Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 7.6e-88 327.4 199 100.0
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 1.2e-64 250.4 196 73.5
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 1.0e-60 237.3 198 68.7
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 1.5e-56 223.4 204 69.6
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 1.5e-56 223.4 195 66.7
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 3.8e-55 218.8 190 69.5
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 6.5e-55 218.0 189 68.8
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 8.5e-55 217.6 189 67.2
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 5.5e-54 214.9 200 67.5
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 1.2e-53 213.8 190 68.4
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 2.1e-53 213.0 201 66.7
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 2.7e-53 212.6 193 70.5
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 6.1e-53 211.5 201 69.2
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 3.0e-52 209.1 207 66.2
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 3.0e-52 209.1 196 64.3
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 3.0e-52 209.1 196 64.3
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 5.2e-52 208.4 196 63.8
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 6.7e-52 208.0 197 69.0
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 1.1e-51 207.2 194 65.5
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 2.6e-51 206.1 195 70.3
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 3.3e-51 205.7 196 65.8
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 4.4e-51 205.3 196 63.3
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 4.4e-51 205.3 196 67.3
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 1.7e-50 203.4 180 65.6
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 2.2e-50 203.0 198 72.7
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 4.8e-50 201.8 193 65.3
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 6.3e-50 201.4 203 65.5
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 8.2e-50 201.1 205 67.3
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.8e-49 199.9 196 64.8
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 1.8e-49 199.9 190 66.3
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 4.1e-49 198.7 203 62.6
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 7.0e-49 198.0 197 63.5
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 1.2e-48 197.2 188 69.1
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 1.6e-48 196.8 205 66.8
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 2.6e-48 196.1 191 72.3
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 2.6e-48 196.1 189 64.0
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 3.5e-48 195.7 195 68.7
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 7.7e-48 194.5 192 64.6
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 1.0e-47 194.1 190 70.0
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 1.0e-47 194.1 193 61.7
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 1.0e-47 194.1 204 69.1
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 1.3e-47 193.7 184 71.2
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 2.2e-47 193.0 199 65.3
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 2.9e-47 192.6 190 70.5
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 2.9e-47 192.6 189 66.1
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 3.8e-47 192.2 190 69.5
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 3.8e-47 192.2 194 66.0
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 8.5e-47 191.0 194 64.9
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 1.1e-46 190.7 187 66.3
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 1.5e-46 190.3 179 63.7
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 1.9e-46 189.9 193 67.9
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 2.5e-46 189.5 201 67.2
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 3.2e-46 189.1 193 63.2
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 5.5e-46 188.3 190 62.6
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 5.5e-46 188.3 197 64.0
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 5.5e-46 188.3 197 64.0
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 5.5e-46 188.3 197 64.0
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 5.5e-46 188.3 195 59.0
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 5.5e-46 188.3 196 68.9
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 9.4e-46 187.6 195 66.7
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 2.1e-45 186.4 202 61.4
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 2.7e-45 186.0 193 67.4
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 2.7e-45 186.0 193 66.3
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 3.6e-45 185.7 193 62.2
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 4.7e-45 185.3 204 60.8
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 6.1e-45 184.9 191 61.3
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 8.0e-45 184.5 186 67.2
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 1.4e-44 183.7 199 64.8
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 2.3e-44 183.0 196 62.8
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 2.3e-44 183.0 196 62.8
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 3.0e-44 182.6 192 64.6
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 4.0e-44 182.2 202 63.9
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 4.0e-44 182.2 187 69.0
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 5.2e-44 181.8 197 66.0
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 5.2e-44 181.8 197 65.0
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 6.7e-44 181.4 203 58.1
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 1.2e-43 180.6 193 68.4
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.5e-43 180.3 193 67.4
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 2.6e-43 179.5 192 65.6
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 4.4e-43 178.7 198 65.2
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 4.4e-43 178.7 186 64.0
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 4.4e-43 178.7 188 64.9
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 5.7e-43 178.3 195 67.7
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 5.7e-43 178.3 193 68.4
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 7.5e-43 177.9 203 62.6
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 7.5e-43 177.9 197 66.5
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 1.7e-42 176.8 198 64.1
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 2.2e-42 176.4 193 66.8
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 3.7e-42 175.6 197 64.5
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 6.3e-42 174.9 193 65.3
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 1.8e-41 173.3 195 66.7
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 5.3e-41 171.8 195 65.1
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 1.6e-40 170.2 195 55.9
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 2.0e-40 169.9 195 65.6
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 2.7e-40 169.5 204 58.8
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 3.5e-40 169.1 191 63.9
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 4.5e-40 168.7 201 62.7
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 5.9e-40 168.3 194 62.9
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 1.7e-39 166.8 190 64.2
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 1.7e-39 166.8 190 64.2
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 3.6e-37 159.1 200 50.0
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 1.4e-36 157.1 200 60.0
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 3.7e-34 149.1 167 56.3
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 1.2e-32 144.1 155 70.3
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 2.0e-32 143.3 197 50.8
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 2.7e-32 142.9 185 49.7
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 3.5e-32 142.5 196 43.9
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 4.5e-32 142.1 135 64.4
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 4.5e-32 142.1 185 59.5
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 6.5e-31 138.3 141 63.8
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 8.5e-31 137.9 167 52.7
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 1.9e-30 136.7 167 52.7
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 2.5e-30 136.3 135 63.0
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 4.7e-29 132.1 158 60.8
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 8.0e-29 131.3 120 60.8
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 8.0e-29 131.3 128 60.9
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 1.2e-27 127.5 128 60.2
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 2.0e-27 126.7 204 57.8
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 9.8e-27 124.4 116 57.8
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 2.8e-26 122.9 128 58.6
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 6.3e-26 121.7 119 54.6
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 7.0e-25 118.2 185 44.9
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 1.2e-24 117.5 128 58.6
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 1.0e-20 104.4 183 53.6
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 3.0e-20 102.8 99 58.6
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 8.9e-20 101.3 119 62.2
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 1.3e-18 97.4 105 74.3
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 3.2e-17 92.8 113 54.9
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 5.0e-15 85.5 126 46.8
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 1.5e-14 84.0 85 51.8
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 9.5e-14 81.3 115 67.0
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 3.4e-11 72.8 68 58.8
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 7.5e-11 71.6 79 51.9
CBR_g4589 Chara braunii HOM05D005729 ORTHO05D007026 5.4e-09 65.5 183 43.2
Atru.chr6.2684 Acer truncatum HOM05D005729 ORTHO05D007026 1.7e-07 60.5 53 56.6
FvH4_3g27021 Fragaria vesca HOM05D005729 ORTHO05D007026 3.9e-07 59.3 47 63.8
Lalb_Chr14g0364061 Lupinus albus HOM05D005729 ORTHO05D007026 4.3e-06 55.8 35 80.0


User provided reference genes

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