Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 0.0e+00 1456.4 760 100.0
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 0.0e+00 1114.4 761 75.7
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 0.0e+00 1103.6 762 75.1
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 2.3e-310 1068.5 767 71.7
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 5.9e-306 1053.9 761 71.9
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 3.6e-303 1044.6 778 69.4
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 5.1e-302 1040.8 764 70.3
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 2.9e-297 1025.0 763 70.6
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 6.5e-297 1023.8 747 71.4
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 8.5e-297 1023.5 762 68.5
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 3.3e-293 1011.5 729 72.4
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 2.9e-289 998.4 758 68.9
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 1.5e-288 996.1 767 68.3
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 2.5e-288 995.3 765 68.6
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 1.2e-287 993.0 766 67.8
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 1.2e-287 993.0 764 67.5
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 1.6e-287 992.6 759 68.4
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.2e-285 986.5 758 68.2
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 5.7e-285 984.2 759 66.7
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 2.8e-284 981.9 758 67.5
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 3.5e-282 974.9 775 66.3
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 1.3e-281 973.0 764 65.7
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 2.9e-281 971.8 759 67.6
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 3.8e-281 971.5 757 65.8
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 1.5e-280 969.5 759 65.7
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 1.9e-280 969.1 761 64.9
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 5.5e-280 967.6 761 65.3
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 5.5e-280 967.6 758 66.8
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 1.2e-279 966.5 765 65.5
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 1.2e-279 966.5 716 69.8
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 1.4e-278 963.0 761 65.0
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 1.5e-277 959.5 762 66.1
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 1.3e-276 956.4 759 66.3
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.3e-276 956.4 770 65.6
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 8.3e-276 953.7 764 65.7
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 2.0e-274 949.1 761 64.9
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 4.5e-274 948.0 761 65.3
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 5.0e-273 944.5 804 63.4
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 1.1e-272 943.3 758 64.8
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 3.3e-272 941.8 760 66.8
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 1.6e-271 939.5 759 65.5
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 1.0e-270 936.8 761 63.9
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 5.2e-270 934.5 766 63.4
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 8.9e-270 933.7 761 63.9
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 1.4e-267 926.4 734 65.7
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 1.8e-267 926.0 759 63.0
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 1.6e-266 922.9 784 62.0
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 5.9e-266 921.0 772 62.8
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 1.0e-265 920.2 774 62.3
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 1.3e-265 919.8 759 62.6
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 2.3e-265 919.1 784 62.0
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 3.9e-265 918.3 758 63.1
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 8.6e-265 917.1 761 63.6
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 5.6e-264 914.4 768 61.2
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 3.1e-262 908.7 790 61.4
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 9.8e-261 903.7 770 62.1
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 1.3e-260 903.3 779 61.5
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 2.9e-260 902.1 502 93.4
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 4.6e-258 894.8 779 61.5
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 1.7e-257 892.9 757 59.3
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 3.0e-257 892.1 733 63.2
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 1.1e-256 890.2 771 60.1
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 2.1e-255 885.9 762 62.1
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 1.5e-253 879.8 757 58.3
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 3.7e-252 875.2 766 59.3
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 4.9e-252 874.8 765 59.5
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 1.2e-250 870.2 763 59.1
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 1.0e-249 867.1 763 58.5
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 1.3e-249 866.7 686 65.7
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 1.7e-249 866.3 763 59.4
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 3.9e-249 865.1 771 58.2
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 1.1e-248 863.6 762 61.0
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 1.1e-246 857.1 762 59.8
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 1.5e-245 853.2 763 59.0
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 8.4e-244 847.4 728 61.5
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 5.4e-243 844.7 785 56.3
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 1.2e-242 843.6 728 61.5
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 1.9e-240 836.3 762 59.1
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 3.4e-237 825.5 767 57.4
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 3.5e-234 815.5 578 72.5
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 1.9e-232 809.7 731 59.4
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 2.5e-232 809.3 807 53.5
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 4.0e-230 802.0 577 70.5
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 3.8e-228 795.4 738 60.7
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.6e-226 790.0 765 55.0
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 2.3e-225 786.2 705 61.4
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 1.9e-224 783.1 734 59.8
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 4.9e-220 768.5 766 53.7
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 6.4e-220 768.1 567 70.4
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 3.7e-215 752.3 760 53.2
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 4.8e-215 751.9 570 68.6
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 1.8e-214 750.0 764 55.4
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 5.3e-214 748.4 760 52.8
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 1.5e-213 746.9 570 68.1
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 2.0e-213 746.5 570 68.6
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 2.5e-208 729.6 570 66.5
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 1.1e-206 724.2 642 59.0
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 9.0e-206 721.1 659 57.5
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 4.2e-203 712.2 578 63.3
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 9.3e-203 711.1 574 63.1
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.9e-200 703.4 764 51.8
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 9.7e-200 701.0 517 70.2
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 4.1e-198 695.7 747 51.9
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 9.4e-187 657.9 529 63.1
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 7.9e-186 654.8 457 72.6
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.9e-179 633.6 527 64.5
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 2.0e-176 623.6 764 47.3
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 3.4e-160 569.7 616 51.6
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 2.8e-159 566.6 780 42.3
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.4e-158 564.3 525 56.2
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 3.0e-140 503.4 434 58.8
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 2.2e-135 487.3 333 73.9
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 7.3e-131 472.2 533 52.9
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 3.8e-127 459.9 487 52.0
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 5.1e-124 449.5 326 71.5
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 8.1e-114 415.6 287 71.4
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 5.3e-113 412.9 385 59.0
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 9.9e-112 408.7 284 73.6
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 7.4e-107 392.5 817 31.6
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 3.5e-101 373.6 479 46.3
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 4.5e-96 356.7 284 65.1
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 3.8e-95 353.6 284 67.6
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 4.6e-93 346.7 737 30.7
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 1.6e-90 338.2 229 76.0
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 1.2e-80 305.4 769 28.5
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 2.3e-76 291.2 177 81.4
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 2.6e-72 277.7 346 42.2
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 2.0e-67 261.5 204 65.2
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 2.2e-66 258.1 227 60.8
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 5.0e-63 246.9 752 26.6
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 6.3e-58 229.9 219 54.3
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 4.4e-51 207.2 240 49.6
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.8e-50 204.5 418 35.4
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.8e-49 201.8 418 35.2
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 4.2e-46 190.7 236 46.6
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 1.8e-44 185.3 141 68.1
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 4.1e-41 174.1 183 49.2
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 1.2e-29 136.0 108 71.3
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 9.2e-25 119.8 88 68.2
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.5e-24 117.9 244 35.2
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 5.0e-23 114.0 85 64.7
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 6.6e-23 113.6 291 29.6
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 7.3e-22 110.2 80 68.8
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 6.2e-21 107.1 76 71.1
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 2.2e-18 98.6 143 43.4
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.6e-16 92.4 68 67.6
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 6.2e-13 80.5 87 41.4
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 1.4e-09 69.3 109 42.2
SHI10093 Sapria himalayana HOM05D004734 ORTHO05D006019 2.1e-08 65.5 72 45.8


User provided reference genes

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