Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.3e-235 819.3 419 100.0
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 2.1e-180 636.0 419 78.3
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 3.7e-153 545.4 448 65.8
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 3.5e-143 512.3 420 63.1
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 2.4e-136 489.6 423 61.5
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 6.6e-134 481.5 423 58.9
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 1.1e-128 464.2 423 58.4
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 2.4e-128 463.0 423 57.4
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 7.9e-127 458.0 441 55.8
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 1.1e-123 447.6 418 58.6
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 5.5e-120 435.3 425 55.5
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 5.5e-120 435.3 436 56.9
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 7.1e-120 434.9 426 56.1
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 3.0e-118 429.5 425 55.1
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 3.9e-118 429.1 422 53.6
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 4.3e-117 425.6 437 55.6
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 3.7e-116 422.5 422 54.3
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.1e-115 421.0 442 52.0
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 3.5e-111 406.0 421 53.2
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 1.0e-110 404.4 430 52.1
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 1.9e-109 400.2 428 50.9
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 3.3e-109 399.4 428 52.6
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 5.3e-107 392.1 422 50.2
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.6e-106 389.8 428 52.8
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 4.5e-106 389.0 433 51.5
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 7.6e-106 388.3 428 52.8
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 2.9e-105 386.3 428 52.6
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 5.0e-105 385.6 360 57.5
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 8.5e-105 384.8 420 51.4
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.2e-103 380.9 423 49.9
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 1.6e-103 380.6 420 52.1
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 4.6e-103 379.0 423 49.6
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 8.7e-102 374.8 420 51.7
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 1.1e-101 374.4 349 57.6
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 1.1e-101 374.4 435 49.4
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 1.9e-101 373.6 420 51.7
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.3e-101 372.9 420 51.7
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 2.8e-100 369.8 425 51.1
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.1e-99 366.3 420 51.0
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 6.9e-99 365.2 420 51.0
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 2.2e-97 360.1 420 49.3
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 2.5e-96 356.7 397 50.4
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 9.4e-96 354.8 414 47.3
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 2.7e-95 353.2 421 49.4
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 5.1e-94 349.0 423 48.5
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 1.1e-93 347.8 419 46.8
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 2.6e-93 346.7 423 47.3
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 9.7e-93 344.7 430 46.3
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.3e-92 344.4 445 45.8
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 1.3e-92 344.4 441 45.1
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.8e-92 343.2 424 47.6
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 4.8e-92 342.4 397 50.1
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 1.2e-90 337.8 425 45.6
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 7.7e-90 335.1 418 45.0
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 2.2e-89 333.6 425 46.1
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 2.2e-89 333.6 419 44.6
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 3.8e-89 332.8 421 46.6
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 5.0e-89 332.4 396 49.5
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 5.0e-89 332.4 439 44.2
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.9e-88 330.5 421 47.7
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 3.2e-88 329.7 421 45.6
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 1.2e-87 327.8 425 45.6
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.6e-87 327.4 421 45.4
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.6e-87 327.4 421 45.4
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 2.7e-87 326.6 438 42.9
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 1.0e-86 324.7 422 44.5
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 1.4e-86 324.3 450 42.7
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 3.0e-86 323.2 420 45.0
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 8.8e-86 321.6 421 46.3
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 2.0e-85 320.5 420 44.0
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 3.3e-85 319.7 437 43.0
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 9.7e-85 318.2 331 52.6
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 9.7e-85 318.2 423 45.4
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 8.2e-84 315.1 420 44.5
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 1.4e-83 314.3 436 42.9
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 3.1e-83 313.2 439 42.8
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 3.1e-83 313.2 438 42.9
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 5.3e-83 312.4 434 44.2
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 1.6e-82 310.8 426 43.2
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 3.5e-82 309.7 438 42.5
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 4.5e-82 309.3 426 44.1
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 7.7e-82 308.5 423 45.6
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 3.8e-81 306.2 422 42.2
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 2.5e-80 303.5 440 42.7
