Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G000601 Populus trichocarpa HOM05D004783 ORTHO05D005581 4.5e-146 521.2 252 100.0
Potri.004G229100 Populus trichocarpa HOM05D004783 ORTHO05D005581 2.4e-78 296.2 242 63.2
Sabra01G0174200 Salix brachista HOM05D004783 ORTHO05D005581 2.0e-77 293.1 241 62.7
MD05G1041400 Malus domestica HOM05D004783 ORTHO05D005581 6.1e-50 201.8 231 46.8
Cfa010144 Carpinus fangiana HOM05D004783 ORTHO05D005581 2.3e-49 199.9 242 44.2
Haze_23534 Corylus avellana HOM05D004783 ORTHO05D005581 8.8e-49 198.0 231 45.9
Actinidia24491 Actinidia chinensis HOM05D004783 ORTHO05D005581 1.5e-48 197.2 231 45.9
Prupe.8G057300 Prunus persica HOM05D004783 ORTHO05D005581 2.2e-47 193.4 230 46.1
Lj1P662T20 Lonicera japonica HOM05D004783 ORTHO05D005581 2.8e-47 193.0 232 46.1
CiPaw.13G145000 Carya illinoinensis HOM05D004783 ORTHO05D005581 6.3e-47 191.8 230 45.7
Dinv06816 Davidia involucrata HOM05D004783 ORTHO05D005581 1.4e-46 190.7 231 45.5
Hma1.2p1_0057F.1_g032040 Hydrangea macrophylla HOM05D004783 ORTHO05D005581 1.8e-46 190.3 232 46.1
CSS0029611 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 9.1e-46 188.0 231 46.3
CSS0039136 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 9.1e-46 188.0 231 46.3
Manes.02G133800 Manihot esculenta HOM05D004783 ORTHO05D005581 1.6e-45 187.2 210 48.1
QL03p008874 Quercus lobata HOM05D004783 ORTHO05D005581 2.7e-45 186.4 231 44.2
CSS0049259 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 4.5e-45 185.7 231 45.9
Ciclev10024609m.g Citrus clementina HOM05D004783 ORTHO05D005581 4.5e-45 185.7 234 44.0
QL02p039304 Quercus lobata HOM05D004783 ORTHO05D005581 3.8e-44 182.6 231 43.7
RcHm_v2.0_Chr5g0055041 Rosa chinensis HOM05D004783 ORTHO05D005581 3.8e-44 182.6 233 43.8
TWI79G0945 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 3.8e-44 182.6 210 49.0
Atru.chr9.109 Acer truncatum HOM05D004783 ORTHO05D005581 5.0e-44 182.2 234 42.3
TWI75G1155 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 4.2e-43 179.1 251 42.6
SGA_v2.0_scaffold296G47545 Striga asiatica HOM05D004783 ORTHO05D005581 5.5e-43 178.7 231 37.7
PGSC0003DMG400027882 Solanum tuberosum HOM05D004783 ORTHO05D005581 9.4e-43 177.9 231 42.0
EL10Ac2g04386 Beta vulgaris HOM05D004783 ORTHO05D005581 1.2e-42 177.6 227 41.9
CAN.G147.12 Capsicum annuum HOM05D004783 ORTHO05D005581 1.6e-42 177.2 231 41.6
CANSAT56G4335 Cannabis sativa HOM05D004783 ORTHO05D005581 2.7e-42 176.4 228 45.2
Thecc.04G015500 Theobroma cacao HOM05D004783 ORTHO05D005581 2.7e-42 176.4 226 43.8
Migut.J00915 Erythranthe guttata HOM05D004783 ORTHO05D005581 4.7e-42 175.6 232 41.8
Eucgr.J00651 Eucalyptus grandis HOM05D004783 ORTHO05D005581 8.0e-42 174.9 210 43.8
Nitab4.5_0003308g0060 Nicotiana tabacum HOM05D004783 ORTHO05D005581 8.0e-42 174.9 231 41.1
Peaxi162Scf00315g00041 Petunia axillaris HOM05D004783 ORTHO05D005581 1.0e-41 174.5 227 40.5
