Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G010800 Populus trichocarpa HOM05D016764 ORTHO05D001895 5.4e-59 230.7 111 100.0
Potri.003G011000 Populus trichocarpa HOM05D016764 ORTHO05D001895 6.0e-58 227.3 111 98.2
Sabra03G0006300 Salix brachista HOM05D016764 ORTHO05D001895 2.2e-44 182.2 102 83.3
Sabra03G0006200 Salix brachista HOM05D016764 ORTHO05D001895 5.6e-40 167.5 91 85.7
Potri.004G219600 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.3e-38 161.0 105 70.5
Potri.004G220300 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-36 156.4 105 69.5
Sabra01G0166700 Salix brachista HOM05D016764 ORTHO05D001895 4.8e-31 137.9 104 64.4
Potri.004G220000 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.2e-31 137.5 103 61.2
Sabra01G0164300 Salix brachista HOM05D016764 ORTHO05D001895 1.8e-30 136.0 104 61.5
Potri.003G025350 Populus trichocarpa HOM05D016764 ORTHO05D001895 2.1e-23 112.5 88 68.2
Manes.10G124500 Manihot esculenta HOM05D002599 ORTHO05D001895 4.5e-21 104.8 108 50.9
Manes.10G124600 Manihot esculenta HOM05D002599 ORTHO05D001895 1.0e-20 103.6 102 52.0
Manes.10G126325 Manihot esculenta HOM05D002599 ORTHO05D001895 1.9e-19 99.4 105 47.6
Potri.014G068000 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.9e-14 80.9 102 43.1
Thecc.02G090900 Theobroma cacao HOM05D002599 ORTHO05D001895 3.4e-13 78.6 107 38.3
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 4.5e-13 78.2 104 42.3
Manes.07G021750 Manihot esculenta HOM05D016764 ORTHO05D001895 7.6e-13 77.4 66 51.5
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 3.8e-12 75.1 102 35.3
Thecc.02G091000 Theobroma cacao HOM05D002599 ORTHO05D001895 6.5e-12 74.3 106 39.6
Thecc.10G017400 Theobroma cacao HOM05D002599 ORTHO05D001895 1.1e-11 73.6 104 34.6
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.5e-11 71.2 102 34.3
Potri.015G015800 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.5e-11 71.2 80 42.5
Gohir.A12G027233 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.2e-11 70.9 104 36.5
Gohir.A12G027266 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.2e-11 70.9 104 36.5
Gorai.008G027000 Gossypium raimondii HOM05D002599 ORTHO05D001895 7.2e-11 70.9 90 38.9
Gohir.D12G026700 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.6e-10 69.7 107 33.6
Thecc.10G017800 Theobroma cacao HOM05D002599 ORTHO05D001895 1.6e-10 69.7 105 34.3
Sabra12G0018200 Salix brachista HOM05D002599 ORTHO05D001895 2.1e-10 69.3 97 33.0
Gohir.A12G027200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.7e-10 68.9 106 34.9
Potri.015G015650 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.7e-10 68.9 102 34.3
Gohir.D12G026733 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.6e-10 68.6 104 35.6
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.6e-10 68.6 106 37.7
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.6e-10 68.2 102 34.3
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 7.9e-10 67.4 102 39.2
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 7.9e-10 67.4 106 35.8
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.0e-09 67.0 106 37.7
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.0e-09 67.0 106 37.7
Potri.015G015501 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.0e-09 67.0 103 34.0
Thecc.10G017100 Theobroma cacao HOM05D002599 ORTHO05D001895 1.0e-09 67.0 92 34.8
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.4e-09 66.6 102 35.3
Potri.015G014850 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.4e-09 66.6 103 33.0
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.8e-09 66.2 110 38.2
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.8e-09 66.2 106 35.8
Potri.004G218101 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.8e-09 66.2 101 37.6
Thecc.01G060200 Theobroma cacao HOM05D002599 ORTHO05D001895 2.3e-09 65.9 107 38.3
Duzib052G0486 Durio zibethinus HOM05D002599 ORTHO05D001895 3.0e-09 65.5 108 32.4
Gohir.D04G176484 Gossypium hirsutum HOM05D002599 ORTHO05D029872 3.0e-09 65.5 110 33.6
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 3.0e-09 65.5 104 36.5
Potri.012G013167 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.9e-09 65.1 109 34.9
Thecc.10G017300 Theobroma cacao HOM05D009631 ORTHO05D011824 3.9e-09 65.1 105 33.3
TWI14G1236 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 3.9e-09 65.1 106 38.7
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 5.1e-09 64.7 102 35.3
Atru.chr6.704 Acer truncatum HOM05D002599 ORTHO05D001895 1.1e-08 63.5 81 39.5
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 1.1e-08 63.5 106 37.7
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.9e-08 62.8 90 37.8
Potri.015G015275 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.9e-08 62.8 103 33.0
Gohir.A02G159400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.3e-08 62.0 106 35.8
Ciclev10024116m.g Citrus clementina HOM05D002599 ORTHO05D001895 4.3e-08 61.6 104 33.7
Duzib187G0682 Durio zibethinus HOM05D002599 ORTHO05D001895 4.3e-08 61.6 82 35.4
Gorai.012G168700 Gossypium raimondii HOM05D002599 ORTHO05D029872 4.3e-08 61.6 109 32.1
Potri.015G126301 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.7e-08 61.2 104 31.7
Sabra15G0012000 Salix brachista HOM05D002599 ORTHO05D001895 7.4e-08 60.8 101 32.7
Duzib052G1144 Durio zibethinus HOM05D002599 ORTHO05D001895 9.7e-08 60.5 105 32.4
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.7e-08 60.5 106 34.0
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.7e-07 59.7 108 38.0
Sabra01G0165000 Salix brachista HOM05D002599 ORTHO05D001895 2.2e-07 59.3 102 33.3
Gorai.012G169000 Gossypium raimondii HOM05D002599 ORTHO05D029872 2.8e-07 58.9 108 31.5
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 8.2e-07 57.4 87 40.2
Potri.004G219450 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.2e-07 57.4 108 34.3
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.1e-06 57.0 88 35.2
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-06 57.0 87 40.2
Sabra01G0167100 Salix brachista HOM05D008886 ORTHO05D001895 1.4e-06 56.6 104 32.7
Sabra07G0097000 Salix brachista HOM05D000527 ORTHO05D017379 1.8e-06 56.2 74 37.8
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 1.8e-06 56.2 107 34.6
Thecc.05G107200 Theobroma cacao HOM05D002599 ORTHO05D025152 2.4e-06 55.8 118 36.4
Sabra15G0012700 Salix brachista HOM05D002599 ORTHO05D001895 3.1e-06 55.5 86 32.6
Manes.10G122700 Manihot esculenta HOM05D002599 ORTHO05D001895 4.1e-06 55.1 103 35.0
Potri.011G005200 Populus trichocarpa HOM05D008886 ORTHO05D001895 4.1e-06 55.1 93 32.3
Thecc.02G018800 Theobroma cacao HOM05D002599 ORTHO05D001895 6.9e-06 54.3 106 33.0
Thecc.02G091300 Theobroma cacao HOM05D002599 ORTHO05D001895 6.9e-06 54.3 92 32.6


User provided reference genes

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