Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G000900 Populus trichocarpa HOM05D006009 ORTHO05D007389 0.0e+00 1273.1 724 100.0
Sabra03G0000300 Salix brachista HOM05D006009 ORTHO05D007389 0.0e+00 1174.1 724 90.3
Potri.004G228900 Populus trichocarpa HOM05D006009 ORTHO05D007389 1.6e-281 972.6 729 80.5
QL02p103325 Quercus lobata HOM05D006009 ORTHO05D007389 8.1e-281 970.3 730 74.5
Cfa004445 Carpinus fangiana HOM05D006009 ORTHO05D007389 1.3e-275 953.0 728 73.5
CiPaw.05G001600 Carya illinoinensis HOM05D006009 ORTHO05D007389 6.2e-273 944.1 729 73.0
Duzib160G0440 Durio zibethinus HOM05D006009 ORTHO05D007389 6.2e-273 944.1 732 72.5
Thecc.06G017900 Theobroma cacao HOM05D006009 ORTHO05D007389 3.1e-272 941.8 731 72.1
Atru.chr6.240 Acer truncatum HOM05D006009 ORTHO05D007389 1.9e-269 932.6 731 72.1
Manes.10G106700 Manihot esculenta HOM05D006009 ORTHO05D007389 1.5e-266 922.9 731 72.6
Haze_09985 Corylus avellana HOM05D006009 ORTHO05D007389 3.3e-266 921.8 815 65.6
Dinv29632 Davidia involucrata HOM05D006009 ORTHO05D007389 3.1e-264 915.2 727 71.4
RcHm_v2.0_Chr7g0219751 Rosa chinensis HOM05D006009 ORTHO05D007389 4.6e-260 901.4 732 70.9
CSS0016468 Camellia sinensis var. sinensis HOM05D006009 ORTHO05D007389 1.0e-259 900.2 727 69.5
COL.COLO4_31132 Corchorus olitorius HOM05D006009 ORTHO05D007389 1.3e-257 893.3 701 70.8
Ciclev10000419m.g Citrus clementina HOM05D006009 ORTHO05D007389 6.9e-256 887.5 731 69.4
Gohir.D06G150100 Gossypium hirsutum HOM05D006009 ORTHO05D007389 1.5e-255 886.3 732 69.4
FvH4_5g27851 Fragaria vesca HOM05D006009 ORTHO05D007389 7.7e-255 884.0 732 69.7
TWI59G1011 Tripterygium wilfordii HOM05D006009 ORTHO05D007389 3.8e-254 881.7 694 70.3
MD08G1248100 Malus domestica HOM05D006009 ORTHO05D007389 7.2e-253 877.5 732 69.1
Actinidia00150 Actinidia chinensis HOM05D006009 ORTHO05D007389 2.1e-252 875.9 727 67.7
Rhsim11G0117900 Rhododendron simsii HOM05D006009 ORTHO05D007389 3.3e-250 868.6 756 67.3
Gorai.010G175200 Gossypium raimondii HOM05D006009 ORTHO05D007389 4.4e-250 868.2 733 68.8
PGR142G3497 Punica granatum HOM05D006009 ORTHO05D007389 1.7e-249 866.3 731 67.0
MELO3C022930.2 Cucumis melo HOM05D006009 ORTHO05D007389 8.2e-249 864.0 734 67.4
CsaV3_5G037180 Cucumis sativus L. HOM05D006009 ORTHO05D007389 2.4e-248 862.4 734 67.2
MD15G1442900 Malus domestica HOM05D006009 ORTHO05D007389 7.7e-247 857.4 729 67.6
arahy.Tifrunner.gnm1.ann1.WHZ4K1 Arachis hypogaea HOM05D006009 ORTHO05D007389 5.0e-246 854.7 725 66.6
Ca_13530_v3 Cicer arietinum L. HOM05D006009 ORTHO05D007389 5.5e-245 851.3 727 66.3
Solyc01g103040.4 Solanum lycopersicum HOM05D006009 ORTHO05D007389 9.4e-245 850.5 730 66.4
arahy.Tifrunner.gnm1.ann1.AUD1A6 Arachis hypogaea HOM05D006009 ORTHO05D007389 1.2e-244 850.1 725 66.3
Nitab4.5_0002261g0040 Nicotiana tabacum HOM05D006009 ORTHO05D007389 1.6e-244 849.7 734 66.5
