Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 0.0e+00 2500.3 1326 100.0
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 0.0e+00 2286.1 1332 91.7
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 0.0e+00 1408.7 1275 59.4
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 0.0e+00 1407.5 1296 58.6
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1395.9 1292 57.6
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1393.6 1290 57.3
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 0.0e+00 1391.7 1275 58.5
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 0.0e+00 1390.6 1295 58.1
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 0.0e+00 1379.8 1298 57.3
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 0.0e+00 1373.6 1288 57.3
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 0.0e+00 1363.6 1267 57.4
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 0.0e+00 1362.1 1451 52.4
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1361.3 1267 57.3
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 0.0e+00 1359.7 1276 57.4
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1347.0 1278 56.7
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1346.3 1277 56.5
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 0.0e+00 1338.2 1317 55.0
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1336.6 1266 56.2
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 0.0e+00 1330.9 1278 56.0
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1324.7 1272 56.3
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 0.0e+00 1323.9 1042 66.6
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 0.0e+00 1317.0 1271 56.6
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 0.0e+00 1317.0 1291 55.2
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 0.0e+00 1305.4 1302 54.8
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 0.0e+00 1284.6 1133 59.3
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 0.0e+00 1269.2 1297 53.4
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 0.0e+00 1259.2 1269 53.5
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 0.0e+00 1255.4 1290 53.6
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 0.0e+00 1245.0 1302 52.9
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 0.0e+00 1241.9 1299 52.9
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 0.0e+00 1233.8 1287 51.5
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 0.0e+00 1229.5 1152 57.3
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1228.8 1165 56.1
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 0.0e+00 1228.8 1162 57.1
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 0.0e+00 1226.1 1276 52.0
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1216.8 1268 51.8
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1201.8 1268 52.5
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 0.0e+00 1196.8 1058 58.7
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 0.0e+00 1193.3 1274 52.1
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 0.0e+00 1187.9 1276 51.9
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 0.0e+00 1187.2 1301 52.4
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 0.0e+00 1186.4 1274 52.3
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 0.0e+00 1182.2 1308 51.1
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 0.0e+00 1179.9 1264 51.7
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 0.0e+00 1179.9 1272 51.2
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 0.0e+00 1171.4 1304 49.5
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 0.0e+00 1169.5 1275 49.6
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 0.0e+00 1159.1 1298 49.1
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 0.0e+00 1155.6 1299 48.9
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1154.8 1285 50.3
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 0.0e+00 1151.7 1269 50.5
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 0.0e+00 1147.9 1340 48.6
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 0.0e+00 1146.3 1270 48.9
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1140.2 1281 50.6
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 0.0e+00 1140.2 1299 48.7
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1132.9 1269 49.3
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 0.0e+00 1129.4 1275 48.9
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 0.0e+00 1129.0 1193 52.2
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 1124.0 1306 47.9
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 0.0e+00 1120.9 1295 48.2
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 0.0e+00 1117.1 1132 53.2
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 1112.1 1308 47.6
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 1109.4 1305 47.7
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 0.0e+00 1109.4 1305 47.7
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 1103.2 1306 47.1
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 0.0e+00 1103.2 1318 46.6
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 0.0e+00 1098.6 1302 48.4
