 4.9e-27 124.0 77 80.5
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 6.5e-27 123.6 77 79.2
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 6.5e-27 123.6 76 78.9
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 8.4e-27 123.2 77 77.9
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 8.4e-27 123.2 77 77.9
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 8.4e-27 123.2 77 77.9
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 8.4e-27 123.2 77 76.6
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 8.4e-27 123.2 77 76.6
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 1.1e-26 122.9 77 79.2
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 1.4e-26 122.5 77 77.9
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 3.2e-26 121.3 77 75.3
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 4.2e-26 120.9 77 76.6
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 5.5e-26 120.6 77 76.6
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.2e-25 119.4 77 76.6
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 1.2e-25 119.4 77 76.6
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 2.1e-25 118.6 77 75.3
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 6.0e-25 117.1 77 74.0
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 6.0e-25 117.1 77 74.0
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 6.0e-25 117.1 77 75.3
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 6.0e-25 117.1 77 74.0
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 6.0e-25 117.1 77 74.0
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 7.9e-25 116.7 77 71.4
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 1.3e-24 115.9 77 71.4
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 1.3e-24 115.9 77 75.3
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.8e-24 115.5 77 71.4
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 1.8e-24 115.5 77 74.0
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 2.3e-24 115.2 77 74.0
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 3.0e-24 114.8 77 71.4
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 3.0e-24 114.8 77 72.7
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 3.0e-24 114.8 77 75.3
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 3.0e-24 114.8 77 75.3
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 5.1e-24 114.0 77 72.7
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 5.1e-24 114.0 77 74.0
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 5.1e-24 114.0 78 76.9
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 5.1e-24 114.0 77 72.7
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 6.7e-24 113.6 77 70.1
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 6.7e-24 113.6 77 70.1
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 6.7e-24 113.6 77 70.1
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 8.7e-24 113.2 77 70.1
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 8.7e-24 113.2 77 70.1
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 8.7e-24 113.2 77 72.7
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 1.1e-23 112.8 77 72.7
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 1.1e-23 112.8 77 72.7
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 1.1e-23 112.8 77 72.7
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 1.5e-23 112.5 77 75.3
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.5e-23 112.5 77 72.7
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.9e-23 112.1 77 70.1
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 2.5e-23 111.7 77 72.7
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 3.3e-23 111.3 77 71.4
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 3.3e-23 111.3 77 67.5
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 4.3e-23 110.9 69 78.3
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 4.3e-23 110.9 77 70.1
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 7.4e-23 110.2 77 70.1
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 7.4e-23 110.2 77 71.4
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 7.4e-23 110.2 77 70.1
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 7.4e-23 110.2 77 71.4
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 7.4e-23 110.2 77 71.4
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 9.6e-23 109.8 77 68.8
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 1.3e-22 109.4 77 67.5
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.3e-22 109.4 77 67.5
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.3e-22 109.4 77 67.5
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 1.3e-22 109.4 77 70.1
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 1.6e-22 109.0 77 68.8
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 1.6e-22 109.0 77 70.1
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 1.6e-22 109.0 78 74.4
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 1.6e-22 109.0 77 68.8
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 1.6e-22 109.0 77 68.8
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 2.1e-22 108.6 77 68.8
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 2.1e-22 108.6 77 70.1
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 2.8e-22 108.2 77 68.8
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 3.7e-22 107.8 77 70.1
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 3.7e-22 107.8 77 68.8
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 3.7e-22 107.8 77 68.8
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 6.3e-22 107.1 77 67.5
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 6.3e-22 107.1 77 67.5
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 8.2e-22 106.7 77 67.5
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 8.2e-22 106.7 77 68.8
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 8.2e-22 106.7 77 68.8
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 8.2e-22 106.7 69 75.4
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 1.1e-21 106.3 77 67.5
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 1.1e-21 106.3 77 67.5
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 1.1e-21 106.3 77 66.2
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 1.1e-21 106.3 77 66.2
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 1.4e-21 105.9 77 67.5
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 1.4e-21 105.9 77 67.5
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 1.4e-21 105.9 77 67.5
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 1.8e-21 105.5 77 66.2
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.8e-21 105.5 77 66.2
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 1.8e-21 105.5 77 66.2
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 1.8e-21 105.5 77 67.5
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 1.8e-21 105.5 77 66.2
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 4.1e-21 104.4 77 62.3
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 4.1e-21 104.4 77 64.9
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 5.3e-21 104.0 77 66.2
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 5.3e-21 104.0 77 66.2
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 5.3e-21 104.0 77 64.9
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 6.9e-21 103.6 77 66.2
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 6.9e-21 103.6 77 62.3
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 9.0e-21 103.2 70 72.9
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 1.5e-20 102.4 77 63.6
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 2.0e-20 102.1 77 63.6
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 3.8e-19 97.8 71 67.6
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 5.0e-19 97.4 77 62.3
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 6.5e-19 97.1 76 63.2
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 8.5e-19 96.7 77 62.3
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 1.1e-18 96.3 69 66.7
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.7e-17 91.7 77 55.8
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 3.6e-17 91.3 77 54.5
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 5.1e-16 87.4 73 58.9
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 5.1e-16 87.4 77 55.8
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 6.7e-16 87.0 77 54.5
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 9.7e-15 83.2 50 78.0
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 9.7e-15 83.2 77 53.2
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 1.6e-14 82.4 77 51.9
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 6.3e-14 80.5 137 38.7
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 2.4e-13 78.6 53 67.9
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 6.9e-13 77.0 77 46.8
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 6.9e-13 77.0 77 46.8
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 1.2e-12 76.3 78 50.0
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 2.0e-12 75.5 46 80.4
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 3.2e-10 68.2 46 73.9
VMungo0540G1689 Vigna mungo HOM05D004322 ORTHO05D005033 3.0e-08 61.6 40 77.5
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 9.7e-07 56.6 34 73.5
TAR381G0540 Trochodendron aralioides HOM05D004322 ORTHO05D005033 8.2e-06 53.5 43 60.5


User provided reference genes

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