Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 2.0e-242 842.0 432 100.0
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 1.8e-214 749.2 432 88.7
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.1e-171 607.1 441 76.0
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 1.4e-123 447.2 451 58.8
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 7.1e-99 365.2 454 49.6
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 2.5e-96 356.7 463 50.5
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 5.7e-96 355.5 456 50.7
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 5.7e-96 355.5 464 48.5
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 2.4e-94 350.1 450 50.0
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 9.0e-94 348.2 450 49.1
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 2.0e-93 347.1 449 49.7
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 4.5e-93 345.9 461 49.2
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 7.7e-93 345.1 451 48.8
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 1.0e-92 344.7 460 48.7
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 5.5e-91 339.0 454 48.9
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 2.1e-90 337.0 464 49.1
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 2.7e-90 336.7 450 47.8
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 2.0e-88 330.5 454 48.7
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 3.3e-88 329.7 441 46.7
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 1.7e-87 327.4 446 50.4
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.7e-87 327.4 459 47.7
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 2.2e-87 327.0 452 47.3
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 3.7e-87 326.2 457 47.5
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 3.7e-87 326.2 450 47.8
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.4e-86 324.3 455 48.1
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 4.5e-85 319.3 441 46.0
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 5.9e-85 318.9 461 45.8
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.3e-84 317.8 459 44.2
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 1.4e-83 314.3 452 46.9
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 9.4e-83 311.6 449 45.4
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.3e-81 307.0 450 46.7
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 6.7e-81 305.4 468 46.6
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 4.4e-80 302.8 453 45.5
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 7.4e-80 302.0 451 45.5
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 6.3e-79 298.9 450 45.1
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.3e-76 291.2 453 45.3
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 6.5e-76 288.9 461 42.3
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 5.5e-75 285.8 397 48.9
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 9.4e-75 285.0 452 44.0
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 6.7e-73 278.9 440 42.7
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 1.5e-72 277.7 455 44.6
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 4.1e-70 269.6 441 42.2
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 1.7e-68 264.2 445 43.6
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 2.2e-68 263.8 448 45.1
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 1.1e-67 261.5 442 42.3
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 1.5e-67 261.2 448 44.9
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 2.7e-66 256.9 463 42.5
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 2.3e-65 253.8 450 42.9
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 3.0e-65 253.4 445 42.9
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 5.2e-65 252.7 448 43.5
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 2.0e-64 250.8 423 41.4
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 4.4e-64 249.6 443 41.1
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 7.5e-64 248.8 451 41.0
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 7.5e-64 248.8 442 40.7
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 7.5e-64 248.8 443 42.7
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 2.2e-63 247.3 444 41.2
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 1.2e-61 241.5 459 40.7
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 1.2e-61 241.5 466 38.4
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 2.0e-61 240.7 451 40.8
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 2.7e-61 240.4 447 40.0
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 5.9e-61 239.2 451 39.2
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 7.7e-61 238.8 456 40.1
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 2.9e-60 236.9 457 41.1
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 1.1e-59 235.0 455 41.1
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 7.2e-59 232.3 496 37.9
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 7.2e-59 232.3 493 37.5
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 1.6e-58 231.1 458 38.9
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 8.0e-58 228.8 449 39.9
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.0e-57 228.4 451 38.1
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 2.3e-57 227.3 454 38.8
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 8.8e-57 225.3 462 37.7
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 1.2e-56 224.9 447 41.8
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 2.6e-56 223.8 447 37.8
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 4.4e-56 223.0 441 36.3
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 1.3e-55 221.5 460 39.8
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 6.3e-55 219.2 445 38.7
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 8.3e-55 218.8 441 38.8
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.1e-54 218.4 494 36.4
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 1.1e-54 218.4 485 38.6
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.4e-54 218.0 366 42.3
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 2.4e-54 217.2 506 36.8
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 3.1e-54 216.9 466 38.4
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 7.0e-54 215.7 451 38.8
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 4.5e-53 213.0 440 38.0
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 7.7e-53 212.2 456 38.2
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 2.3e-52 210.7 438 39.3
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 2.3e-52 210.7 473 37.2
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 5.0e-52 209.5 438 39.0
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 8.6e-52 208.8 466 36.5
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 1.1e-51 208.4 444 39.2
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 5.5e-51 206.1 442 36.0
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 1.2e-50 204.9 447 36.7
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 1.2e-50 204.9 442 36.9
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 1.2e-50 204.9 444 39.2
