Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 5.3e-224 780.8 416 100.0
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 1.9e-202 709.1 416 91.3
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 7.4e-186 654.1 422 84.4
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 6.1e-180 634.4 422 81.5
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 6.1e-156 554.7 383 73.4
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 5.7e-154 548.1 389 71.7
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 1.3e-153 547.0 386 72.0
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 1.1e-152 543.9 386 72.5
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 5.4e-152 541.6 400 70.0
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 1.2e-151 540.4 391 71.9
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 7.7e-151 537.7 387 70.8
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 9.5e-149 530.8 435 68.5
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 3.6e-148 528.9 387 71.6
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 4.4e-146 521.9 401 68.1
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 4.4e-146 521.9 385 69.6
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 5.7e-146 521.5 389 69.9
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 3.7e-145 518.8 376 68.4
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 1.8e-144 516.5 400 68.2
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 7.0e-144 514.6 388 69.1
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 9.2e-144 514.2 389 68.9
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 1.6e-143 513.5 391 67.5
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 2.7e-143 512.7 392 68.6
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 1.3e-142 510.4 400 67.2
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 5.0e-142 508.4 388 68.8
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 5.0e-142 508.4 388 68.8
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 1.1e-141 507.3 395 67.8
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.5e-141 506.1 388 68.6
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.3e-141 505.4 381 69.8
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 5.6e-141 505.0 386 68.9
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 9.5e-141 504.2 393 66.7
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 9.5e-141 504.2 381 69.6
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.2e-140 503.8 388 67.3
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 2.1e-140 503.1 383 70.0
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 3.6e-140 502.3 388 67.3
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 3.6e-140 502.3 387 69.8
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 8.0e-140 501.1 392 66.1
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 8.0e-140 501.1 398 67.1
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 8.0e-140 501.1 398 67.1
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 1.0e-139 500.7 386 68.7
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 1.4e-139 500.4 391 66.2
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 6.8e-139 498.0 392 67.3
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 8.9e-139 497.7 398 66.6
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 1.2e-138 497.3 396 63.6
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.5e-138 496.9 392 66.1
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 2.0e-138 496.5 374 67.6
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 2.0e-138 496.5 392 65.8
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 3.4e-138 495.7 373 68.9
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 4.4e-138 495.4 373 68.6
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 1.3e-137 493.8 388 66.5
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 2.2e-137 493.0 372 66.9
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 2.2e-137 493.0 386 66.8
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 3.7e-137 492.3 390 64.4
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 4.9e-137 491.9 372 68.8
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 4.9e-137 491.9 374 67.1
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 4.9e-137 491.9 394 64.0
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 6.4e-137 491.5 380 68.7
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 6.4e-137 491.5 372 68.8
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 6.4e-137 491.5 372 68.8
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 6.4e-137 491.5 396 62.9
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 6.4e-137 491.5 393 63.9
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 1.9e-136 490.0 379 67.0
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 2.4e-136 489.6 373 67.0
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 3.2e-136 489.2 400 64.2
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 1.2e-135 487.3 387 67.2
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.6e-135 486.9 385 66.2
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 6.0e-135 485.0 377 65.8
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.0e-134 484.2 381 68.2
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 2.3e-134 483.0 379 66.2
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 3.0e-134 482.6 377 65.0
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.6e-132 476.9 378 65.3
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 4.7e-132 475.3 384 64.3
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 8.1e-132 474.6 397 63.5
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 1.1e-131 474.2 395 63.0
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 1.1e-131 474.2 393 64.6
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 1.5e-130 470.3 407 60.4
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 3.4e-130 469.2 399 62.2
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 1.3e-129 467.2 405 63.2
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.3e-129 467.2 383 62.7
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 2.9e-129 466.1 401 61.1
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 2.9e-129 466.1 373 64.9
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 4.9e-129 465.3 397 62.2
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 6.4e-129 464.9 408 61.3
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 4.1e-128 462.2 388 63.9
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 5.4e-128 461.8 384 62.2
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 1.6e-127 460.3 387 64.1
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 2.1e-127 459.9 412 61.7
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 2.1e-127 459.9 381 63.8
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 2.7e-127 459.5 376 63.8
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 6.0e-127 458.4 393 62.6
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 1.5e-125 453.8 389 63.0
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 5.6e-125 451.8 390 61.5
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 9.5e-125 451.1 401 60.3
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 2.8e-124 449.5 392 61.0
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 8.1e-124 448.0 380 63.4
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 2.3e-123 446.4 395 60.5
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 4.0e-123 445.7 405 59.5
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 4.0e-123 445.7 376 63.0
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 5.2e-123 445.3 376 63.0
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.2e-122 444.1 357 64.1
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 2.0e-122 443.4 390 63.3
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 2.6e-122 443.0 382 62.0
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 3.4e-122 442.6 390 63.1
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.3e-121 440.7 388 61.3
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 4.9e-121 438.7 394 59.9
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 5.4e-120 435.3 373 61.7
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 7.1e-120 434.9 365 61.4
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 1.7e-118 430.3 399 57.6
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 1.7e-118 430.3 383 59.0
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.3e-118 429.9 378 57.9
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 3.9e-118 429.1 378 57.7
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 8.6e-118 427.9 377 57.3
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 3.3e-117 426.0 385 59.5
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 7.8e-111 404.8 391 56.3
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.1e-107 394.4 378 56.6
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 4.9e-105 385.6 319 63.0
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 4.9e-105 385.6 300 66.7
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.4e-104 384.0 379 56.2
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 5.4e-104 382.1 367 54.2
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 4.3e-101 372.5 430 50.2
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 1.3e-100 370.9 372 53.8
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 4.2e-96 355.9 394 49.7
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 4.3e-85 319.3 323 54.5
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 3.7e-76 289.7 242 62.0
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 1.8e-75 287.3 426 43.2
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 1.4e-67 261.2 214 61.7
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 3.3e-61 240.0 304 44.7
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 2.4e-59 233.8 397 37.5
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 1.6e-58 231.1 231 56.3
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 3.5e-58 229.9 221 51.6
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.2e-55 221.5 204 58.3
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.7e-49 201.1 152 67.8
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 1.6e-47 194.5 197 67.5
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 2.0e-45 187.6 152 65.8
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.6e-42 177.9 148 62.8
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 1.9e-40 171.0 305 35.4
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 4.2e-40 169.9 142 62.7
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 1.8e-38 164.5 355 32.1
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.5e-13 81.6 78 50.0
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 3.4e-13 80.5 113 45.1
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.1e-11 75.5 65 58.5
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 1.1e-08 65.5 36 72.2
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 2.5e-08 64.3 165 29.1


User provided reference genes

Program Settings