Sopen07g021630 Solanum pennellii HOM05D004783 ORTHO05D005581 1.0e-41 174.5 230 40.4
Solyc07g042030.2 Solanum lycopersicum HOM05D004783 ORTHO05D005581 1.4e-41 174.1 230 40.4
Nn2g14491 Nelumbo nucifera HOM05D004783 ORTHO05D005581 3.0e-41 172.9 229 41.0
Lalb_Chr04g0249471 Lupinus albus HOM05D004783 ORTHO05D005581 4.0e-41 172.6 226 41.6
PSO063G6404 Papaver somniferum HOM05D004783 ORTHO05D005581 6.8e-41 171.8 231 40.7
Migut.L01576 Erythranthe guttata HOM05D004783 ORTHO05D005581 8.8e-41 171.4 232 40.1
MSTRG.26477 Avicennia marina HOM05D004783 ORTHO05D005581 1.5e-40 170.6 231 40.3
PSO198G0081 Papaver somniferum HOM05D004783 ORTHO05D005581 1.5e-40 170.6 231 40.3
Atru.BG.182.p Acer truncatum HOM05D004783 ORTHO05D005581 2.6e-40 169.9 232 39.2
Oeu062248.1 Olea europaea HOM05D004783 ORTHO05D005581 2.6e-40 169.9 228 44.3
COL.COLO4_29903 Corchorus olitorius HOM05D004783 ORTHO05D005581 5.7e-40 168.7 232 43.5
MBI04_g31965_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 5.7e-40 168.7 231 42.0
MBI04_g31976_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 5.7e-40 168.7 231 42.0
Glyma.02G276200 Glycine max HOM05D004783 ORTHO05D005581 7.5e-40 168.3 226 37.6
Cpa.g.c26548.5 Carica papaya HOM05D004783 ORTHO05D005581 1.3e-39 167.5 204 43.1
Phvul.008G205300 Phaseolus vulgaris HOM05D004783 ORTHO05D005581 1.3e-39 167.5 233 37.3
Glyma.14G039600 Glycine max HOM05D004783 ORTHO05D005581 1.7e-39 167.2 226 37.2
Sed0014805 Sechium edule HOM05D004783 ORTHO05D005581 2.8e-39 166.4 231 39.8
Ah.10g038540 Amaranthus hybridus HOM05D001978 ORTHO05D003036 4.8e-39 165.6 227 40.1
SGA_v2.0_scaffold21G09513 Striga asiatica HOM05D004783 ORTHO05D005581 8.3e-39 164.9 234 35.9
AUR62023108 Chenopodium quinoa HOM05D004783 ORTHO05D005581 3.1e-38 162.9 227 38.8
Manes.01G175200 Manihot esculenta HOM05D004783 ORTHO05D005581 4.1e-38 162.5 183 47.0
FAN16G2696 Fragaria x ananassa HOM05D004783 ORTHO05D005581 9.1e-38 161.4 230 40.4
Rhsim01G0260800 Rhododendron simsii HOM05D004783 ORTHO05D005581 9.1e-38 161.4 230 40.9
CsaV3_2G007350 Cucumis sativus L. HOM05D004783 ORTHO05D005581 1.6e-37 160.6 223 38.1
Ah.16g100720 Amaranthus hybridus HOM05D004783 ORTHO05D005581 3.5e-37 159.5 236 37.3
ECA232G0714 Erigeron canadensis HOM05D004783 ORTHO05D005581 3.5e-37 159.5 210 42.9
ECA234G4279 Erigeron canadensis HOM05D004783 ORTHO05D005581 1.0e-36 157.9 237 38.8
Medtr5g088510 Medicago truncatula HOM05D004783 ORTHO05D005581 2.3e-36 156.8 230 37.4
AUR62009429 Chenopodium quinoa HOM05D004783 ORTHO05D005581 2.9e-36 156.4 227 38.3
Psat2g021520 Pisum sativum HOM05D004783 ORTHO05D005581 2.9e-36 156.4 224 37.1
SHI25070 Sapria himalayana HOM05D004783 ORTHO05D005581 2.9e-36 156.4 238 38.7
FvH4_3g29690 Fragaria vesca HOM05D004783 ORTHO05D005581 3.8e-36 156.0 233 38.6
LjContig00564g0007311 Lotus japonicus HOM05D004783 ORTHO05D005581 5.0e-36 155.6 223 38.6
