Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 2.1e-152 542.3 281 100.0
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 1.4e-151 539.7 281 99.6
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 2.0e-142 509.2 281 94.3
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 1.5e-137 493.0 253 92.5
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 1.9e-137 492.7 281 90.7
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 2.5e-137 492.3 281 88.3
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 3.3e-137 491.9 253 92.5
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 2.1e-136 489.2 252 93.3
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 8.1e-136 487.3 254 91.7
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 1.8e-135 486.1 281 89.0
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 3.1e-135 485.3 250 92.4
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 3.1e-135 485.3 251 92.0
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 1.2e-134 483.4 289 85.5
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 2.6e-134 482.3 254 90.6
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 2.6e-134 482.3 281 87.9
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 2.6e-134 482.3 281 88.6
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 2.6e-134 482.3 281 87.2
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 4.5e-134 481.5 283 87.6
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 7.6e-134 480.7 251 90.8
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 7.6e-134 480.7 283 89.0
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 9.9e-134 480.3 292 87.0
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 9.9e-134 480.3 281 85.1
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 1.3e-133 479.9 284 86.3
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.3e-133 479.9 250 92.0
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.7e-133 479.6 250 92.0
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.7e-133 479.6 251 91.2
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 1.7e-133 479.6 251 91.2
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 1.7e-133 479.6 251 90.8
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 2.9e-133 478.8 253 90.1
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 3.8e-133 478.4 286 88.1
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 3.8e-133 478.4 251 91.2
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.8e-133 478.4 251 91.2
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 3.8e-133 478.4 251 90.8
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.4e-133 477.6 251 90.8
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 8.4e-133 477.2 288 86.5
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 8.4e-133 477.2 254 90.2
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 8.4e-133 477.2 281 87.9
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 1.1e-132 476.9 244 93.4
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 1.1e-132 476.9 287 87.1
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 1.1e-132 476.9 275 89.1
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 1.1e-132 476.9 254 88.2
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 1.4e-132 476.5 251 90.4
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 1.9e-132 476.1 254 89.8
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 2.4e-132 475.7 248 91.5
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 3.2e-132 475.3 281 86.8
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.2e-132 475.3 251 90.4
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 3.2e-132 475.3 281 83.6
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 4.2e-132 474.9 249 90.8
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 9.3e-132 473.8 249 91.2
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 9.3e-132 473.8 254 89.4
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 1.2e-131 473.4 285 86.3
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 2.1e-131 472.6 250 90.4
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 2.1e-131 472.6 250 90.4
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 2.7e-131 472.2 249 90.8
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 2.7e-131 472.2 299 83.3
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 3.5e-131 471.9 253 88.9
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 3.5e-131 471.9 281 87.2
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 4.6e-131 471.5 251 89.6
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 4.6e-131 471.5 249 90.4
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 7.9e-131 470.7 281 86.5
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 2.3e-130 469.2 249 90.4
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 2.3e-130 469.2 279 87.8
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 3.0e-130 468.8 284 83.1
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 3.9e-130 468.4 250 89.2
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 3.9e-130 468.4 253 88.5
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 3.9e-130 468.4 249 90.4
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 3.9e-130 468.4 247 89.9
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 6.7e-130 467.6 253 89.3
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 6.7e-130 467.6 254 87.8
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 8.7e-130 467.2 250 90.0
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 8.7e-130 467.2 252 88.1
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 1.1e-129 466.8 250 89.2
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.1e-129 466.8 275 86.9
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 1.5e-129 466.5 251 88.4
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 1.9e-129 466.1 279 87.1
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 1.9e-129 466.1 250 89.2
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 1.9e-129 466.1 249 90.0
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 3.3e-129 465.3 253 88.5
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 3.3e-129 465.3 281 83.3
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 4.3e-129 464.9 251 89.6
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 5.6e-129 464.5 274 84.7
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 1.3e-128 463.4 252 87.7
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 2.8e-128 462.2 250 87.2
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 4.8e-128 461.5 246 88.6
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 4.8e-128 461.5 248 87.5
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 6.2e-128 461.1 249 87.6
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 2.4e-127 459.1 249 88.0
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 4.5e-126 454.9 253 86.6
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 7.9e-123 444.1 247 86.2
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 8.7e-122 440.7 246 85.0
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 3.7e-120 435.3 266 81.2
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 8.2e-120 434.1 249 85.5
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 1.4e-119 433.3 348 65.5
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 5.3e-119 431.4 246 83.3
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 2.0e-118 429.5 284 82.0
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 2.6e-118 429.1 223 92.8
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 4.5e-118 428.3 228 90.4
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 5.5e-116 421.4 244 81.6
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 2.1e-115 419.5 242 82.2
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 1.9e-108 396.4 244 77.5
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 3.0e-106 389.0 261 79.7
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 2.5e-100 369.4 191 93.7
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 1.4e-95 353.6 190 89.5
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 2.2e-93 346.3 245 69.0
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 3.9e-90 335.5 171 94.2
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 1.5e-89 333.6 171 93.0
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 8.2e-88 327.8 181 89.5
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 4.5e-86 322.0 168 91.7
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 8.0e-83 311.2 183 84.7
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 8.2e-80 301.2 195 84.6
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 8.5e-77 291.2 185 76.2
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.2e-75 287.3 164 86.6
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.4e-74 283.9 164 84.1
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.0e-74 282.3 164 85.4
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 9.8e-73 277.7 145 94.5
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 2.7e-70 269.6 147 90.5
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 7.7e-70 268.1 155 87.1
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.0e-69 265.4 213 67.1
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 6.5e-69 265.0 155 86.5
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.2e-68 262.7 173 75.7
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 3.6e-67 259.2 142 86.6
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 8.0e-67 258.1 156 80.8
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 5.9e-62 241.9 148 80.4
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 2.0e-54 216.9 141 78.0
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 7.8e-54 214.9 190 55.8
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.6e-52 208.8 151 71.5
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 1.1e-42 177.9 167 59.3
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 4.9e-40 169.1 93 87.1
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 6.4e-32 142.1 76 92.1
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 1.9e-28 130.6 129 55.8
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 2.5e-28 130.2 90 80.0
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 4.0e-26 122.9 71 81.7
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 1.7e-24 117.5 93 63.4
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 1.5e-17 94.4 60 71.7
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 4.5e-17 92.8 60 70.0
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 2.2e-16 90.5 46 84.8
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 3.5e-14 83.2 50 74.0
C09p15390 Brassica napus HOM05D013073 ORTHO05D014961 2.4e-07 60.5 93 39.8


User provided reference genes

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