Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G014750 Populus trichocarpa HOM05D009888 ORTHO05D001895 1.1e-71 273.1 130 100.0
Potri.003G011875 Populus trichocarpa HOM05D009888 ORTHO05D001895 1.3e-64 249.6 130 91.5
Potri.003G013026 Populus trichocarpa HOM05D009888 ORTHO05D001895 9.8e-60 233.4 133 84.2
Potri.003G016733 Populus trichocarpa HOM05D009888 ORTHO05D001895 1.1e-58 229.9 133 83.5
Potri.003G021250 Populus trichocarpa HOM05D009888 ORTHO05D001895 3.1e-58 228.4 132 84.1
Sabra03G0007500 Salix brachista HOM05D009888 ORTHO05D001895 3.1e-58 228.4 134 82.8
Sabra03G0007700 Salix brachista HOM05D009888 ORTHO05D001895 2.7e-57 225.3 132 81.1
Potri.003G013601 Populus trichocarpa HOM05D009888 ORTHO05D001895 9.5e-55 216.9 133 80.5
Sabra03G0006600 Salix brachista HOM05D009888 ORTHO05D001895 1.6e-54 216.1 130 80.8
Sabra03G0007300 Salix brachista HOM05D009888 ORTHO05D001895 3.4e-52 208.4 132 76.5
Sabra03G0007600 Salix brachista HOM05D009888 ORTHO05D001895 9.8e-52 206.8 134 76.1
Sabra03G0007000 Salix brachista HOM05D009888 ORTHO05D001895 1.3e-51 206.5 130 77.7
Sabra03G0006900 Salix brachista HOM05D009888 ORTHO05D001895 4.1e-50 201.4 132 77.3
Sabra03G0007200 Salix brachista HOM05D009888 ORTHO05D001895 1.3e-48 196.4 130 74.6
Manes.10G121100 Manihot esculenta HOM05D009888 ORTHO05D001895 7.5e-36 154.1 131 56.5
Manes.10G125112 Manihot esculenta HOM05D009888 ORTHO05D001895 2.2e-35 152.5 131 55.7
Manes.07G019800 Manihot esculenta HOM05D009888 ORTHO05D001895 4.1e-34 148.3 131 56.5
Manes.07G019700 Manihot esculenta HOM05D009888 ORTHO05D001895 1.2e-30 136.7 122 55.7
Manes.10G121200 Manihot esculenta HOM05D009888 ORTHO05D001895 2.4e-26 122.5 131 50.4
Manes.02G167801 Manihot esculenta HOM05D009888 ORTHO05D001895 9.2e-18 94.0 121 43.0
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 1.6e-17 93.2 125 41.6
Manes.07G020500 Manihot esculenta HOM05D016843 ORTHO05D001895 3.5e-17 92.0 120 40.8
Manes.07G020550 Manihot esculenta HOM05D016843 ORTHO05D001895 3.0e-16 89.0 120 40.0
Manes.07G021000 Manihot esculenta HOM05D016843 ORTHO05D001895 3.0e-16 89.0 123 39.0
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.9e-16 88.6 132 40.2
Manes.07G020700 Manihot esculenta HOM05D016843 ORTHO05D001895 7.3e-15 84.3 120 38.3
Thecc.02G027800 Theobroma cacao HOM05D002599 ORTHO05D001895 2.1e-14 82.8 123 39.8
Thecc.02G091100 Theobroma cacao HOM05D002599 ORTHO05D001895 4.8e-14 81.6 128 40.6
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.1e-14 80.9 114 37.7
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.1e-14 80.9 114 37.7
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 8.1e-14 80.9 114 37.7
Potri.004G219800 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.4e-13 79.3 117 37.6
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 2.4e-13 79.3 115 37.4
Gohir.A13G036650 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.1e-13 79.0 136 36.8
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.0e-13 78.6 126 36.5
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 6.9e-13 77.8 117 38.5
Sabra01G0167100 Salix brachista HOM05D008886 ORTHO05D001895 9.0e-13 77.4 121 39.7
Potri.004G219900 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.0e-12 76.3 117 38.5
Potri.004G221300 Populus trichocarpa HOM05D008886 ORTHO05D001895 2.0e-12 76.3 124 35.5
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.4e-12 75.5 126 35.7
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 4.4e-12 75.1 119 39.5
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.4e-12 75.1 126 35.7
Potri.004G219700 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.8e-12 74.7 123 36.6
