Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G263300 Populus trichocarpa HOM05D006514 ORTHO05D008138 5.6e-28 126.7 57 100.0
Potri.001G000400 Populus trichocarpa HOM05D006514 ORTHO05D008138 8.2e-27 122.9 55 100.0
Manes.05G162000 Manihot esculenta HOM05D006514 ORTHO05D008138 5.3e-26 120.2 57 91.2
Potri.002G263100 Populus trichocarpa HOM05D006514 ORTHO05D008138 3.4e-25 117.5 55 96.4
Dinv36061 Davidia involucrata HOM05D006514 ORTHO05D008138 7.6e-25 116.3 57 91.2
PGR004G0716 Punica granatum HOM05D006514 ORTHO05D008138 7.6e-25 116.3 57 87.7
TWI12G0206 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 3.8e-24 114.0 57 87.7
RcHm_v2.0_Chr7g0176991 Rosa chinensis HOM05D006514 ORTHO05D008138 4.9e-24 113.6 57 87.7
Thecc.08G024100 Theobroma cacao HOM05D006514 ORTHO05D008138 1.1e-23 112.5 55 90.9
Migut.N00499 Erythranthe guttata HOM05D006514 ORTHO05D008138 2.5e-23 111.3 55 90.9
Hma1.2p1_0023F.1_g014910 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 4.2e-23 110.5 54 90.7
RcHm_v2.0_Chr5g0070251 Rosa chinensis HOM05D006514 ORTHO05D008138 4.2e-23 110.5 57 86.0
Sed0005431 Sechium edule HOM05D006514 ORTHO05D008138 4.2e-23 110.5 56 83.9
CsaV3_5G038690 Cucumis sativus L. HOM05D006514 ORTHO05D008138 5.5e-23 110.2 56 82.1
TWI36G0631 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 5.5e-23 110.2 53 90.6
CiPaw.13G075100 Carya illinoinensis HOM05D006514 ORTHO05D008138 7.1e-23 109.8 57 84.2
Hma1.2p1_0203F.1_g086530 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 9.3e-23 109.4 54 88.9
Prupe.6G054600 Prunus persica HOM05D006514 ORTHO05D008138 1.6e-22 108.6 53 90.6
Ciclev10023245m.g Citrus clementina HOM05D006514 ORTHO05D008138 2.7e-22 107.8 55 85.5
Duzib041G0253 Durio zibethinus HOM05D006514 ORTHO05D008138 2.7e-22 107.8 53 90.6
Duzib116G0168 Durio zibethinus HOM05D006514 ORTHO05D008138 2.7e-22 107.8 55 87.3
MSTRG.24295 Avicennia marina HOM05D006514 ORTHO05D008138 3.5e-22 107.5 56 85.7
Gohir.D02G094200 Gossypium hirsutum HOM05D006514 ORTHO05D008138 3.5e-22 107.5 55 89.1
Gorai.005G107100 Gossypium raimondii HOM05D006514 ORTHO05D008138 3.5e-22 107.5 55 89.1
QL12p026537 Quercus lobata HOM05D006514 ORTHO05D008138 3.5e-22 107.5 56 83.9
QL12p026562 Quercus lobata HOM05D006514 ORTHO05D008138 3.5e-22 107.5 56 83.9
Cc07_g09230 Coffea canephora HOM05D006514 ORTHO05D008138 4.6e-22 107.1 55 81.8
CiPaw.07G206900 Carya illinoinensis HOM05D006514 ORTHO05D008138 6.0e-22 106.7 53 86.8
Duzib093G1568 Durio zibethinus HOM05D000207 ORTHO05D001482 1.0e-21 105.9 55 85.5
GSVIVG01037960001 Vitis vinifera HOM05D006514 ORTHO05D008138 1.0e-21 105.9 56 82.1
Gohir.A03G078101 Gossypium hirsutum HOM05D006514 ORTHO05D008138 1.3e-21 105.5 55 85.5
Carub.0004s1216 Capsella rubella HOM05D006514 ORTHO05D008138 1.8e-21 105.1 55 83.6
FvH4_3g38980 Fragaria vesca HOM05D006514 ORTHO05D008138 2.3e-21 104.8 53 86.8
FAN21G1628 Fragaria x ananassa HOM05D006514 ORTHO05D008138 2.3e-21 104.8 53 86.8
unitig_85.g27236 Utricularia gibba HOM05D006514 ORTHO05D008138 2.3e-21 104.8 55 83.6
AT2G30942 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 3.0e-21 104.4 55 81.8
SalBow8G0801 Salvia bowleyana HOM05D006514 ORTHO05D008138 3.9e-21 104.0 53 88.7
Gohir.D01G105000 Gossypium hirsutum HOM05D006514 ORTHO05D008138 5.1e-21 103.6 52 90.4
Gorai.002G129000 Gossypium raimondii HOM05D006514 ORTHO05D008138 5.1e-21 103.6 52 90.4
Eucgr.F04183 Eucalyptus grandis HOM05D006514 ORTHO05D008138 8.7e-21 102.8 52 88.5
