Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 4.9e-252 874.0 447 100.0
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 3.4e-229 798.1 447 91.3
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 6.1e-162 574.7 461 69.6
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 8.9e-161 570.9 460 68.9
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 7.5e-160 567.8 463 69.1
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 1.1e-158 563.9 463 68.9
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 2.4e-158 562.8 408 73.5
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 5.4e-158 561.6 452 67.9
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 9.2e-158 560.8 459 68.0
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 2.7e-157 559.3 461 68.1
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 3.9e-156 555.4 452 68.1
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 1.5e-155 553.5 449 67.5
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 1.5e-155 553.5 360 78.6
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 3.3e-155 552.4 405 72.1
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 7.3e-155 551.2 450 69.3
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 1.2e-154 550.4 445 67.2
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 2.8e-154 549.3 458 67.9
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 3.6e-154 548.9 463 66.7
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 1.4e-153 547.0 407 72.5
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 1.8e-153 546.6 461 67.2
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 6.8e-153 544.7 447 66.9
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 6.8e-153 544.7 454 65.4
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 1.2e-152 543.9 454 66.7
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 1.2e-152 543.9 450 67.8
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 1.5e-152 543.5 408 72.1
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 1.5e-152 543.5 358 78.2
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 5.8e-152 541.6 448 67.9
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 7.5e-152 541.2 410 70.5
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 1.3e-151 540.4 408 70.6
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 2.9e-151 539.3 458 66.4
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 6.4e-151 538.1 460 65.0
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 1.9e-150 536.6 445 67.2
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 4.1e-150 535.4 460 64.8
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 1.2e-149 533.9 458 63.8
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 2.1e-149 533.1 454 65.4
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 4.6e-149 531.9 412 69.9
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 6.0e-149 531.6 461 65.1
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 3.0e-148 529.3 404 67.8
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 1.1e-147 527.3 491 61.7
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 1.5e-147 526.9 394 69.5
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 2.5e-147 526.2 452 65.0
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 7.3e-147 524.6 447 63.5
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 1.2e-146 523.9 451 63.6
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 2.1e-146 523.1 455 63.5
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 3.6e-146 522.3 452 64.4
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 6.2e-146 521.5 449 63.9
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 1.8e-145 520.0 384 71.6
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 5.2e-145 518.5 416 65.9
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 1.5e-144 516.9 444 65.5
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 2.6e-144 516.2 418 67.0
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 9.9e-144 514.2 445 64.7
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 9.9e-144 514.2 454 62.6
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 2.2e-143 513.1 405 66.7
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 2.9e-143 512.7 454 62.1
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 3.7e-143 512.3 400 65.8
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 8.3e-143 511.1 400 67.0
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 3.2e-142 509.2 419 65.6
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 7.1e-142 508.1 406 64.8
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 2.1e-141 506.5 353 74.2
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 2.7e-141 506.1 353 73.9
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 2.7e-141 506.1 393 70.2
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 4.6e-141 505.4 410 67.6
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 6.0e-141 505.0 402 64.9
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 1.0e-140 504.2 445 60.4
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 1.0e-140 504.2 413 67.3
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 1.7e-140 503.4 483 59.0
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 8.6e-140 501.1 454 62.3
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 2.5e-139 499.6 473 61.9
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 5.6e-139 498.4 457 62.1
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 1.2e-138 497.3 409 66.7
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 1.2e-138 497.3 469 59.9
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 2.1e-138 496.5 421 62.7
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 2.8e-138 496.1 422 62.6
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 1.1e-137 494.2 403 67.0
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 1.4e-137 493.8 426 62.4
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 2.4e-137 493.0 431 61.9
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 6.8e-137 491.5 457 60.8
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 6.8e-137 491.5 444 62.2
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 2.6e-136 489.6 400 65.0
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 3.4e-136 489.2 529 54.6
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 4.4e-136 488.8 389 67.9
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 1.3e-135 487.3 471 61.4
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 8.4e-135 484.6 453 60.7
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 1.4e-134 483.8 413 64.4
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 3.2e-134 482.6 342 72.2
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 3.2e-134 482.6 386 67.1
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 6.0e-133 478.4 352 69.9
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 1.1e-131 474.2 450 60.0
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 1.1e-131 474.2 450 59.8
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 3.3e-131 472.6 349 69.9
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 3.3e-131 472.6 349 69.9
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 1.2e-128 464.2 393 65.6
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 9.3e-126 454.5 465 56.1
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 2.1e-125 453.4 334 68.9
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 4.6e-125 452.2 399 61.7
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 6.0e-125 451.8 337 68.2
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 1.7e-124 450.3 392 63.8
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 2.3e-124 449.9 355 66.8
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 6.6e-124 448.4 347 67.1
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 8.7e-124 448.0 353 67.4
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 5.6e-123 445.3 445 59.1
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 3.6e-122 442.6 452 58.0
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 2.6e-120 436.4 302 73.8
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 2.8e-114 416.4 338 65.4
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 2.1e-109 400.2 260 80.4
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 9.6e-107 391.3 273 68.9
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 2.1e-106 390.2 278 74.8
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 9.0e-105 384.8 408 52.0
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 5.1e-100 369.0 229 80.3
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 1.9e-94 350.5 300 67.7
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 1.9e-94 350.5 357 52.9
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 3.6e-93 346.3 348 51.7
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 1.7e-90 337.4 250 68.4
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 2.8e-90 336.7 244 71.7
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 7.7e-88 328.6 318 56.3
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 2.1e-85 320.5 295 56.9
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 1.5e-83 314.3 262 61.8
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 2.8e-82 310.1 205 77.6
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 5.5e-70 269.2 282 54.3
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 1.2e-69 268.1 223 67.3
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 2.1e-69 267.3 300 50.0
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 4.4e-67 259.6 277 53.8
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 2.4e-65 253.8 350 43.7
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 3.1e-65 253.4 186 68.8
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 2.2e-63 247.3 284 48.6
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 1.1e-62 245.0 210 62.4
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 1.8e-57 227.6 242 55.8
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 4.1e-49 199.9 199 56.3
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 2.9e-42 177.2 201 56.2
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 1.4e-36 158.3 296 37.8
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 5.1e-31 139.8 121 62.8
TPR.G37315 Trifolium pratense HOM05D005239 ORTHO05D006698 3.4e-27 127.1 83 73.5
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 1.7e-26 124.8 76 76.3
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 1.9e-25 121.3 85 74.1
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 9.6e-22 109.0 73 78.1
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 1.5e-19 101.7 73 74.0
CDE12G0056 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 1.7e-18 98.2 86 61.6
Cc02_g25970 Coffea canephora HOM05D005239 ORTHO05D006698 3.6e-13 80.5 100 49.0
SEGI_27712 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 9.0e-12 75.9 58 67.2
SHI13676 Sapria himalayana HOM05D005239 ORTHO05D006698 1.5e-11 75.1 85 56.5
MSTRG.17096 Avicennia marina HOM05D005239 ORTHO05D006698 1.1e-06 58.9 34 79.4


User provided reference genes

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