Lsat_1_v5_gn_4_139241 Lactuca sativa HOM05D004783 ORTHO05D005581 6.6e-36 155.2 237 38.8
Aa31LG4G9300 Aethionema arabicum HOM05D004783 ORTHO05D005581 1.5e-35 154.1 205 39.5
AT1G71210 Arabidopsis thaliana HOM05D004783 ORTHO05D005581 1.9e-35 153.7 205 40.0
PGR119G2361 Punica granatum HOM05D004783 ORTHO05D005581 2.5e-35 153.3 216 39.4
Lj4g0006774 Lotus japonicus HOM05D004783 ORTHO05D005581 3.3e-35 152.9 219 37.4
Gohir.A02G106600 Gossypium hirsutum HOM05D004783 ORTHO05D005581 4.2e-35 152.5 223 39.5
Lsat_1_v5_gn_4_139140 Lactuca sativa HOM05D004783 ORTHO05D005581 5.5e-35 152.1 210 40.0
THA.LOC104800219 Tarenaya hassleriana HOM05D004783 ORTHO05D005581 7.2e-35 151.8 228 38.2
AL2G30824 Arabidopsis lyrata HOM05D004783 ORTHO05D005581 1.2e-34 151.0 205 40.5
BraA07t31317Z Brassica rapa HOM05D004783 ORTHO05D005581 1.2e-34 151.0 197 42.1
TPR.G11801 Trifolium pratense HOM05D004783 ORTHO05D005581 1.2e-34 151.0 225 36.0
A07p37560 Brassica napus HOM05D004783 ORTHO05D005581 1.6e-34 150.6 197 42.1
COL.COLO4_04586 Corchorus olitorius HOM05D004783 ORTHO05D005581 1.6e-34 150.6 198 44.4
Gorai.003G087500 Gossypium raimondii HOM05D004783 ORTHO05D005581 2.1e-34 150.2 223 39.0
VMungo0647G1136 Vigna mungo HOM05D004783 ORTHO05D005581 2.8e-34 149.8 224 36.6
C06p45300 Brassica napus HOM05D004783 ORTHO05D005581 4.7e-34 149.1 197 41.6
BolC6t39586H Brassica oleracea HOM05D004783 ORTHO05D005581 4.7e-34 149.1 197 41.6
Thhalv10018115m.g Eutrema salsugineum HOM05D004783 ORTHO05D005581 1.4e-33 147.5 197 40.1
TPR.G14625 Trifolium pratense HOM05D004783 ORTHO05D005581 2.3e-33 146.7 227 34.8
CDE09G0275 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 4.0e-33 146.0 230 36.5
HanXRQChr15g0495131 Helianthus annuus HOM05D004783 ORTHO05D005581 4.0e-33 146.0 239 37.2
BcaB03g14878 Brassica carinata HOM05D004783 ORTHO05D005581 5.2e-33 145.6 197 41.1
Carub.0002s1809 Capsella rubella HOM05D004783 ORTHO05D005581 5.2e-33 145.6 205 38.5
TAR622G0302 Trochodendron aralioides HOM05D004783 ORTHO05D005581 5.2e-33 145.6 232 38.4
TAR622G0815 Trochodendron aralioides HOM05D004783 ORTHO05D005581 5.2e-33 145.6 232 38.4
CDE02G3572 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 3.4e-32 142.9 230 35.7
MD10G1047800 Malus domestica HOM05D004783 ORTHO05D005581 3.4e-32 142.9 231 39.0
ATR0605G071 Amborella trichopoda HOM05D004783 ORTHO05D005581 5.7e-32 142.1 226 35.4
Sp5g26370 Schrenkiella parvula HOM05D004783 ORTHO05D005581 1.7e-31 140.6 197 40.1
Gohir.A05G337100 Gossypium hirsutum HOM05D004783 ORTHO05D005581 8.3e-31 138.3 230 37.0
CARHR064510 Cardamine hirsuta HOM05D004783 ORTHO05D005581 4.1e-30 136.0 197 37.1
Cc06_g12410 Coffea canephora HOM05D004783 ORTHO05D005581 5.4e-30 135.6 212 37.7
Medtr5g088490 Medicago truncatula HOM05D004783 ORTHO05D005581 9.2e-30 134.8 207 35.3
Gohir.D04G075700 Gossypium hirsutum HOM05D004783 ORTHO05D005581 1.3e-28 131.0 229 35.4
Gorai.012G085500 Gossypium raimondii HOM05D004783 ORTHO05D005581 1.3e-28 131.0 229 35.4