Sabra01G0167000 Salix brachista HOM05D008353 ORTHO05D001895 8.4e-11 70.9 87 44.8
Manes.10G124912 Manihot esculenta HOM05D002599 ORTHO05D001895 1.9e-10 69.7 116 37.9
Gohir.A01G056400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.2e-10 68.9 115 33.9
Potri.004G219450 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.2e-10 68.6 120 33.3
Sabra01G0167200 Salix brachista HOM05D008886 ORTHO05D001895 5.4e-10 68.2 123 34.1
Sabra15G0012100 Salix brachista HOM05D002599 ORTHO05D001895 5.4e-10 68.2 106 38.7
Thecc.07G108500 Theobroma cacao HOM05D009888 ORTHO05D001895 7.1e-10 67.8 114 33.3
Thecc.10G017500 Theobroma cacao HOM05D002599 ORTHO05D001895 7.1e-10 67.8 115 32.2
Atru.chr4.3203 Acer truncatum HOM05D002599 ORTHO05D001895 1.6e-09 66.6 93 36.6
Atru.chr4.3201 Acer truncatum HOM05D002599 ORTHO05D001895 2.1e-09 66.2 88 35.2
Atru.chr4.3202 Acer truncatum HOM05D002599 ORTHO05D001895 2.1e-09 66.2 88 35.2
Sabra01G0167400 Salix brachista HOM05D008886 ORTHO05D001895 2.7e-09 65.9 103 38.8
COL.COLO4_17587 Corchorus olitorius HOM05D009888 ORTHO05D001895 3.5e-09 65.5 104 34.6
Potri.011G005300 Populus trichocarpa HOM05D008886 ORTHO05D001895 3.5e-09 65.5 90 35.6
Sabra16G0269300 Salix brachista HOM05D008886 ORTHO05D001895 3.5e-09 65.5 95 40.0
Potri.004G011000 Populus trichocarpa HOM05D008886 ORTHO05D001895 4.6e-09 65.1 91 38.5
Sabra01G0164100 Salix brachista HOM05D002599 ORTHO05D001895 1.0e-08 63.9 117 34.2
Sabra16G0267500 Salix brachista HOM05D008886 ORTHO05D001895 1.0e-08 63.9 94 37.2
Potri.004G220100 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-08 63.5 103 32.0
Potri.011G006050 Populus trichocarpa HOM05D008886 ORTHO05D001895 1.7e-08 63.2 105 31.4
Thecc.01G060200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.7e-08 63.2 119 35.3
Thecc.04G012700 Theobroma cacao HOM05D002599 ORTHO05D001895 1.7e-08 63.2 91 37.4
Sabra03G0009900 Salix brachista HOM05D002599 ORTHO05D001895 3.0e-08 62.4 119 34.5
Gohir.A01G056300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.9e-08 62.0 115 31.3
Gohir.D01G042900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.9e-08 62.0 115 32.2
Gorai.002G061900 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.9e-08 62.0 115 32.2
Potri.011G005601 Populus trichocarpa HOM05D008886 ORTHO05D001895 3.9e-08 62.0 90 36.7
Sabra03G0009000 Salix brachista HOM05D002599 ORTHO05D001895 3.9e-08 62.0 119 34.5
Sabra03G0009300 Salix brachista HOM05D002599 ORTHO05D001895 3.9e-08 62.0 119 34.5
Sabra03G0009600 Salix brachista HOM05D002599 ORTHO05D001895 3.9e-08 62.0 119 34.5
Sabra01G0166800 Salix brachista HOM05D002599 ORTHO05D001895 5.1e-08 61.6 112 31.2
Thecc.07G108300 Theobroma cacao HOM05D009888 ORTHO05D001895 6.6e-08 61.2 115 30.4
Duzib147G0900 Durio zibethinus HOM05D002599 ORTHO05D001895 2.5e-07 59.3 86 39.5
Thecc.07G108200 Theobroma cacao HOM05D009888 ORTHO05D001895 2.5e-07 59.3 114 30.7
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 7.3e-07 57.8 118 33.9
Prupe.1G574400 Prunus persica HOM05D002599 ORTHO05D001895 7.3e-07 57.8 117 30.8
Gohir.A01G182500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.6e-06 55.5 107 33.6
Gorai.002G215500 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.8e-06 55.1 110 32.7
Sabra11G0004000 Salix brachista HOM05D008886 ORTHO05D001895 4.8e-06 55.1 107 31.8
Sabra11G0004600 Salix brachista HOM05D008886 ORTHO05D001895 4.8e-06 55.1 107 31.8
Manes.07G021600 Manihot esculenta HOM05D002599 ORTHO05D001895 8.1e-06 54.3 114 31.6
Sabra11G0004100 Salix brachista HOM05D008886 ORTHO05D001895 8.1e-06 54.3 90 34.4


User provided reference genes

Program Settings