Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 7.0e-56 220.3 107 100.0
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 9.9e-50 199.9 108 91.7
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 3.2e-48 194.9 108 90.7
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 1.1e-37 159.8 114 74.6
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 2.4e-35 152.1 113 73.5
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 2.4e-35 152.1 113 73.5
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 5.2e-35 151.0 107 67.3
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 5.8e-34 147.5 108 64.8
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 1.7e-33 146.0 109 66.1
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 2.2e-33 145.6 112 64.3
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 2.9e-33 145.2 111 63.1
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 2.9e-33 145.2 112 64.3
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 1.9e-32 142.5 108 66.7
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 9.3e-32 140.2 110 60.9
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 2.7e-31 138.7 110 59.1
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 4.6e-31 137.9 108 63.9
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 4.6e-31 137.9 108 61.1
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 7.8e-31 137.1 122 58.2
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 3.3e-29 131.7 110 58.2
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 3.3e-29 131.7 108 59.3
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 7.3e-29 130.6 119 59.7
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 2.8e-28 128.6 110 57.3
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.8e-28 128.6 109 58.7
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.8e-28 128.6 109 58.7
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.8e-28 128.6 109 58.7
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 4.8e-28 127.9 108 56.5
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 6.2e-28 127.5 108 59.3
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 6.2e-28 127.5 108 56.5
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 8.1e-28 127.1 110 58.2
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 8.1e-28 127.1 110 58.2
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 8.1e-28 127.1 110 57.3
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 8.1e-28 127.1 109 57.8
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 8.1e-28 127.1 110 60.9
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 1.8e-27 125.9 105 58.1
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.4e-27 125.6 110 61.8
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 3.1e-27 125.2 112 57.1
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 3.1e-27 125.2 112 57.1
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 4.0e-27 124.8 106 61.3
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 6.9e-27 124.0 107 61.7
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 6.9e-27 124.0 107 61.7
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 9.0e-27 123.6 96 60.4
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 5.8e-26 120.9 107 54.2
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 7.6e-26 120.6 108 57.4
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 7.6e-26 120.6 108 57.4
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 7.6e-26 120.6 105 56.2
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 9.9e-26 120.2 109 56.9
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 9.9e-26 120.2 109 57.8
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 9.9e-26 120.2 107 56.1
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.3e-25 119.8 104 56.7
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 2.2e-25 119.0 102 55.9
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 2.2e-25 119.0 108 59.3
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.2e-25 119.0 109 56.9
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 2.2e-25 119.0 112 53.6
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 2.9e-25 118.6 108 59.3
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 2.9e-25 118.6 108 55.6
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 6.4e-25 117.5 105 56.2
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 8.4e-25 117.1 110 55.5
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 1.9e-24 115.9 126 54.8
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.4e-24 115.5 111 55.9
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 2.4e-24 115.5 109 56.9
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 3.2e-24 115.2 112 51.8
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 4.2e-24 114.8 104 56.7
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 4.2e-24 114.8 110 53.6
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 1.2e-23 113.2 99 56.6
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.6e-23 112.8 110 53.6
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 3.5e-23 111.7 110 50.0
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 3.5e-23 111.7 106 54.7
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 6.0e-23 110.9 98 55.1
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 6.0e-23 110.9 108 50.0
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 6.0e-23 110.9 97 56.7
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 1.0e-22 110.2 108 54.6
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 2.3e-22 109.0 105 57.1
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 5.1e-22 107.8 97 57.7
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 5.1e-22 107.8 86 60.5
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 5.1e-22 107.8 123 51.2
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 5.1e-22 107.8 115 55.7
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 1.1e-21 106.7 106 54.7
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 1.5e-21 106.3 97 61.9
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 3.3e-21 105.1 112 50.9
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.3e-21 105.1 105 51.4
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 3.3e-21 105.1 111 55.9
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 4.3e-21 104.8 101 54.5
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 5.6e-21 104.4 116 50.9
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 7.4e-21 104.0 107 51.4
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 7.4e-21 104.0 116 50.9
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 2.1e-20 102.4 114 49.1
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 4.8e-20 101.3 97 53.6
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 6.2e-20 100.9 101 52.5
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 6.2e-20 100.9 104 49.0
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 6.2e-20 100.9 104 52.9
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 6.2e-20 100.9 95 52.6
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 6.2e-20 100.9 109 50.5
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 8.1e-20 100.5 109 53.2
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 1.8e-19 99.4 93 58.1
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 3.1e-19 98.6 108 50.9
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 3.1e-19 98.6 91 52.7
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 4.0e-19 98.2 107 47.7
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 4.0e-19 98.2 90 52.2
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 6.9e-19 97.4 108 50.9
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 6.9e-19 97.4 108 50.9
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 2.0e-18 95.9 108 50.0
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 2.6e-18 95.5 94 51.1
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 3.4e-18 95.1 108 50.0
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 4.5e-18 94.7 114 47.4
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 5.8e-18 94.4 108 49.1
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 5.8e-18 94.4 110 44.5
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 5.8e-18 94.4 112 47.3
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 9.9e-18 93.6 112 45.5
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.3e-17 93.2 111 47.7
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 2.9e-17 92.0 99 50.5
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 6.4e-17 90.9 101 44.6
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 6.4e-17 90.9 116 47.4
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 1.9e-16 89.4 108 48.1
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 4.2e-16 88.2 109 46.8
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 4.2e-16 88.2 116 44.8
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 2.1e-15 85.9 111 45.0
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 3.5e-15 85.1 98 44.9
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 4.6e-15 84.7 93 46.2
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 7.9e-15 84.0 107 43.9
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 7.9e-15 84.0 99 45.5
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 1.0e-14 83.6 107 43.9
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 1.0e-14 83.6 107 43.9
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 1.0e-14 83.6 107 43.9
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 1.0e-14 83.6 107 43.9
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.0e-14 83.6 111 42.3
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.3e-14 83.2 111 45.9
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.8e-14 82.8 95 44.2
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 2.3e-14 82.4 107 43.0
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 3.0e-14 82.0 107 43.0
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 3.0e-14 82.0 99 47.5
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 5.1e-14 81.3 96 46.9
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 6.7e-14 80.9 107 42.1
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.5e-13 79.7 107 42.1
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 1.9e-13 79.3 96 45.8
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 1.6e-12 76.3 66 48.5
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 3.7e-12 75.1 95 40.0
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 3.1e-11 72.0 112 40.2
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 9.0e-11 70.5 88 43.2
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 2.0e-10 69.3 109 43.1
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 2.6e-10 68.9 97 43.3
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 2.6e-10 68.9 84 40.5
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.0e-09 67.0 93 43.0
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 2.2e-09 65.9 94 45.7
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 7.1e-08 60.8 56 50.0
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 6.0e-07 57.8 118 32.2


User provided reference genes

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