Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 2.7e-244 848.2 420 100.0
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 9.3e-237 823.2 420 96.4
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 5.5e-221 770.8 420 90.5
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 6.1e-220 767.3 420 88.8
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 1.9e-213 745.7 420 85.2
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 2.3e-203 712.2 420 80.7
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.3e-201 706.4 420 81.2
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.1e-200 703.4 420 80.7
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 1.4e-200 703.0 420 80.2
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 2.4e-200 702.2 420 80.2
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 4.1e-200 701.4 420 80.5
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 5.5e-197 691.0 420 77.9
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 5.5e-197 691.0 420 78.3
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 1.2e-196 689.9 420 78.1
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 6.1e-196 687.6 420 77.9
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 1.2e-194 683.3 420 78.8
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 1.2e-194 683.3 419 77.8
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 2.6e-194 682.2 420 78.3
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 7.5e-194 680.6 420 78.8
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 1.6e-191 672.9 420 77.6
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 2.7e-191 672.2 420 77.1
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 4.5e-191 671.4 420 77.4
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 1.2e-188 663.3 420 76.4
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 2.1e-188 662.5 420 75.5
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 6.1e-188 661.0 420 76.2
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.2e-186 656.8 420 75.2
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.5e-186 656.4 420 75.7
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 2.6e-186 655.6 420 75.5
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 7.5e-186 654.1 420 75.0
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.3e-185 653.3 420 74.8
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 2.8e-185 652.1 420 75.7
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 4.9e-185 651.4 420 75.7
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 8.3e-185 650.6 420 74.3
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 1.1e-184 650.2 420 75.2
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 3.1e-184 648.7 420 74.8
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 3.1e-184 648.7 420 75.0
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 1.6e-183 646.4 420 74.0
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 7.8e-183 644.0 405 76.5
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 1.3e-182 643.3 420 74.8
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.3e-182 643.3 420 74.8
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 2.9e-182 642.1 420 73.3
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 1.5e-181 639.8 420 74.3
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 2.5e-181 639.0 421 74.1
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.5e-181 639.0 420 74.5
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 3.3e-181 638.6 420 74.0
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 1.0e-179 633.6 420 71.9
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 1.8e-179 632.9 421 74.3
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 2.3e-179 632.5 420 74.0
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 3.0e-179 632.1 420 73.6
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 4.0e-179 631.7 420 73.1
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 5.2e-179 631.3 420 73.3
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 2.0e-178 629.4 425 72.7
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 2.0e-178 629.4 420 72.4
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 4.4e-178 628.2 421 73.4
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 4.4e-178 628.2 420 73.1
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 5.7e-178 627.9 420 70.7
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 1.3e-177 626.7 420 72.9
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 3.7e-177 625.2 421 74.1
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 4.9e-177 624.8 420 71.0
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 1.4e-176 623.2 409 72.1
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 1.8e-176 622.9 420 72.1
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 4.6e-175 618.2 419 71.6
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 4.6e-175 618.2 421 72.0
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 3.0e-174 615.5 420 70.7
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 3.9e-174 615.1 420 71.0
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 5.0e-174 614.8 421 71.7
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 1.1e-173 613.6 420 71.4
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 9.5e-173 610.5 420 71.2
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 1.6e-172 609.8 421 71.0
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 1.4e-171 606.7 420 68.3
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 2.3e-171 605.9 408 73.0
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 2.3e-171 605.9 420 70.7
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 3.1e-171 605.5 413 70.7
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 5.2e-171 604.7 420 69.5
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 1.5e-170 603.2 420 69.5
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 2.0e-170 602.8 423 71.9
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 3.4e-170 602.1 420 70.7
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 4.4e-170 601.7 420 70.2
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 2.9e-169 599.0 425 68.5
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 4.9e-169 598.2 420 69.3
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 1.9e-168 596.3 420 70.0
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 2.4e-168 595.9 425 68.0
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 3.2e-168 595.5 420 69.5
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 4.1e-168 595.1 426 69.0
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 5.4e-168 594.7 420 70.0
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 2.7e-167 592.4 423 68.1
