Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 2.7e-294 1014.6 515 100.0
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 3.1e-274 948.0 515 93.4
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 1.3e-253 879.4 521 86.8
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 1.1e-236 823.2 517 81.8
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 5.5e-231 804.3 517 80.7
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 1.8e-226 789.3 518 78.6
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 2.6e-225 785.4 518 78.2
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 2.2e-224 782.3 518 77.8
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 5.0e-224 781.2 518 78.6
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 3.6e-222 775.0 520 77.3
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 4.4e-220 768.1 519 77.3
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 7.4e-220 767.3 518 76.3
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 9.1e-218 760.4 512 76.0
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 1.3e-216 756.5 519 76.5
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 2.2e-216 755.7 517 76.0
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 2.2e-216 755.7 517 75.8
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 2.9e-216 755.4 518 74.9
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 1.0e-213 746.9 515 75.9
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 1.4e-213 746.5 516 74.6
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 6.7e-213 744.2 522 74.5
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 3.3e-212 741.9 512 75.0
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 2.2e-211 739.2 517 75.2
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 3.7e-211 738.4 516 75.6
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 2.2e-208 729.2 522 73.4
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 6.5e-208 727.6 517 74.1
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 1.5e-207 726.5 519 71.9
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 4.4e-204 714.9 517 72.0
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 1.3e-203 713.4 517 72.9
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 2.2e-203 712.6 518 70.5
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 4.8e-203 711.4 516 72.1
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 1.4e-202 709.9 520 72.1
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 1.1e-199 700.3 516 70.5
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 1.5e-199 699.9 518 69.3
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 9.5e-199 697.2 526 71.3
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 6.1e-198 694.5 518 72.4
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 2.3e-197 692.6 507 70.0
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 8.9e-197 690.6 523 70.2
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 2.0e-196 689.5 536 70.9
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 3.4e-196 688.7 521 71.0
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 1.3e-195 686.8 523 69.8
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 2.2e-195 686.0 516 69.8
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 3.7e-195 685.3 508 69.9
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 1.4e-194 683.3 520 69.8
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 1.4e-194 683.3 525 69.0
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 1.8e-194 682.9 520 69.8
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 4.1e-194 681.8 519 70.3
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 7.0e-194 681.0 526 69.2
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 9.2e-194 680.6 507 70.2
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 3.5e-193 678.7 523 68.3
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 4.5e-193 678.3 519 68.2
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 5.9e-193 677.9 512 69.1
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 7.8e-193 677.6 514 71.0
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 1.0e-192 677.2 507 69.2
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 1.7e-192 676.4 519 69.2
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 1.7e-192 676.4 522 68.2
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 1.7e-192 676.4 518 69.7
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 1.7e-192 676.4 519 69.9
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 1.7e-192 676.4 517 68.7
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 3.8e-192 675.2 520 69.6
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 3.8e-192 675.2 519 70.1
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 6.6e-192 674.5 522 68.4
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.5e-191 673.3 520 69.6
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 3.3e-191 672.2 520 69.4
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 9.5e-191 670.6 513 68.4
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 9.5e-191 670.6 522 68.0
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 9.5e-191 670.6 531 67.0
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 1.2e-190 670.2 518 69.9
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 1.2e-190 670.2 520 67.9
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 2.1e-190 669.5 517 70.4
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 2.1e-190 669.5 521 68.9
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 1.8e-189 666.4 522 67.2
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 4.0e-189 665.2 514 67.7
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 2.6e-188 662.5 521 67.4
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 7.0e-186 654.4 520 66.7
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 9.2e-186 654.1 520 67.9
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 1.6e-185 653.3 509 68.0
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 2.0e-185 652.9 507 67.9
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 6.0e-185 651.4 528 65.2
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 2.3e-184 649.4 521 68.9
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 1.9e-183 646.4 508 67.7
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 4.3e-183 645.2 520 67.3
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 4.7e-182 641.7 528 66.1
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 1.4e-181 640.2 519 65.9
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 3.4e-180 635.6 525 64.4
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 4.4e-180 635.2 509 68.0
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 9.8e-180 634.0 526 65.0
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 3.7e-179 632.1 521 65.6
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 6.4e-179 631.3 507 67.9
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 8.3e-179 630.9 511 67.1
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 1.1e-178 630.6 527 65.7
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 1.4e-178 630.2 507 67.7
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 2.4e-178 629.4 521 64.3
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 5.4e-178 628.2 516 66.9
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 3.5e-177 625.5 509 67.6
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 1.1e-175 620.5 474 69.0
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 5.2e-173 611.7 522 63.4
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 2.6e-172 609.4 529 64.3
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 1.9e-170 603.2 517 63.6
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 3.2e-170 602.4 467 67.2
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 1.3e-163 580.5 535 61.3
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 2.4e-162 576.2 535 60.4
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 1.3e-160 570.5 465 64.7
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 1.1e-159 567.4 518 62.7
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 4.3e-159 565.5 529 59.5
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 8.7e-152 541.2 528 58.1
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 4.2e-146 522.3 507 59.4
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 5.1e-144 515.4 524 55.5
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 2.5e-143 513.1 524 55.7
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 1.4e-141 507.3 485 59.4
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 5.3e-141 505.4 523 54.9
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 1.8e-136 490.3 529 52.7
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 3.0e-128 463.0 521 53.7
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 2.4e-125 453.4 527 51.2
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 2.6e-124 449.9 542 49.6
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 1.1e-122 444.5 305 71.8
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 3.7e-110 402.9 294 72.4
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 1.4e-109 401.0 516 47.9
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 3.2e-98 363.2 519 46.4
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 6.1e-89 332.4 574 41.1
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 9.5e-66 255.4 284 51.8
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 4.3e-58 229.9 201 66.2
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 9.2e-53 212.2 344 41.3
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 2.8e-41 174.1 286 40.6
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 2.1e-28 131.3 99 69.7
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 4.3e-26 123.6 483 25.7
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 5.3e-24 116.7 116 52.6
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 3.8e-22 110.5 536 27.2
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 3.2e-21 107.5 77 72.7
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.2e-15 89.0 65 66.2
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 5.0e-14 83.6 63 63.5
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 5.5e-13 80.1 105 41.9
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 6.7e-11 73.2 474 24.1
Nn6g32048 Nelumbo nucifera HOM05D005917 ORTHO05D007517 1.1e-10 72.4 81 55.6
PRCOL_00002377 Prasinoderma coloniale HOM05D005917 ORTHO05D333437 2.6e-07 61.2 343 23.3


User provided reference genes

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