Prupe.1G585300 Prunus persica HOM05D006009 ORTHO05D007389 4.7e-244 848.2 671 72.3
ClCG11G000290 Citrullus lanatus HOM05D006009 ORTHO05D007389 5.2e-243 844.7 734 66.5
Hma1.2p1_0052F.1_g030000 Hydrangea macrophylla HOM05D006009 ORTHO05D007389 4.8e-241 838.2 708 67.9
Nitab4.5_0005110g0010 Nicotiana tabacum HOM05D006009 ORTHO05D007389 8.2e-241 837.4 752 64.9
Sopen01g045450 Solanum pennellii HOM05D006009 ORTHO05D007389 3.1e-240 835.5 730 66.6
Glyma.17G001700 Glycine max HOM05D006009 ORTHO05D007389 1.6e-239 833.2 727 66.3
TPR.G5949 Trifolium pratense HOM05D006009 ORTHO05D007389 2.2e-238 829.3 728 65.8
Psat4g001000 Pisum sativum HOM05D006009 ORTHO05D007389 8.5e-238 827.4 727 64.9
Sp6g11340 Schrenkiella parvula HOM05D006009 ORTHO05D007389 1.5e-237 826.6 729 63.9
THA.LOC104806651 Tarenaya hassleriana HOM05D006009 ORTHO05D007389 4.7e-236 821.6 736 64.1
Eucgr.I02796 Eucalyptus grandis HOM05D006009 ORTHO05D007389 5.2e-235 818.1 732 63.7
AL8G23820 Arabidopsis lyrata HOM05D006009 ORTHO05D007389 3.4e-234 815.5 731 63.5
Thhalv10012797m.g Eutrema salsugineum HOM05D006009 ORTHO05D007389 1.3e-233 813.5 729 63.1
Peaxi162Scf00011g01924 Petunia axillaris HOM05D006009 ORTHO05D007389 1.3e-233 813.5 734 64.0
TAR628G0644 Trochodendron aralioides HOM05D006009 ORTHO05D007389 1.3e-233 813.5 729 66.1
CARHR258850 Cardamine hirsuta HOM05D006009 ORTHO05D007389 2.8e-233 812.4 730 63.3
SGA_v2.0_scaffold131G34411 Striga asiatica HOM05D006009 ORTHO05D007389 3.7e-233 812.0 737 62.8
Lalb_Chr12g0195841 Lupinus albus HOM05D006009 ORTHO05D007389 6.3e-233 811.2 729 63.9
BcaB08g35360 Brassica carinata HOM05D006009 ORTHO05D007389 8.3e-233 810.8 729 63.6
Lsat_1_v5_gn_5_104280 Lactuca sativa HOM05D006009 ORTHO05D007389 1.1e-232 810.4 728 64.3
AT5G49880 Arabidopsis thaliana HOM05D006009 ORTHO05D007389 2.0e-231 806.2 731 63.2
Sc03g0005770 Simmondsia chinensis HOM05D006009 ORTHO05D007389 5.9e-231 804.7 730 62.9
Medtr4g134640 Medicago truncatula HOM05D006009 ORTHO05D007389 7.7e-231 804.3 727 63.7
Lj4g0014586 Lotus japonicus HOM05D006009 ORTHO05D007389 1.7e-230 803.1 733 63.8
BraSC37t46134Z Brassica rapa HOM05D006009 ORTHO05D007389 5.5e-229 798.1 731 63.3
Phvul.003G076200 Phaseolus vulgaris HOM05D006009 ORTHO05D007389 2.1e-228 796.2 701 65.3
Carub.0008s0974 Capsella rubella HOM05D006009 ORTHO05D007389 3.6e-228 795.4 730 62.3
Cc02_g23590 Coffea canephora HOM05D006009 ORTHO05D007389 1.4e-227 793.5 733 61.7
Glyma.07G272700 Glycine max HOM05D006009 ORTHO05D007389 1.8e-227 793.1 697 66.9
HanXRQChr10g0301411 Helianthus annuus HOM05D006009 ORTHO05D007389 8.8e-227 790.8 727 63.1
FAN08G0569 Fragaria x ananassa HOM05D006009 ORTHO05D007389 4.4e-226 788.5 803 61.1
vmacro01680 Vaccinium macrocarpon HOM05D006009 ORTHO05D007389 1.7e-225 786.6 816 59.3
A10p08680 Brassica napus HOM05D006009 ORTHO05D007389 4.8e-225 785.0 731 62.5