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 3.5e-167 592.0 420 70.2
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 8.1e-164 580.9 422 66.6
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 4.0e-163 578.6 420 67.6
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 8.9e-163 577.4 420 67.9
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 1.2e-162 577.0 420 67.9
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 2.9e-161 572.4 421 67.5
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 3.7e-161 572.0 420 66.9
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 3.7e-161 572.0 420 67.1
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 6.4e-161 571.2 420 67.1
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 1.2e-159 567.0 424 66.5
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 6.0e-159 564.7 420 65.5
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 6.0e-159 564.7 421 66.7
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 1.0e-158 563.9 420 65.5
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 1.3e-158 563.5 420 65.5
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 5.1e-158 561.6 420 65.0
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 2.5e-157 559.3 377 71.6
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 9.5e-157 557.4 420 65.5
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 8.9e-155 550.8 420 63.8
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 5.1e-150 535.0 421 65.1
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 1.9e-149 533.1 420 61.0
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 4.3e-149 531.9 421 64.6
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 7.3e-149 531.2 421 64.1
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 2.8e-148 529.3 421 62.2
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 8.1e-148 527.7 422 63.5
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 1.2e-143 513.8 420 58.3
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 5.3e-139 498.4 426 58.5
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 1.9e-136 490.0 421 57.2
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 2.4e-131 473.0 357 68.1
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 2.8e-124 449.5 405 54.6
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 2.6e-122 443.0 425 52.5
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 4.6e-119 432.2 425 52.0
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 7.6e-114 414.8 251 80.1
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 1.0e-113 414.5 325 63.7
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 1.9e-112 410.2 282 70.6
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 3.3e-109 399.4 403 47.6
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 2.8e-108 396.4 422 48.8
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 6.3e-92 342.0 302 59.6
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 7.0e-91 338.6 414 44.0
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 2.9e-89 333.2 374 45.7
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 1.8e-83 313.9 305 51.5
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 5.3e-83 312.4 248 59.7
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 2.1e-71 273.9 317 44.2
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.1e-67 261.5 269 53.5
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 9.5e-64 248.4 134 87.3
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 6.2e-47 192.6 155 63.2
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 8.3e-44 182.2 131 67.2
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.2e-37 161.8 99 76.8
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 6.0e-34 149.4 91 76.9
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 2.9e-28 130.6 74 79.7
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 6.4e-28 129.4 71 81.7
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 2.1e-26 124.4 71 80.3
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 3.0e-25 120.6 71 78.9
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 3.0e-25 120.6 71 78.9
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 1.7e-20 104.8 104 51.0
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 8.4e-20 102.4 102 52.9
SMO111G0157 Selaginella moellendorffii HOM05D019739 ORTHO05D026044 1.7e-12 78.2 430 24.4
Medtr7g104490 Medicago truncatula HOM05D003488 ORTHO05D004214 2.1e-10 71.2 304 24.7
Prupe.7G111200 Prunus persica HOM05D003488 ORTHO05D004214 6.0e-10 69.7 305 23.9
Aa31LG2G3560 Aethionema arabicum HOM05D003488 ORTHO05D004214 8.7e-09 65.9 304 22.7
Glyma.19G194600 Glycine max HOM05D003488 ORTHO05D004214 1.1e-08 65.5 305 24.3
MD14G1022200 Malus domestica HOM05D003488 ORTHO05D004214 1.5e-08 65.1 307 23.1
Lalb_Chr02g0154961 Lupinus albus HOM05D003488 ORTHO05D004214 3.3e-08 63.9 307 21.8
arahy.Tifrunner.gnm1.ann1.0J6PHG Arachis hypogaea HOM05D003488 ORTHO05D004214 4.3e-08 63.5 371 22.6
arahy.Tifrunner.gnm1.ann1.Q9WWUM Arachis hypogaea HOM05D003488 ORTHO05D004214 4.3e-08 63.5 371 22.6
Hma1.2p1_0388F.1_g142070 Hydrangea macrophylla HOM05D001477 ORTHO05D001182 4.3e-08 63.5 243 24.7
Zm00001eb147200 Zea mays HOM05D003488 ORTHO05D004214 9.6e-08 62.4 303 23.4
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 1.3e-07 62.0 240 25.8
Sp5g22120 Schrenkiella parvula HOM05D003488 ORTHO05D004214 1.6e-07 61.6 242 25.2
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 2.8e-07 60.8 251 24.3
TPR.G11390 Trifolium pratense HOM05D003488 ORTHO05D004214 2.8e-07 60.8 326 20.9
FAN17G2978 Fragaria x ananassa HOM05D030415 ORTHO05D006431 3.7e-07 60.5 76 50.0
Thhalv10018615m.g Eutrema salsugineum HOM05D003488 ORTHO05D004214 4.8e-07 60.1 242 25.2
Ah.15g095780 Amaranthus hybridus HOM05D003488 ORTHO05D004214 6.2e-07 59.7 420 22.6
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 6.2e-07 59.7 240 25.8
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 6.2e-07 59.7 240 25.8
Peaxi162Scf00179g00923 Petunia axillaris HOM05D000312 ORTHO05D000221 8.2e-07 59.3 139 29.5
QL01p012332 Quercus lobata HOM05D003488 ORTHO05D004214 8.2e-07 59.3 306 25.2
Nitab4.5_0000027g0360 Nicotiana tabacum HOM05D000312 ORTHO05D000221 1.1e-06 58.9 242 22.3
Haze_15913 Corylus avellana HOM05D001477 ORTHO05D001182 1.4e-06 58.5 210 21.0
EL10Ac7g16924 Beta vulgaris HOM05D003488 ORTHO05D004214 1.8e-06 58.2 341 22.3
Cfa003613 Carpinus fangiana HOM05D001477 ORTHO05D001182 5.3e-06 56.6 207 20.8
Eucgr.E03703 Eucalyptus grandis HOM05D001396 ORTHO05D000493 5.3e-06 56.6 215 27.4
Lj7A357T28 Lonicera japonica HOM05D000051 ORTHO05D000015 9.0e-06 55.8 219 24.7
RcHm_v2.0_Chr5g0028461 Rosa chinensis HOM05D000051 ORTHO05D000015 9.0e-06 55.8 193 24.9


User provided reference genes

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