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 0.0e+00 1087.8 1345 46.4
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 0.0e+00 1086.2 1274 47.5
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 1.9e-307 1059.7 1301 46.4
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 1.2e-306 1057.0 1275 47.5
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 1.2e-306 1057.0 1154 50.0
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 9.0e-302 1040.8 1120 49.1
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 5.8e-301 1038.1 1276 46.9
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 9.9e-301 1037.3 866 63.0
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 2.9e-300 1035.8 1106 50.8
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 8.4e-300 1034.2 1216 46.5
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 3.1e-294 1015.8 1071 52.8
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 9.0e-294 1014.2 1269 45.3
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 3.9e-289 998.8 1283 45.0
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 2.8e-287 992.6 1283 44.7
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 5.8e-285 984.9 1273 45.3
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 3.5e-282 975.7 1207 45.6
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 1.8e-281 973.4 949 56.0
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 1.8e-278 963.4 1247 45.0
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 2.4e-262 909.8 757 61.8
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 5.3e-254 882.1 1117 44.0
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 1.5e-251 874.0 982 50.2
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 3.7e-247 859.4 1218 43.2
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 7.5e-240 835.1 843 51.8
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 3.2e-230 803.1 1151 41.2
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 1.4e-225 787.7 796 51.3
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 4.7e-218 762.7 769 54.4
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 2.1e-205 720.7 1012 39.9
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 1.1e-201 708.4 1332 35.4
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 8.4e-175 619.0 1024 38.7
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 2.5e-163 580.9 667 50.2
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 5.7e-163 579.7 718 47.2
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 1.1e-158 565.5 585 52.6
CARHR220220 Cardamine hirsuta HOM05D005651 ORTHO05D006877 4.4e-147 526.9 651 45.2
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 2.5e-142 511.1 1235 30.8
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 9.8e-123 446.0 469 55.9
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 2.2e-122 444.9 477 53.7
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 1.7e-103 382.1 491 48.3
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 2.5e-102 378.3 610 41.0
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 2.8e-101 374.8 384 57.3
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 3.7e-98 364.4 1263 26.7
PGSC0003DMG400024589 Solanum tuberosum HOM05D005651 ORTHO05D006877 1.2e-93 349.4 356 50.0
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 5.2e-92 344.0 1321 24.8
Psat2g094280 Pisum sativum HOM05D005651 ORTHO05D006877 8.9e-84 316.6 378 46.3
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 2.2e-82 312.0 382 42.1
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 4.6e-80 304.3 465 41.9
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 9.0e-76 290.0 377 43.8
Nitab4.5_0009569g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 5.5e-57 227.6 285 43.5
Psat0s1368g0040 Pisum sativum HOM05D005651 ORTHO05D006877 1.4e-44 186.4 192 52.6
CSS0048714 Camellia sinensis var. sinensis HOM05D005651 ORTHO05D006877 2.2e-37 162.5 139 64.0
vmacro15591 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 1.1e-33 150.2 184 49.5
SHI01039 Sapria himalayana HOM05D005651 ORTHO05D006877 6.3e-29 134.4 156 55.8
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 4.5e-27 128.3 116 58.6
FAN22G0619 Fragaria x ananassa HOM05D005651 ORTHO05D006877 2.2e-26 125.9 120 60.0
unitig_748.g8007 Utricularia gibba HOM05D005651 ORTHO05D006877 1.4e-23 116.7 211 33.2
Lalb_Chr24g0394541 Lupinus albus HOM05D005651 ORTHO05D006877 2.6e-22 112.5 143 48.3
CBR_g39378 Chara braunii HOM05D005651 ORTHO05D006877 1.8e-20 106.3 504 21.4
Lj5P691T0 Lonicera japonica HOM05D005651 ORTHO05D006877 1.6e-19 103.2 117 50.4
Ah.04g149630 Amaranthus hybridus HOM05D005651 ORTHO05D006877 7.2e-17 94.4 108 48.1
TAR633G2085 Trochodendron aralioides HOM05D005651 ORTHO05D006877 2.7e-16 92.4 115 45.2
BcaB01g02718 Brassica carinata HOM05D005651 ORTHO05D006877 3.0e-15 89.0 115 47.8
BraA03t12111Z Brassica rapa HOM05D005651 ORTHO05D006877 4.0e-15 88.6 131 44.3
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 5.2e-15 88.2 134 38.8
SHI01042 Sapria himalayana HOM05D005651 ORTHO05D006877 1.6e-11 76.6 68 58.8
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 2.0e-11 76.3 65 58.5


User provided reference genes

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