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 4.2e-80 302.8 427 43.1
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 2.1e-79 300.4 422 42.4
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 4.7e-79 299.3 430 44.7
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 1.4e-78 297.7 437 41.4
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 1.8e-78 297.4 429 43.6
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 3.0e-78 296.6 426 41.3
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 8.8e-78 295.0 427 41.5
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 8.8e-78 295.0 424 42.5
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 2.0e-77 293.9 424 41.5
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 2.6e-77 293.5 427 41.2
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 2.2e-76 290.4 441 43.1
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 4.8e-76 289.3 430 41.6
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 8.2e-76 288.5 427 42.2
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.4e-75 287.7 322 50.3
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 1.8e-75 287.3 425 41.9
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 1.6e-74 284.3 357 47.9
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 5.9e-74 282.3 423 39.7
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 7.7e-74 282.0 422 42.7
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 3.8e-73 279.6 448 41.7
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 3.8e-73 279.6 481 39.9
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 4.0e-70 269.6 412 39.3
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 6.8e-70 268.9 418 41.4
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 6.8e-70 268.9 452 40.7
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 8.8e-70 268.5 426 39.9
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.2e-69 268.1 425 40.7
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 1.1e-67 261.5 417 39.6
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 3.5e-66 256.5 427 39.1
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 6.5e-65 252.3 431 39.4
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 6.8e-62 242.3 415 38.6
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 4.4e-61 239.6 431 38.1
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 1.7e-60 237.7 417 39.6
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.1e-59 235.0 416 38.2
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 3.5e-58 229.9 413 38.0
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 1.3e-57 228.0 304 46.4
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 8.6e-57 225.3 415 35.9
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.1e-56 224.9 413 37.8
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 3.3e-56 223.4 429 35.2
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 4.3e-56 223.0 334 40.4
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 5.6e-56 222.6 396 36.9
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 2.8e-55 220.3 351 39.3
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 1.8e-54 217.6 306 42.2
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 1.2e-53 214.9 274 44.5
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 1.7e-49 201.1 372 35.8
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 8.9e-46 188.7 440 32.3
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 1.2e-45 188.3 178 56.7
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 3.2e-43 180.3 420 34.5
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 3.7e-36 156.8 163 50.9
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.6e-34 151.4 225 43.1
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 6.8e-30 136.0 194 42.8
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 7.6e-29 132.5 211 40.8
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 6.4e-28 129.4 430 28.4
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 1.1e-24 118.6 436 27.3
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 1.5e-24 118.2 157 46.5
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 1.9e-24 117.9 157 46.5
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 4.3e-24 116.7 157 45.9
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 4.3e-24 116.7 157 45.9
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 4.7e-23 113.2 150 46.0
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 5.8e-21 106.3 168 36.9
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 3.9e-17 93.6 86 59.3
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 5.6e-16 89.7 128 44.5
VMungo0540G1158 Vigna mungo HOM05D004053 ORTHO05D005065 7.3e-16 89.4 111 45.0
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.4e-11 75.1 61 65.6
arahy.Tifrunner.gnm1.ann1.59R5K9 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.9e-11 74.7 99 44.4
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 3.5e-10 70.5 125 38.4
arahy.Tifrunner.gnm1.ann1.HAWP0L Arachis hypogaea HOM05D019977 ORTHO05D005065 6.0e-10 69.7 185 31.9
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 1.0e-09 68.9 70 50.0
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 1.0e-09 68.9 70 50.0
Hma1.2p1_0377F.1_g139390 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 2.3e-09 67.8 60 53.3
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 3.9e-09 67.0 58 51.7
Eucgr.H01039 Eucalyptus grandis HOM05D005016 ORTHO05D005740 5.1e-09 66.6 67 53.7
Eucgr.H03488 Eucalyptus grandis HOM05D005016 ORTHO05D005740 5.1e-09 66.6 67 53.7
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 5.6e-08 63.2 67 50.7
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 5.6e-08 63.2 67 50.7
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 5.6e-08 63.2 67 50.7
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 1.3e-07 62.0 82 41.5
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 1.6e-07 61.6 268 28.0
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 1.1e-06 58.9 59 47.5
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 2.4e-06 57.8 80 38.8
C05p54450 Brassica napus HOM05D021248 ORTHO05D018618 3.1e-06 57.4 61 52.5
BolC5t28964H Brassica oleracea HOM05D004053 ORTHO05D005065 4.0e-06 57.0 110 35.5
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 9.0e-06 55.8 121 37.2
C01p45260 Brassica napus HOM05D021248 ORTHO05D018618 9.0e-06 55.8 61 52.5


User provided reference genes

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