Migut.B00722 Erythranthe guttata HOM05D006009 ORTHO05D007389 1.1e-224 783.9 733 61.4
ECA234G2369 Erigeron canadensis HOM05D006009 ORTHO05D007389 5.4e-224 781.6 721 62.4
BcaC04g20834 Brassica carinata HOM05D006009 ORTHO05D007389 1.9e-221 773.1 729 61.7
MSTRG.16468 Avicennia marina HOM05D006009 ORTHO05D007389 2.1e-220 769.6 699 62.8
PSO017G1873 Papaver somniferum HOM05D006009 ORTHO05D007389 4.7e-220 768.5 724 61.9
C09p38660 Brassica napus HOM05D006009 ORTHO05D007389 6.8e-219 764.6 731 61.6
BolC9t56722H Brassica oleracea HOM05D006009 ORTHO05D007389 6.8e-219 764.6 731 61.6
Gohir.A06G144400 Gossypium hirsutum HOM05D006009 ORTHO05D007389 7.8e-215 751.1 732 63.0
DCAR_001725 Daucus carota HOM05D006009 ORTHO05D007389 2.3e-214 749.6 698 65.0
Aqoxy6G00035 Aquilegia oxysepala HOM05D006009 ORTHO05D007389 3.9e-214 748.8 740 59.5
Aa31sc62G20 Aethionema arabicum HOM05D006009 ORTHO05D007389 7.3e-213 744.6 728 62.4
MBI03_g05191_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 4.7e-212 741.9 731 59.8
FAN04G2183 Fragaria x ananassa HOM05D006009 ORTHO05D007389 5.8e-210 734.9 662 66.3
Lj5C283T7 Lonicera japonica HOM05D006009 ORTHO05D007389 5.6e-205 718.4 726 60.3
AUR62042641 Chenopodium quinoa HOM05D006009 ORTHO05D007389 9.5e-205 717.6 751 58.5
Nn5g27199 Nelumbo nucifera HOM05D006009 ORTHO05D007389 1.4e-203 713.8 730 60.3
Ah.03g136790 Amaranthus hybridus HOM05D006009 ORTHO05D007389 1.9e-200 703.4 732 57.2
AUR62032470 Chenopodium quinoa HOM05D006009 ORTHO05D007389 1.0e-198 697.6 731 60.3
PSO170G2218 Papaver somniferum HOM05D006009 ORTHO05D007389 8.1e-196 688.0 696 59.1
unitig_8.g4550 Utricularia gibba HOM05D006009 ORTHO05D007389 2.2e-193 679.9 672 58.8
EL10Ac6g13997 Beta vulgaris HOM05D006009 ORTHO05D007389 2.0e-186 656.8 783 53.0
Oeu043610.2 Olea europaea HOM05D006009 ORTHO05D007389 5.1e-182 642.1 673 57.7
ATR1089G153 Amborella trichopoda HOM05D006009 ORTHO05D007389 3.1e-179 632.9 732 52.7
CANSAT01G0444 Cannabis sativa HOM05D006009 ORTHO05D007389 2.0e-170 603.6 599 61.9
Os01g0877300 Oryza sativa ssp. japonica HOM05D006009 ORTHO05D007389 3.4e-170 602.8 733 51.0
HPP92_003614 Vanilla planifolia HOM05D006009 ORTHO05D007389 6.2e-164 582.0 726 48.9
CDE05G2940 Ceratophyllum demersum HOM05D006009 ORTHO05D007389 3.9e-150 536.2 577 55.8
Cpa.g.sc173.18 Carica papaya HOM05D006009 ORTHO05D007389 3.7e-148 529.6 374 77.3
CAN.G855.52 Capsicum annuum HOM05D006009 ORTHO05D007389 5.3e-139 499.2 393 70.5
FAN18G4220 Fragaria x ananassa HOM05D006009 ORTHO05D007389 1.4e-136 491.1 537 57.2
GSVIVG01023147001 Vitis vinifera HOM05D006009 ORTHO05D007389 7.0e-131 472.2 299 81.6
Sed0013076 Sechium edule HOM05D006009 ORTHO05D007389 4.5e-130 469.5 587 51.4
Manes.10G107000 Manihot esculenta HOM05D006009 ORTHO05D007389 1.5e-128 464.5 432 65.5
Oeu028479.1 Olea europaea HOM05D006009 ORTHO05D007389 1.4e-115 421.4 271 81.2
