Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 8.2e-126 453.8 233 100.0
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 3.0e-120 435.3 233 95.7
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 1.0e-99 367.1 236 81.8
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 2.5e-98 362.5 233 78.5
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 1.2e-97 360.1 233 78.5
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 1.6e-97 359.8 233 80.3
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 2.1e-97 359.4 233 78.1
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 5.2e-96 354.8 233 78.5
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 7.8e-92 340.9 234 76.1
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 1.7e-91 339.7 231 74.0
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 6.6e-91 337.8 236 72.5
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 8.6e-91 337.4 232 71.6
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 9.5e-90 334.0 237 72.2
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 2.1e-89 332.8 233 76.4
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.1e-89 332.8 234 74.4
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 6.2e-89 331.3 231 73.2
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 1.8e-88 329.7 230 73.5
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.8e-88 329.7 233 71.7
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 4.0e-88 328.6 242 69.8
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 5.2e-88 328.2 234 72.2
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.8e-88 327.8 234 73.1
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 4.4e-87 325.1 234 73.1
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.2e-86 322.8 234 72.6
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 3.7e-86 322.0 233 70.4
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 6.4e-86 321.2 233 71.2
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 1.1e-85 320.5 233 71.2
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.4e-85 320.1 234 72.6
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.9e-85 319.7 233 73.0
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 9.2e-85 317.4 241 70.5
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.7e-84 315.8 233 71.2
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 4.6e-84 315.1 233 72.1
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.7e-83 313.2 229 71.2
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 3.9e-83 312.0 229 70.7
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 2.5e-82 309.3 248 68.1
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 3.3e-82 308.9 233 72.1
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 7.3e-82 307.8 315 57.8
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 1.2e-81 307.0 249 64.7
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.2e-80 301.6 208 74.5
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 5.2e-80 301.6 208 74.5
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 8.9e-80 300.8 233 67.0
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 1.5e-79 300.1 236 66.1
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.6e-79 299.3 208 74.5
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 7.6e-79 297.7 187 80.7
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 1.9e-77 293.1 224 68.8
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 1.2e-76 290.4 233 67.0
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 2.7e-76 289.3 232 69.4
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 2.7e-76 289.3 243 66.3
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 3.5e-76 288.9 234 67.1
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 3.0e-75 285.8 229 68.6
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 3.9e-75 285.4 232 69.0
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 5.1e-75 285.0 328 52.4
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 8.6e-75 284.3 238 66.0
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 8.6e-75 284.3 235 66.8
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 8.6e-75 284.3 224 67.9
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 8.6e-75 284.3 224 67.9
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 1.9e-74 283.1 236 65.7
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 2.5e-74 282.7 234 66.7
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 5.6e-74 281.6 186 78.0
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 9.6e-74 280.8 224 65.6
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 2.8e-73 279.3 232 65.1
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 5.2e-72 275.0 224 65.6
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 8.9e-72 274.2 235 64.7
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.2e-71 273.9 242 63.6
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.5e-71 273.5 230 62.6
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 4.4e-71 271.9 224 63.8
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 1.7e-70 270.0 227 63.4
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 4.9e-70 268.5 220 65.9
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 4.9e-70 268.5 227 64.8
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 4.2e-69 265.4 235 63.4
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 1.6e-68 263.5 235 63.0
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.6e-68 263.5 224 65.6
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 2.7e-68 262.7 235 63.0
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.0e-67 260.8 187 73.8
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 5.1e-67 258.5 235 62.6
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 1.5e-66 256.9 234 62.4
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 1.5e-66 256.9 234 61.5
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 1.9e-66 256.5 232 62.5
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 2.5e-66 256.1 219 66.7
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 3.3e-66 255.8 250 59.2
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 1.6e-65 253.4 276 54.7
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 1.6e-65 253.4 224 62.5
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 2.8e-65 252.7 212 66.5
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 4.8e-65 251.9 223 62.3
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 1.1e-64 250.8 233 60.5
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 1.1e-64 250.8 225 61.3
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 4.0e-64 248.8 208 64.9