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 1.6e-50 204.5 442 36.0
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 3.6e-50 203.4 390 39.0
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 3.6e-50 203.4 442 37.3
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 1.0e-49 201.8 434 36.6
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 1.5e-48 198.0 457 37.2
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 2.0e-48 197.6 455 37.1
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 3.4e-48 196.8 471 36.9
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.3e-47 194.9 453 37.3
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.3e-47 194.9 450 36.4
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 1.7e-47 194.5 457 37.2
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 1.4e-46 191.4 429 35.9
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 3.2e-46 190.3 441 35.8
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 7.0e-46 189.1 440 35.7
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 1.2e-45 188.3 442 36.9
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 1.6e-45 188.0 440 34.8
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 2.0e-45 187.6 445 38.0
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 3.5e-45 186.8 440 35.5
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 1.9e-43 181.0 438 34.9
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 9.5e-43 178.7 446 35.0
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 1.6e-42 177.9 325 39.7
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 2.8e-42 177.2 454 35.7
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 6.2e-42 176.0 446 35.4
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 1.4e-41 174.9 456 32.0
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 2.3e-41 174.1 461 35.4
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 2.0e-40 171.0 433 34.6
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 2.6e-40 170.6 466 34.5
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 3.4e-40 170.2 296 41.9
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 4.4e-40 169.9 413 35.4
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 7.5e-40 169.1 447 34.7
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 1.7e-39 167.9 462 35.9
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 2.2e-39 167.5 280 42.9
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 3.7e-39 166.8 411 33.6
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 4.9e-39 166.4 442 35.7
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 6.4e-39 166.0 437 34.1
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 6.4e-39 166.0 435 34.9
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 1.9e-38 164.5 441 33.8
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 3.2e-38 163.7 433 33.5
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 9.2e-38 162.2 446 33.2
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 3.5e-37 160.2 440 33.9
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 1.7e-36 157.9 451 34.6
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.3e-36 157.5 455 36.5
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 4.3e-35 153.3 445 33.0
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 5.6e-35 152.9 441 32.9
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 7.3e-35 152.5 445 33.0
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 6.8e-33 146.0 442 32.8
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.5e-32 144.8 290 37.2
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.6e-32 144.1 443 32.1
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 5.8e-32 142.9 438 32.9
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.7e-31 141.4 319 37.0
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.9e-30 137.9 438 32.4
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 7.1e-30 136.0 443 34.1
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 6.0e-29 132.9 439 31.0
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 6.6e-28 129.4 431 31.1
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 8.6e-28 129.0 444 32.9
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 2.5e-27 127.5 380 35.8
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 1.2e-26 125.2 431 30.6
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 1.6e-26 124.8 463 30.7
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 3.6e-26 123.6 460 31.5
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 1.1e-25 122.1 449 29.8
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 1.2e-24 118.6 371 32.9
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 1.5e-24 118.2 457 31.7
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 3.4e-24 117.1 427 30.9
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 3.4e-24 117.1 462 29.2
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 5.8e-24 116.3 382 31.2
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 9.9e-24 115.5 445 31.0
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 1.1e-22 112.1 385 33.0
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 3.2e-22 110.5 444 29.7
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 4.1e-22 110.2 432 31.0
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 1.6e-21 108.2 334 32.6
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.1e-21 107.8 384 30.5
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 3.5e-21 107.1 449 29.4
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 5.1e-20 103.2 266 37.2
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 2.8e-18 97.4 430 28.4
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 2.6e-16 90.9 365 27.1
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 9.9e-16 89.0 171 39.8
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 8.4e-15 85.9 179 41.3
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 3.2e-14 84.0 201 38.8
Hma1.2p1_0421F.1_g149960 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 2.1e-13 81.3 97 43.3
CARHR199410 Cardamine hirsuta HOM05D003379 ORTHO05D003862 5.1e-12 76.6 127 41.7
A05p12750 Brassica napus HOM05D003379 ORTHO05D003862 3.3e-11 73.9 115 41.7
RcHm_v2.0_Chr2g0176501 Rosa chinensis HOM05D003379 ORTHO05D003862 3.3e-11 73.9 149 39.6
Cpa.g.sc38.89 Carica papaya HOM05D003379 ORTHO05D003862 1.6e-10 71.6 175 33.7
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 1.6e-10 71.6 433 27.0
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 6.2e-10 69.7 70 51.4
BolC3t18480H Brassica oleracea HOM05D003379 ORTHO05D003862 8.1e-10 69.3 70 51.4
C03p62180 Brassica napus HOM05D003379 ORTHO05D003862 2.4e-09 67.8 70 50.0
FAN14G0132 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.1e-09 67.4 448 25.0
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 6.9e-09 66.2 477 25.2
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 2.0e-08 64.7 206 35.4
BraA05t20213Z Brassica rapa HOM05D003379 ORTHO05D003862 2.0e-08 64.7 85 43.5
AagrBONN_evm.TU.Sc2ySwM_369.605 Anthoceros agrestis HOM05D003379 ORTHO05D003862 3.2e-06 57.4 333 25.5
BcaC09g48308 Brassica carinata HOM05D003379 ORTHO05D003862 9.3e-06 55.8 80 45.0


User provided reference genes

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