Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G204800 Populus trichocarpa HOM05D005224 ORTHO05D006372 9.2e-46 186.4 87 100.0
Potri.014G129600 Populus trichocarpa HOM05D005224 ORTHO05D006372 2.4e-38 161.8 78 94.9
Dinv29760 Davidia involucrata HOM05D005224 ORTHO05D006372 3.9e-36 154.5 76 90.8
Dinv44366 Davidia involucrata HOM05D005224 ORTHO05D006372 3.9e-36 154.5 76 90.8
Ciclev10033216m.g Citrus clementina HOM05D005224 ORTHO05D006372 1.1e-35 152.9 76 89.5
Eucgr.K03475 Eucalyptus grandis HOM05D005224 ORTHO05D006372 1.1e-35 152.9 76 89.5
CARHR173060 Cardamine hirsuta HOM05D005224 ORTHO05D006372 1.5e-35 152.5 87 80.5
PSO210G2815 Papaver somniferum HOM05D005224 ORTHO05D006372 1.9e-35 152.1 85 77.6
PSO832G3231 Papaver somniferum HOM05D005224 ORTHO05D006372 2.5e-35 151.8 85 77.6
vmacro03691 Vaccinium macrocarpon HOM05D005224 ORTHO05D006372 3.3e-35 151.4 85 81.2
A07p26090 Brassica napus HOM05D005224 ORTHO05D006372 4.3e-35 151.0 86 82.6
Lj1g0012977 Lotus japonicus HOM05D005224 ORTHO05D006372 4.3e-35 151.0 75 92.0
Hund11874 Selenicereus undatus HOM05D005224 ORTHO05D006372 4.3e-35 151.0 76 86.8
Cpa.g.sc19.280 Carica papaya HOM05D005224 ORTHO05D006372 5.6e-35 150.6 77 89.6
ECA246G3542 Erigeron canadensis HOM05D005224 ORTHO05D006372 5.6e-35 150.6 77 87.0
Ah.02g128370 Amaranthus hybridus HOM05D005224 ORTHO05D006372 7.3e-35 150.2 76 85.5
Glyma.19G211200 Glycine max HOM05D005224 ORTHO05D006372 7.3e-35 150.2 71 94.4
Manes.01G218400 Manihot esculenta HOM05D005224 ORTHO05D006372 7.3e-35 150.2 76 90.8
EL10Ac3g05917 Beta vulgaris HOM05D005224 ORTHO05D006372 9.5e-35 149.8 76 85.5
DCAR_027069 Daucus carota HOM05D005224 ORTHO05D006372 9.5e-35 149.8 75 89.3
Thhalv10001702m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 9.5e-35 149.8 88 81.8
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 9.5e-35 149.8 83 83.1
BcaB02g08753 Brassica carinata HOM05D005224 ORTHO05D006372 1.2e-34 149.4 87 82.8
BcaC07g40762 Brassica carinata HOM05D005224 ORTHO05D006372 1.2e-34 149.4 87 82.8
BcaC07g42731 Brassica carinata HOM05D005224 ORTHO05D006372 1.2e-34 149.4 87 82.8
BcaNung06420 Brassica carinata HOM05D005224 ORTHO05D006372 1.2e-34 149.4 87 82.8
A09p54640 Brassica napus HOM05D005224 ORTHO05D006372 1.2e-34 149.4 87 82.8
C08p37540 Brassica napus HOM05D005224 ORTHO05D006372 1.2e-34 149.4 87 82.8
BraA05t19024Z Brassica rapa HOM05D005224 ORTHO05D006372 1.2e-34 149.4 87 81.6
BraA09t40875Z Brassica rapa HOM05D005224 ORTHO05D006372 1.2e-34 149.4 87 82.8
HanXRQChr06g0173941 Helianthus annuus HOM05D005224 ORTHO05D006372 1.2e-34 149.4 77 85.7
Hma1.2p1_1185F.1_g264980 Hydrangea macrophylla HOM05D005224 ORTHO05D006372 1.2e-34 149.4 76 85.5
Sp5g00730 Schrenkiella parvula HOM05D005224 ORTHO05D006372 1.2e-34 149.4 87 82.8
Thecc.01G299700 Theobroma cacao HOM05D005224 ORTHO05D006372 1.2e-34 149.4 77 88.3
HPP92_017223 Vanilla planifolia HOM05D005224 ORTHO05D006372 1.2e-34 149.4 87 78.2
AT2G47690 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 1.6e-34 149.1 87 82.8
Duzib133G0273 Durio zibethinus HOM05D005224 ORTHO05D006372 1.6e-34 149.1 77 88.3
Glyma.03G214500 Glycine max HOM05D005224 ORTHO05D006372 1.6e-34 149.1 71 94.4
HanXRQChr17g0538761 Helianthus annuus HOM05D005224 ORTHO05D006372 1.6e-34 149.1 76 86.8
Manes.05G062300 Manihot esculenta HOM05D005224 ORTHO05D006372 1.6e-34 149.1 81 85.2
AL4G47260 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 2.1e-34 148.7 87 81.6
Carub.0004s3041 Capsella rubella HOM05D005224 ORTHO05D006372 2.1e-34 148.7 77 89.6
Psat3g022120 Pisum sativum HOM05D005224 ORTHO05D006372 2.1e-34 148.7 83 83.1
PGR042G0105 Punica granatum HOM05D005224 ORTHO05D006372 2.1e-34 148.7 72 93.1
Sp4g29630 Schrenkiella parvula HOM05D005224 ORTHO05D006372 2.1e-34 148.7 88 80.7
THA.LOC104817499 Tarenaya hassleriana HOM05D005224 ORTHO05D006372 2.1e-34 148.7 73 90.4
BcaC02g12549 Brassica carinata HOM05D005224 ORTHO05D006372 2.8e-34 148.3 73 90.4