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 6.9e-64 248.1 224 62.1
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 4.5e-63 245.4 173 71.1
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 9.9e-63 244.2 252 56.7
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 1.3e-62 243.8 228 59.2
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 2.9e-62 242.7 234 59.4
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 4.9e-62 241.9 235 59.6
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 6.4e-62 241.5 240 57.5
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 8.4e-62 241.1 234 59.0
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 1.1e-61 240.7 188 70.2
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 1.9e-61 240.0 240 58.3
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 4.2e-61 238.8 240 57.1
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 4.2e-61 238.8 146 81.5
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 7.1e-61 238.0 228 56.6
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 1.6e-60 236.9 225 59.1
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 6.7e-59 231.5 242 57.0
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 1.5e-58 230.3 233 59.7
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 3.3e-58 229.2 227 56.8
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 3.3e-58 229.2 226 58.4
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 7.4e-58 228.0 212 55.2
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.4e-56 223.8 195 65.1
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 1.8e-56 223.4 209 57.4
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 6.9e-56 221.5 187 66.8
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 1.2e-55 220.7 192 63.5
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 7.6e-55 218.0 234 53.4
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.3e-54 217.2 209 55.0
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 1.3e-54 217.2 235 54.9
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 2.2e-54 216.5 232 57.3
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 2.9e-54 216.1 234 54.3
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 3.8e-54 215.7 237 54.9
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 6.4e-54 214.9 192 64.1
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 9.3e-53 211.1 224 56.2
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 6.0e-52 208.4 293 44.0
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 6.0e-52 208.4 243 53.5
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 3.0e-51 206.1 241 52.3
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 6.7e-51 204.9 251 52.6
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 2.5e-50 203.0 216 55.1
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 2.5e-50 203.0 212 55.7
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 2.5e-50 203.0 204 58.3
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 4.3e-50 202.2 203 55.7
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 1.3e-49 200.7 207 55.1
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 1.3e-49 200.7 233 54.5
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 3.1e-48 196.1 206 54.9
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 5.3e-48 195.3 209 54.1
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 9.0e-48 194.5 233 51.5
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 1.2e-47 194.1 209 53.6
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 1.2e-47 194.1 209 53.6
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 1.2e-47 194.1 226 51.8
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.2e-47 194.1 189 55.0
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 2.6e-47 193.0 247 50.6
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 2.6e-47 193.0 246 50.8
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 7.6e-47 191.4 183 57.9
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 1.0e-46 191.0 201 53.7
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 4.2e-45 185.7 203 54.2
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 1.2e-44 184.1 201 54.2
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 3.9e-43 179.1 145 66.2
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 8.7e-43 177.9 160 62.5
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 2.5e-42 176.4 136 66.9
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 2.5e-42 176.4 202 54.0
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 5.7e-42 175.3 196 52.6
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 1.2e-39 167.5 130 67.7
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 2.6e-39 166.4 116 65.5
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 3.4e-39 166.0 197 53.8
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 2.2e-38 163.3 105 74.3
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 2.7e-36 156.4 155 61.3
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 4.6e-36 155.6 118 62.7
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 1.3e-35 154.1 105 72.4
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 7.4e-34 148.3 194 47.9
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 1.1e-32 144.4 196 50.0
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 7.7e-31 138.3 85 77.6
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 7.7e-31 138.3 85 77.6
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 3.8e-30 136.0 88 72.7
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 5.0e-30 135.6 165 49.7
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 3.0e-27 126.3 81 72.8
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 2.2e-25 120.2 140 48.6
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 5.9e-23 112.1 222 37.8
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 7.7e-23 111.7 105 62.9
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 2.2e-17 93.6 108 46.3
QL09p050907 Quercus lobata HOM05D004056 ORTHO05D004894 1.5e-13 80.9 101 52.5
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 1.8e-11 73.9 40 85.0
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 1.5e-10 70.9 127 37.8
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 7.5e-10 68.6 110 38.2
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 8.2e-09 65.1 43 67.4
Dinv28834 Davidia involucrata HOM05D004056 ORTHO05D183586 7.0e-08 62.0 79 49.4
Prupe.8G198200 Prunus persica HOM05D011949 ORTHO05D019137 3.5e-07 59.7 52 63.5
Prupe.8G198300 Prunus persica HOM05D011949 ORTHO05D019137 6.5e-06 55.5 57 57.9


User provided reference genes

Program Settings