Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 0.0e+00 1386.3 687 100.0
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 5.9e-265 917.5 642 70.6
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 3.5e-257 891.7 666 66.4
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 1.5e-247 859.8 698 62.8
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 1.2e-246 856.7 681 63.1
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 1.2e-246 856.7 629 67.1
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 1.4e-245 853.2 679 62.3
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 6.8e-245 850.9 679 63.9
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 3.4e-244 848.6 616 66.7
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 9.9e-244 847.0 674 62.5
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 8.3e-243 844.0 676 63.3
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 8.3e-243 844.0 628 66.1
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 4.1e-242 841.6 677 62.5
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 4.1e-242 841.6 605 66.8
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 1.2e-241 840.1 628 65.4
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 6.0e-241 837.8 686 62.2
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 3.0e-240 835.5 646 65.0
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 2.5e-239 832.4 681 61.7
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 4.3e-239 831.6 630 64.4
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 4.7e-238 828.2 605 66.1
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 2.4e-237 825.9 590 67.3
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 9.9e-236 820.5 596 67.4
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 1.1e-234 817.0 642 63.9
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 4.2e-234 815.1 673 62.0
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 6.6e-232 807.7 596 66.4
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 1.5e-231 806.6 641 64.1
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 9.0e-229 797.3 610 63.1
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 2.0e-228 796.2 643 63.0
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 4.9e-227 791.6 577 65.9
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 1.9e-226 789.6 640 63.0
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 7.8e-225 784.3 671 57.8
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 3.9e-224 781.9 670 58.1
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 3.1e-221 772.3 597 62.8
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 2.0e-220 769.6 707 55.3
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 2.6e-220 769.2 630 60.2
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 1.1e-218 763.8 693 57.0
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 9.3e-218 760.8 675 57.8
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 1.2e-217 760.4 698 57.7
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 1.2e-217 760.4 591 62.1
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 1.2e-217 760.4 681 59.2
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 2.1e-217 759.6 549 67.2
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 4.6e-217 758.4 655 58.8
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 4.6e-217 758.4 680 57.4
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 4.6e-217 758.4 679 59.6
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 6.0e-217 758.1 679 57.9
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 7.9e-217 757.7 598 61.5
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 3.9e-216 755.4 680 56.2
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 3.9e-216 755.4 646 58.0
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 3.3e-215 752.3 641 58.5
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 3.3e-215 752.3 694 56.5
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 4.3e-215 751.9 655 57.6
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 3.7e-214 748.8 596 60.6
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 6.2e-214 748.0 703 55.0
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 6.2e-214 748.0 665 58.2
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 8.1e-214 747.7 595 60.7
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 4.0e-213 745.3 643 57.2
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 2.6e-212 742.7 640 57.7
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 5.8e-212 741.5 689 56.0
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 8.4e-211 737.6 572 62.2
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 1.0e-208 730.7 668 58.4
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 1.8e-208 729.9 689 55.9
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 8.7e-208 727.6 620 60.2
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 4.3e-207 725.3 699 55.1
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 9.6e-207 724.2 619 60.6
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 1.5e-204 716.8 760 50.7
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 5.0e-203 711.8 688 53.5
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 2.3e-200 703.0 647 56.6
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 3.0e-200 702.6 687 53.4
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 4.3e-199 698.7 619 55.4
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 5.7e-199 698.4 575 60.5
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 1.1e-197 694.1 596 59.6
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 2.6e-196 689.5 686 54.1
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 8.5e-195 684.5 670 52.7
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 3.0e-192 676.0 605 55.2
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 8.8e-192 674.5 530 62.1
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 3.3e-191 672.5 505 63.8
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 4.3e-191 672.2 974 42.5
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 5.3e-189 665.2 611 54.5
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 5.9e-188 661.8 599 57.4
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 2.9e-187 659.4 744 50.3
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 1.4e-184 650.6 664 50.6
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 6.1e-177 625.2 679 51.3
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 8.0e-177 624.8 695 48.6
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 9.7e-175 617.8 602 54.3
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 3.5e-172 609.4 648 49.7
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 2.9e-171 606.3 697 48.2
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 1.9e-170 603.6 676 47.3
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 7.2e-170 601.7 643 49.5
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 1.8e-165 587.0 670 49.7
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 1.2e-159 567.8 582 49.7
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 5.7e-159 565.5 587 47.0
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 3.1e-157 559.7 593 50.6
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 1.7e-155 553.9 586 48.0
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 6.6e-155 552.0 500 59.0
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 3.4e-151 539.7 636 44.3
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 7.8e-148 528.5 407 63.9
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 3.6e-145 519.6 378 67.5
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 3.2e-141 506.5 399 63.2
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 3.0e-139 500.0 450 59.1
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 3.0e-139 500.0 651 41.2
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.1e-130 471.5 500 49.0
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 8.1e-121 438.7 603 44.3
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 2.8e-113 413.7 328 61.0
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 3.1e-112 410.2 293 63.8
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 1.2e-111 408.3 353 59.2
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 1.6e-105 387.9 313 61.7
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 3.6e-105 386.7 329 59.0
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 6.2e-105 386.0 327 60.6
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.7e-102 377.9 481 48.0
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 1.3e-99 368.2 499 41.5
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 3.7e-97 360.1 446 42.8
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 4.0e-96 356.7 487 40.9
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 9.3e-93 345.5 524 36.6
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 3.0e-91 340.5 355 51.0
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 3.7e-89 333.6 396 48.5
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 1.2e-84 318.5 303 56.8
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 3.8e-78 297.0 336 50.0
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 1.1e-74 285.4 699 30.9
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 6.9e-72 276.2 565 31.3
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 5.9e-63 246.5 153 76.5
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 8.5e-62 242.7 353 44.2
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 5.5e-61 240.0 215 55.3
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 2.1e-60 238.0 265 50.6
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 1.1e-58 232.3 201 62.2
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 2.0e-58 231.5 156 69.2
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 1.8e-56 224.9 287 42.5
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 7.7e-55 219.5 147 67.3
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 1.7e-54 218.4 302 46.7
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 6.5e-54 216.5 149 65.1
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 8.0e-52 209.5 255 42.7
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 2.8e-49 201.1 241 48.1
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 4.8e-49 200.3 194 51.5
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 8.3e-49 199.5 286 43.7
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 1.8e-48 198.4 300 42.0
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 7.7e-47 193.0 134 64.9
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 1.4e-40 172.2 329 37.1
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 2.9e-38 164.5 198 44.4
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 1.8e-35 155.2 116 63.8
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.4e-32 145.6 107 62.6
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 3.5e-31 141.0 84 75.0
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 3.0e-30 137.9 204 41.2
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 3.4e-26 124.4 83 67.5
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 4.4e-26 124.0 101 56.4
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.2e-25 121.7 117 54.7
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 2.9e-25 121.3 192 37.5
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 3.7e-25 120.9 70 80.0
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.6e-23 115.5 85 67.1
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 1.7e-22 112.1 105 57.1
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 3.0e-22 111.3 101 59.4
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 3.9e-22 110.9 70 72.9
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 6.0e-15 87.0 91 53.8
Aqoxy1G02674 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 4.0e-11 74.3 96 43.8
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 2.6e-10 71.6 84 50.0


User provided reference genes

Program Settings