GSVIVG01023148001 Vitis vinifera HOM05D006009 ORTHO05D007389 1.4e-110 404.8 429 59.4
Sabra01G0173900 Salix brachista HOM05D006009 ORTHO05D007389 2.6e-109 400.6 505 54.7
CAN.G855.51 Capsicum annuum HOM05D006009 ORTHO05D007389 9.5e-96 355.5 379 56.5
ECA234G2367 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.2e-85 322.0 344 57.6
Pp3c17_20400 Physcomitrium patens HOM05D006009 ORTHO05D007389 1.4e-83 315.1 688 33.4
AagrBONN_evm.TU.Sc2ySwM_228.1218 Anthoceros agrestis HOM05D006009 ORTHO05D007389 3.4e-77 293.9 694 32.1
Mapoly0034s0031 Marchantia polymorpha HOM05D006009 ORTHO05D007389 8.4e-76 289.3 678 31.0
Zm00001eb145920 Zea mays HOM05D006009 ORTHO05D007389 1.2e-74 285.4 447 45.0
SHI05061 Sapria himalayana HOM05D000030 ORTHO05D000009 2.8e-71 274.2 438 45.4
Cpa.g.sc173.20 Carica papaya HOM05D006009 ORTHO05D007389 4.4e-69 266.9 375 49.9
Oeu028480.1 Olea europaea HOM05D006009 ORTHO05D007389 1.0e-65 255.8 271 56.5
CBR_g38734 Chara braunii HOM05D006009 ORTHO05D007389 1.1e-64 252.3 715 29.0
SMO343G0014 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 2.4e-59 234.6 697 29.6
Eucgr.D02407 Eucalyptus grandis HOM05D006009 ORTHO05D007389 1.3e-41 175.6 136 69.9
SEGI_34522 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 1.4e-27 129.0 84 72.6
SEGI_19376 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 3.3e-24 117.9 110 57.3
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 1.1e-22 112.8 109 56.0
PRCOL_00003389 Prasinoderma coloniale HOM05D006009 ORTHO05D007389 1.0e-20 106.3 503 24.5
GSVIVG01023072001 Vitis vinifera HOM05D001300 ORTHO05D014438 2.9e-20 104.8 94 61.7
SEGI_26370 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 6.1e-18 97.1 174 40.8
MBI06_g11892_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D004199 3.3e-16 91.3 105 54.3
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.3e-16 91.3 55 87.3
Hund15371 Selenicereus undatus HOM05D006009 ORTHO05D007389 2.8e-15 88.2 173 41.0
SMO343G0089 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 8.2e-15 86.7 228 32.0
MCO13G251 Micromonas commoda HOM05D006009 ORTHO05D007389 5.3e-14 84.0 118 39.8
Oeu028483.1 Olea europaea HOM05D006009 ORTHO05D007389 9.1e-14 83.2 104 48.1
MBI18_g20174_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 4.5e-13 80.9 68 61.8
QL08p014094 Quercus lobata HOM05D006009 ORTHO05D007389 1.0e-12 79.7 99 51.5
Glyma.14G105500 Glycine max HOM05D006009 ORTHO05D007389 6.5e-12 77.0 61 63.9
Zm00001eb351220 Zea mays HOM05D006009 ORTHO05D007389 5.5e-11 73.9 55 67.3
MD15G1442500 Malus domestica HOM05D006009 ORTHO05D007389 1.7e-07 62.4 59 57.6
RhsimUnG0219700 Rhododendron simsii HOM05D006009 ORTHO05D007389 6.3e-07 60.5 41 75.6
SEGI_01187 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 5.3e-06 57.4 154 31.8


User provided reference genes

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