Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 1.0e-111 406.8 202 100.0
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 1.9e-86 322.8 200 78.0
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 1.2e-85 320.1 198 77.3
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 1.6e-85 319.7 194 78.4
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 1.3e-82 310.1 193 77.2
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 2.8e-82 308.9 194 77.3
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 3.7e-82 308.5 196 74.5
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 3.7e-82 308.5 196 74.5
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 6.3e-82 307.8 188 77.1
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 6.3e-82 307.8 190 76.8
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 1.1e-81 307.0 199 74.9
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 1.4e-81 306.6 196 74.5
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 3.1e-81 305.4 192 78.1
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 5.4e-81 304.7 193 76.7
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 9.1e-81 303.9 192 77.6
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 2.0e-80 302.8 199 74.4
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 2.7e-80 302.4 196 70.4
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 1.0e-79 300.4 198 72.7
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 5.0e-79 298.1 197 74.1
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 5.0e-79 298.1 195 72.3
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 6.6e-79 297.7 197 73.1
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 1.1e-78 297.0 198 72.7
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 1.1e-78 297.0 195 71.8
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 1.9e-78 296.2 191 72.3
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 3.3e-78 295.4 195 73.3
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 3.3e-78 295.4 198 71.2
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 5.5e-78 294.7 194 73.2
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 5.5e-78 294.7 193 74.6
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 7.2e-78 294.3 193 74.6
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 9.5e-78 293.9 190 73.7
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 9.5e-78 293.9 191 72.8
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 2.1e-77 292.7 194 73.2
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 2.1e-77 292.7 199 69.8
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 2.8e-77 292.4 198 73.2
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 4.7e-77 291.6 190 72.6
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 1.0e-76 290.4 194 73.2
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 1.4e-76 290.0 193 72.5
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 1.4e-76 290.0 186 75.3
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 1.8e-76 289.7 189 72.5
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 3.0e-76 288.9 193 73.6
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 5.2e-76 288.1 198 70.7
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 6.8e-76 287.7 193 71.5
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 2.0e-75 286.2 191 71.7
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 3.4e-75 285.4 194 70.6
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 3.4e-75 285.4 195 70.3
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 4.4e-75 285.0 189 70.9
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 7.5e-75 284.3 195 72.8
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 9.8e-75 283.9 195 71.8
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 1.3e-74 283.5 198 69.2
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 1.7e-74 283.1 195 71.8
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 1.7e-74 283.1 194 71.1
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 6.3e-74 281.2 198 71.7
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 8.3e-74 280.8 195 71.8
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 1.4e-73 280.0 195 71.8
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 1.4e-73 280.0 195 71.8
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 2.4e-73 279.3 181 74.0
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 1.6e-72 276.6 190 68.4
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 2.7e-72 275.8 178 73.6
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 3.5e-72 275.4 188 68.6
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 1.0e-71 273.9 198 67.7
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 2.3e-71 272.7 204 64.7
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 3.9e-71 271.9 191 70.2
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 6.6e-71 271.2 188 71.8
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 8.6e-71 270.8 197 67.0
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 8.6e-71 270.8 183 72.7
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 1.5e-70 270.0 164 76.8
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 3.3e-70 268.9 195 66.2
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 3.3e-70 268.9 194 67.0
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 5.6e-70 268.1 164 76.2
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 9.5e-70 267.3 188 69.7
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 1.2e-69 266.9 180 69.4
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 4.7e-69 265.0 195 64.6
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 6.1e-69 264.6 175 74.3
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 8.0e-69 264.2 188 68.1
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 1.0e-68 263.8 189 68.3
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 1.4e-68 263.5 194 69.6
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 1.4e-68 263.5 190 68.4
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 1.4e-68 263.5 203 66.5
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 8.9e-68 260.8 191 67.0
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 2.0e-67 259.6 199 64.3
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 7.5e-67 257.7 198 63.1
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 5.4e-65 251.5 186 65.1
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 6.0e-64 248.1 170 70.0
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 3.6e-61 238.8 187 63.1
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 1.3e-58 230.3 173 63.6
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.7e-58 229.9 188 58.5
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 1.6e-56 223.4 192 58.3
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 6.0e-56 221.5 191 57.1
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 6.0e-56 221.5 196 57.7
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 6.6e-55 218.0 147 70.1
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 1.2e-53 213.8 202 55.4
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 3.1e-52 209.1 150 68.0
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 1.3e-50 203.8 187 51.9
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 3.2e-49 199.1 193 53.4
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 1.2e-43 180.6 195 47.7
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 4.3e-38 162.2 111 65.8
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 2.4e-36 156.4 92 81.5
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 2.7e-32 142.9 96 69.8
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 7.8e-32 141.4 82 82.9
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 8.7e-31 137.9 77 84.4
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 1.5e-27 127.1 81 75.3
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 5.6e-22 108.6 160 44.4
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 2.8e-21 106.3 90 61.1
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 3.7e-21 105.9 82 65.9
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 3.7e-21 105.9 82 65.9
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 8.1e-21 104.8 91 58.2
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 8.4e-18 94.7 78 62.8
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 7.1e-09 65.1 49 57.1
Cfa021425 Carpinus fangiana HOM05D006499 ORTHO05D007874 9.3e-09 64.7 183 26.8
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 7.9e-08 61.6 171 28.7
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 1.0e-07 61.2 173 26.0
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.3e-07 60.8 147 29.3
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.8e-07 60.5 158 27.8
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 2.3e-07 60.1 181 27.6
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 2.3e-07 60.1 188 25.5
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 3.9e-07 59.3 178 28.7
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 8.7e-07 58.2 169 29.6
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 1.1e-06 57.8 176 29.0
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 1.5e-06 57.4 149 28.9
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 3.3e-06 56.2 161 29.8
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 5.7e-06 55.5 176 31.8
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 5.7e-06 55.5 163 28.8


User provided reference genes

Program Settings