Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 5.4e-295 1016.9 519 100.0
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 6.7e-261 903.7 538 87.9
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 1.5e-135 487.3 553 53.5
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 8.0e-129 464.9 517 51.6
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 1.4e-128 464.2 516 51.7
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 9.1e-125 451.4 518 51.5
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 2.7e-121 439.9 527 50.3
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 5.2e-120 435.6 529 48.8
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 3.0e-112 409.8 461 49.7
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 5.2e-112 409.1 551 47.0
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 8.3e-110 401.7 526 45.8
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 3.1e-109 399.8 514 47.5
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.3e-102 377.9 516 45.3
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 2.4e-101 373.6 512 45.1
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 4.6e-100 369.4 653 38.6
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 3.0e-99 366.7 518 45.0
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 4.4e-95 352.8 523 43.8
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 5.4e-93 345.9 462 45.2
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.7e-91 340.9 653 38.3
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 3.0e-91 340.1 512 43.6
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 6.6e-91 339.0 671 37.1
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 8.6e-91 338.6 624 37.2
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 1.2e-87 328.2 520 41.2
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 4.6e-84 316.2 655 36.0
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 6.0e-84 315.8 526 41.4
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 3.0e-83 313.5 517 41.2
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.9e-83 313.2 654 36.4
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 8.6e-83 312.0 515 40.8
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 1.9e-82 310.8 513 40.7
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 2.1e-81 307.4 654 36.2
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 3.1e-80 303.5 526 40.9
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 6.8e-80 302.4 520 40.2
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 3.4e-79 300.1 497 40.4
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 1.3e-78 298.1 477 41.1
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 8.4e-78 295.4 654 35.3
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.4e-77 294.7 651 35.0
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.9e-77 294.3 654 35.5
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 7.1e-77 292.4 416 45.2
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 1.6e-73 281.2 437 41.9
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 4.0e-72 276.6 499 38.5
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 5.2e-72 276.2 432 42.6
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 1.2e-71 275.0 615 35.0
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 2.0e-71 274.2 553 36.9
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 2.6e-71 273.9 442 40.3
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 8.4e-70 268.9 481 39.3
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 1.9e-69 267.7 833 30.1
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 2.4e-69 267.3 481 39.1
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 1.2e-68 265.0 595 34.1
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 2.7e-68 263.8 594 33.5
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 3.5e-68 263.5 241 58.9
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 1.0e-67 261.9 462 39.4
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 6.6e-67 259.2 595 33.1
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 5.6e-66 256.1 749 31.8
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 1.3e-65 255.0 470 38.9
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 2.4e-64 250.8 505 38.0
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 2.4e-64 250.8 428 43.2
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 2.0e-63 247.7 632 32.3
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 9.9e-63 245.4 597 32.7
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 3.2e-61 240.4 683 31.5
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 3.2e-61 240.4 518 38.4
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 2.1e-60 237.7 305 47.5
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 4.6e-60 236.5 305 46.9
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 5.6e-58 229.6 583 32.2
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 5.6e-58 229.6 528 35.2
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 7.4e-58 229.2 696 31.3
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 2.4e-56 224.2 406 40.4
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 9.0e-56 222.2 394 36.5
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 3.4e-55 220.3 600 32.0
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 5.8e-55 219.5 878 27.6
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 1.3e-54 218.4 723 28.6
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 2.2e-54 217.6 494 34.2
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 3.2e-53 213.8 511 34.4
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 5.5e-53 213.0 728 28.2
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 7.1e-53 212.6 444 34.5
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 1.6e-52 211.5 576 33.3
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 7.9e-52 209.1 678 29.9
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 1.3e-51 208.4 607 30.0
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 1.8e-51 208.0 512 34.4
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 8.7e-51 205.7 712 29.4
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 5.6e-50 203.0 401 40.6
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 9.6e-50 202.2 712 29.2
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 9.6e-50 202.2 311 41.8
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 1.3e-49 201.8 712 29.6
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 2.8e-49 200.7 289 46.0
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 3.1e-48 197.2 712 29.5
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 4.0e-48 196.8 726 28.5
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 5.3e-48 196.4 481 36.0
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 5.3e-48 196.4 278 40.6
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 2.6e-47 194.1 606 29.0
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 4.5e-47 193.4 717 29.4
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 1.7e-46 191.4 730 27.9
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 2.9e-46 190.7 229 41.9
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 3.2e-45 187.2 717 28.7
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 5.5e-45 186.4 695 30.2
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 9.3e-45 185.7 737 27.5
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 2.1e-44 184.5 717 28.7
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 4.6e-44 183.3 695 30.1
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 6.0e-44 183.0 733 26.7
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 7.9e-44 182.6 549 29.9
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 1.4e-40 171.8 765 26.7
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 1.3e-38 165.2 735 27.2
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 2.9e-38 164.1 552 28.8
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 3.2e-37 160.6 238 40.8
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 1.8e-35 154.8 386 33.4
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 1.5e-34 151.8 426 30.3
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 5.7e-34 149.8 313 34.5
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.6e-33 148.3 336 33.9
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 1.8e-32 144.8 252 37.7
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 5.3e-32 143.3 443 30.5
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 2.0e-31 141.4 372 34.9
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 7.7e-31 139.4 386 31.9
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 1.3e-30 138.7 381 31.0
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 1.7e-30 138.3 171 51.5
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 3.8e-30 137.1 340 33.5
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.9e-29 134.8 340 33.2
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 1.9e-29 134.8 287 35.9
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 4.2e-29 133.7 328 34.5
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 2.7e-28 131.0 113 57.5
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 6.1e-28 129.8 153 45.8
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 2.8e-25 120.9 527 27.7
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.1e-24 119.0 366 31.7
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.1e-24 119.0 366 31.7
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 1.2e-23 115.5 525 28.2
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 4.7e-20 103.6 287 31.0
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 7.9e-20 102.8 246 31.7
ATR0580G041 Amborella trichopoda HOM05D005385 ORTHO05D006768 5.2e-19 100.1 506 26.1
Lj1A781G48 Lonicera japonica HOM05D005385 ORTHO05D006768 1.5e-13 82.0 108 44.4
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 1.9e-13 81.6 109 41.3
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 9.4e-13 79.3 108 47.2
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 1.8e-08 65.1 98 41.8
Nitab4.5_0004549g0040 Nicotiana tabacum HOM05D005385 ORTHO05D006768 2.2e-06 58.2 91 44.0


User provided reference genes

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