Gohir.A01G116600 Gossypium hirsutum HOM05D006514 ORTHO05D008138 1.1e-20 102.4 52 88.5
Cc10_g03090 Coffea canephora HOM05D006514 ORTHO05D008138 1.5e-20 102.1 53 81.1
CSS0043768 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 1.9e-20 101.7 57 78.9
FAN16G2060 Fragaria x ananassa HOM05D006514 ORTHO05D008138 4.3e-20 100.5 53 84.9
AL4G25910 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 5.7e-20 100.1 53 83.0
BcaB06g28396 Brassica carinata HOM05D006514 ORTHO05D008138 7.4e-20 99.8 53 81.1
BcaB06g28465 Brassica carinata HOM05D006514 ORTHO05D008138 7.4e-20 99.8 53 81.1
C04p60100 Brassica napus HOM05D006514 ORTHO05D008138 7.4e-20 99.8 53 81.1
BolC4t27513H Brassica oleracea HOM05D006514 ORTHO05D008138 7.4e-20 99.8 53 81.1
MD11G1070700 Malus domestica HOM05D006514 ORTHO05D008138 9.7e-20 99.4 59 78.0
THA.LOC104800827 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 9.7e-20 99.4 55 78.2
A04p23650 Brassica napus HOM05D006514 ORTHO05D008138 1.3e-19 99.0 53 81.1
BraA04t17890Z Brassica rapa HOM05D006514 ORTHO05D008138 1.3e-19 99.0 53 81.1
Rhsim08G0113100 Rhododendron simsii HOM05D006514 ORTHO05D008138 1.6e-19 98.6 52 82.7
Thhalv10009956m.g Eutrema salsugineum HOM05D006514 ORTHO05D008138 2.2e-19 98.2 55 78.2
AL1G16530 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 2.8e-19 97.8 55 76.4
AT1G06515 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 2.8e-19 97.8 55 76.4
Carub.0001s0587 Capsella rubella HOM05D006514 ORTHO05D008138 2.8e-19 97.8 55 76.4
MD03G1065900 Malus domestica HOM05D006514 ORTHO05D008138 3.7e-19 97.4 59 76.3
THA.LOC104815841 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 4.8e-19 97.1 53 81.1
CARHR006120 Cardamine hirsuta HOM05D006514 ORTHO05D008138 1.8e-18 95.1 53 79.2
SHI24607 Sapria himalayana HOM05D006514 ORTHO05D008138 2.4e-18 94.7 52 76.9
PGSC0003DMG400015499 Solanum tuberosum HOM05D006514 ORTHO05D008138 2.4e-18 94.7 56 71.4
vmacro17857 Vaccinium macrocarpon HOM05D006514 ORTHO05D008138 4.1e-18 94.0 53 81.1
Oeu025460.1 Olea europaea HOM05D006514 ORTHO05D008138 6.9e-18 93.2 53 75.5
BcaB02g06800 Brassica carinata HOM05D006514 ORTHO05D008138 9.0e-18 92.8 53 77.4
BcaC07g42061 Brassica carinata HOM05D006514 ORTHO05D008138 9.0e-18 92.8 53 77.4
A09p66940 Brassica napus HOM05D006514 ORTHO05D008138 9.0e-18 92.8 53 77.4
A10p05150 Brassica napus HOM05D006514 ORTHO05D008138 9.0e-18 92.8 53 77.4
C05p04760 Brassica napus HOM05D006514 ORTHO05D008138 9.0e-18 92.8 53 77.4
C08p51170 Brassica napus HOM05D006514 ORTHO05D008138 9.0e-18 92.8 53 77.4
BolC5t29247H Brassica oleracea HOM05D006514 ORTHO05D008138 9.0e-18 92.8 53 77.4
BolC8t52644H Brassica oleracea HOM05D006514 ORTHO05D008138 9.0e-18 92.8 53 77.4
BraA09t42029Z Brassica rapa HOM05D006514 ORTHO05D008138 9.0e-18 92.8 53 77.4
BraA10t42782Z Brassica rapa HOM05D006514 ORTHO05D008138 9.0e-18 92.8 53 77.4
FAN11G3963 Fragaria x ananassa HOM05D006514 ORTHO05D008138 9.0e-18 92.8 53 79.2
Migut.H00182 Erythranthe guttata HOM05D006514 ORTHO05D008138 1.2e-17 92.4 53 73.6
Lj4g0001345 Lotus japonicus HOM05D006514 ORTHO05D008138 2.6e-17 91.3 56 71.4
Oeu009866.1 Olea europaea HOM05D006514 ORTHO05D008138 3.4e-17 90.9 53 73.6
PSO017G0544 Papaver somniferum HOM05D006514 ORTHO05D008138 3.4e-17 90.9 54 75.9
Zm00001eb368290 Zea mays HOM05D006514 ORTHO05D008138 3.4e-17 90.9 55 69.1
PSO339G3417 Papaver somniferum HOM05D006514 ORTHO05D008138 4.5e-17 90.5 55 69.1