FAN11G1373 Fragaria x ananassa HOM05D004783 ORTHO05D005581 2.5e-27 126.7 232 34.1
FAN25G1477 Fragaria x ananassa HOM05D004783 ORTHO05D005581 2.5e-27 126.7 229 34.1
BolC6t39583H Brassica oleracea HOM05D004783 ORTHO05D005581 4.3e-27 125.9 175 39.4
FAN15G2228 Fragaria x ananassa HOM05D004783 ORTHO05D005581 9.5e-27 124.8 229 34.1
Gohir.D03G072203 Gossypium hirsutum HOM05D004783 ORTHO05D005581 2.8e-26 123.2 181 38.7
Sc10g0000400 Simmondsia chinensis HOM05D004783 ORTHO05D005581 1.4e-25 120.9 144 41.7
SalBow6G2874 Salvia bowleyana HOM05D004783 ORTHO05D005581 2.6e-24 116.7 233 30.5
CDE12G0310 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 5.8e-24 115.5 227 32.2
Ca_06171_v3 Cicer arietinum L. HOM05D004783 ORTHO05D005581 9.8e-24 114.8 224 33.0
FAN18G1946 Fragaria x ananassa HOM05D004783 ORTHO05D005581 3.2e-22 109.8 156 40.4
FAN26G1702 Fragaria x ananassa HOM05D004783 ORTHO05D005581 4.1e-22 109.4 158 40.5
DCAR_019962 Daucus carota HOM05D004783 ORTHO05D005581 4.6e-21 105.9 234 33.3
FAN09G4036 Fragaria x ananassa HOM05D004783 ORTHO05D005581 4.6e-21 105.9 156 39.7
FAN09G0480 Fragaria x ananassa HOM05D004783 ORTHO05D005581 1.7e-20 104.0 135 42.2
Os02g0127600 Oryza sativa ssp. japonica HOM05D004783 ORTHO05D005581 2.3e-20 103.6 214 33.2
CDE01G0049 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 5.0e-20 102.4 225 30.2
HPP92_028041 Vanilla planifolia HOM05D004783 ORTHO05D005581 6.6e-20 102.1 216 31.5
Zm00001eb231010 Zea mays HOM05D004783 ORTHO05D005581 4.0e-17 92.8 215 29.3
SEGI_13595 Sequoiadendron giganteum HOM05D004783 ORTHO05D005581 2.9e-15 86.7 111 42.3
SGA_v2.0_scaffold9G04849 Striga asiatica HOM05D004783 ORTHO05D005581 6.6e-12 75.5 121 38.8
Ah.05g173850 Amaranthus hybridus HOM05D004783 ORTHO05D005581 9.5e-11 71.6 93 38.7
Psat0ss7919g0040 Pisum sativum HOM05D004783 ORTHO05D005581 2.8e-10 70.1 94 37.2
SGA_v2.0_scaffold108G30882 Striga asiatica HOM05D004783 ORTHO05D005581 2.0e-08 63.9 76 44.7
ATR0697G207 Amborella trichopoda HOM05D004783 ORTHO05D005581 4.4e-08 62.8 85 38.8
CAN.G986.34 Capsicum annuum HOM05D004783 ORTHO05D005581 9.9e-08 61.6 153 27.5
FAN05G2593 Fragaria x ananassa HOM05D004783 ORTHO05D005581 6.4e-07 58.9 78 38.5
FAN07G0420 Fragaria x ananassa HOM05D004783 ORTHO05D005581 6.4e-07 58.9 78 38.5
FAN10G2924 Fragaria x ananassa HOM05D004783 ORTHO05D005581 6.4e-07 58.9 78 38.5
FAN11G3663 Fragaria x ananassa HOM05D004783 ORTHO05D005581 6.4e-07 58.9 78 38.5
FAN16G1650 Fragaria x ananassa HOM05D004783 ORTHO05D005581 6.4e-07 58.9 78 38.5
FAN27G1421 Fragaria x ananassa HOM05D004783 ORTHO05D005581 6.4e-07 58.9 78 38.5
SGA_v2.0_scaffold80G25712 Striga asiatica HOM05D000897 ORTHO05D000716 6.4e-07 58.9 71 43.7
SEGI_02727 Sequoiadendron giganteum HOM05D004783 ORTHO05D005581 8.3e-07 58.5 111 34.2


User provided reference genes

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