PSO801G0156 Papaver somniferum HOM05D006514 ORTHO05D008138 4.5e-17 90.5 55 69.1
CANSAT01G0756 Cannabis sativa HOM05D006514 ORTHO05D008138 5.9e-17 90.1 48 77.1
DCAR_025932 Daucus carota HOM05D006514 ORTHO05D008138 1.3e-16 89.0 46 82.6
Glyma.05G140300 Glycine max HOM05D006514 ORTHO05D008138 1.3e-16 89.0 57 73.7
Glyma.08G095700 Glycine max HOM05D006514 ORTHO05D008138 1.7e-16 88.6 57 71.9
CARHR124460 Cardamine hirsuta HOM05D006514 ORTHO05D008138 2.2e-16 88.2 56 71.4
arahy.Tifrunner.gnm1.ann1.0361F1 Arachis hypogaea HOM05D006514 ORTHO05D008138 2.9e-16 87.8 56 69.6
arahy.Tifrunner.gnm1.ann1.TUTF01 Arachis hypogaea HOM05D006514 ORTHO05D008138 2.9e-16 87.8 56 69.6
arahy.Tifrunner.gnm1.ann1.40255N Arachis hypogaea HOM05D006514 ORTHO05D008138 3.8e-16 87.4 56 67.9
arahy.Tifrunner.gnm1.ann1.4217G9 Arachis hypogaea HOM05D006514 ORTHO05D008138 8.5e-16 86.3 53 71.7
Nn1g05070 Nelumbo nucifera HOM05D006514 ORTHO05D008138 1.1e-15 85.9 50 76.0
CAN.G358.121 Capsicum annuum HOM05D006514 ORTHO05D008138 1.4e-15 85.5 54 68.5
CDE04G3777 Ceratophyllum demersum HOM05D006514 ORTHO05D008138 5.5e-15 83.6 50 76.0
Lalb_Chr13g0293771 Lupinus albus HOM05D006514 ORTHO05D008138 5.5e-15 83.6 55 70.9
Os07g0446900 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 5.5e-15 83.6 56 62.5
Phvul.002G183600 Phaseolus vulgaris HOM05D006514 ORTHO05D008138 5.5e-15 83.6 55 72.7
FAN16G1919 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.6e-14 82.0 95 47.4
TAR628G0909 Trochodendron aralioides HOM05D006514 ORTHO05D008138 7.9e-14 79.7 52 71.2
Lalb_Chr11g0074141 Lupinus albus HOM05D006514 ORTHO05D008138 1.4e-13 79.0 57 68.4
Ca_07248_v3 Cicer arietinum L. HOM05D006514 ORTHO05D008138 1.8e-13 78.6 52 73.1
SEGI_00006 Sequoiadendron giganteum HOM05D006514 ORTHO05D008138 5.1e-13 77.0 53 64.2
Aa31LG1G7590 Aethionema arabicum HOM05D006514 ORTHO05D008138 1.3e-11 72.4 87 46.0
ATR0733G176 Amborella trichopoda HOM05D006514 ORTHO05D008138 2.8e-11 71.2 44 72.7
CSS0047171 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 6.3e-11 70.1 34 85.3
Lalb_Chr08g0232711 Lupinus albus HOM05D006514 ORTHO05D008138 8.2e-11 69.7 58 63.8
Os04g0518650 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 1.4e-10 68.9 55 58.2
Ah.06g182360 Amaranthus hybridus HOM05D006514 ORTHO05D008138 1.5e-09 65.5 31 83.9
Nitab4.5_0003410g0060 Nicotiana tabacum HOM05D006514 ORTHO05D008138 3.4e-09 64.3 28 92.9
FAN11G3335 Fragaria x ananassa HOM05D006514 ORTHO05D008138 4.5e-09 63.9 31 90.3
Medtr7g024350 Medicago truncatula HOM05D006514 ORTHO05D008138 7.7e-09 63.2 40 70.0
Os07g0446600 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 1.7e-08 62.0 31 83.9
FAN25G0650 Fragaria x ananassa HOM05D006514 ORTHO05D008138 2.2e-08 61.6 31 87.1
MD12G1007100 Malus domestica HOM05D006514 ORTHO05D008138 5.0e-08 60.5 34 73.5
CSS0042829 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 6.5e-08 60.1 79 43.0
CSS0047355 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 6.5e-08 60.1 79 43.0
Zm00001eb096700 Zea mays HOM05D007724 ORTHO05D009363 1.1e-07 59.3 54 48.1
C04p41290 Brassica napus HOM05D006514 ORTHO05D008138 3.2e-07 57.8 31 77.4
Lsat_1_v5_gn_1_26540 Lactuca sativa HOM05D006514 ORTHO05D008138 2.1e-06 55.1 35 71.4
Pp3c4_25750 Physcomitrium patens HOM05D006514 ORTHO05D008138 4.7e-06 53.9 47 48.9


User provided reference genes

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