C04p00180 Brassica napus HOM05D005224 ORTHO05D006372 2.8e-34 148.3 73 90.4
BolC4t21665H Brassica oleracea HOM05D005224 ORTHO05D006372 2.8e-34 148.3 73 90.4
BolC6t38010H Brassica oleracea HOM05D005224 ORTHO05D006372 2.8e-34 148.3 76 89.5
CSS0034435 Camellia sinensis var. sinensis HOM05D005224 ORTHO05D006372 2.8e-34 148.3 71 91.5
CARHR143080 Cardamine hirsuta HOM05D005224 ORTHO05D006372 2.8e-34 148.3 73 90.4
Duzib211G0376 Durio zibethinus HOM05D005224 ORTHO05D006372 2.8e-34 148.3 86 81.4
Thhalv10006347m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 2.8e-34 148.3 73 90.4
AL5G45570 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 3.6e-34 147.9 73 90.4
AT3G62790 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 3.6e-34 147.9 73 90.4
CANSAT25G2283 Cannabis sativa HOM05D005224 ORTHO05D006372 3.6e-34 147.9 77 87.0
Carub.0005s2944 Capsella rubella HOM05D005224 ORTHO05D006372 3.6e-34 147.9 73 90.4
RcHm_v2.0_Chr6g0293941 Rosa chinensis HOM05D005224 ORTHO05D006372 3.6e-34 147.9 74 87.8
ClCG10G010880 Citrullus lanatus HOM05D005224 ORTHO05D006372 4.7e-34 147.5 72 91.7
Lsat_1_v5_gn_3_24761 Lactuca sativa HOM05D005224 ORTHO05D006372 4.7e-34 147.5 74 87.8
A05p00270 Brassica napus HOM05D005224 ORTHO05D006372 6.2e-34 147.1 73 89.0
Cfa005919 Carpinus fangiana HOM05D005224 ORTHO05D006372 6.2e-34 147.1 71 91.5
Haze_04931 Corylus avellana HOM05D005224 ORTHO05D006372 6.2e-34 147.1 71 91.5
FvH4_2g25680 Fragaria vesca HOM05D005224 ORTHO05D006372 6.2e-34 147.1 74 86.5
FAN15G2088 Fragaria x ananassa HOM05D005224 ORTHO05D006372 6.2e-34 147.1 74 86.5
FAN20G0551 Fragaria x ananassa HOM05D005224 ORTHO05D006372 6.2e-34 147.1 74 86.5
FAN27G2170 Fragaria x ananassa HOM05D005224 ORTHO05D006372 6.2e-34 147.1 74 86.5
Lalb_Chr04g0259841 Lupinus albus HOM05D005224 ORTHO05D006372 6.2e-34 147.1 71 93.0
GSVIVG01035146001 Vitis vinifera HOM05D005224 ORTHO05D006372 6.2e-34 147.1 75 86.7
Aa31LG1G29010 Aethionema arabicum HOM05D005224 ORTHO05D006372 8.0e-34 146.7 73 89.0
MD03G1287600 Malus domestica HOM05D005224 ORTHO05D006372 8.0e-34 146.7 74 86.5
Phvul.001G207200 Phaseolus vulgaris HOM05D005224 ORTHO05D006372 8.0e-34 146.7 83 80.7
Sed0019318 Sechium edule HOM05D005224 ORTHO05D006372 8.0e-34 146.7 81 84.0
TPR.G9599 Trifolium pratense HOM05D005224 ORTHO05D006372 8.0e-34 146.7 77 85.7
BcaB02g07318 Brassica carinata HOM05D005224 ORTHO05D006372 1.1e-33 146.4 76 88.2
Actinidia24346 Actinidia chinensis HOM05D001413 ORTHO05D001385 1.4e-33 146.0 72 88.9
Cc04_g11150 Coffea canephora HOM05D005224 ORTHO05D006372 1.4e-33 146.0 76 88.2
Gohir.A12G130700 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.4e-33 146.0 86 79.1
Gohir.D12G134600 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.4e-33 146.0 86 79.1
Gorai.008G145500 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.4e-33 146.0 86 79.1
Sed0018249 Sechium edule HOM05D005224 ORTHO05D006372 1.4e-33 146.0 72 90.3
TWI14G1007 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 1.4e-33 146.0 71 91.5
Gohir.A08G042400 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.8e-33 145.6 88 79.5
Gohir.D08G052200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.8e-33 145.6 88 79.5
Gorai.004G052300 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.8e-33 145.6 88 79.5
MBI18_g06871_MAGBIO Magnolia biondii HOM05D005224 ORTHO05D006372 1.8e-33 145.6 85 76.5
Prupe.8G260800 Prunus persica HOM05D005224 ORTHO05D006372 1.8e-33 145.6 74 85.1
arahy.Tifrunner.gnm1.ann1.8KN71Z Arachis hypogaea HOM05D005224 ORTHO05D006372 2.3e-33 145.2 83 80.7
arahy.Tifrunner.gnm1.ann1.EEQ3S4 Arachis hypogaea HOM05D005224 ORTHO05D006372 2.3e-33 145.2 83 80.7
arahy.Tifrunner.gnm1.ann1.U5VDRT Arachis hypogaea HOM05D005224 ORTHO05D006372 2.3e-33 145.2 83 80.7
Nn4g25791 Nelumbo nucifera HOM05D005224 ORTHO05D006372 2.3e-33 145.2 75 84.0
TAR365G0183 Trochodendron aralioides HOM05D005224 ORTHO05D006372 2.3e-33 145.2 72 88.9
Aqoxy2G02950 Aquilegia oxysepala HOM05D005224 ORTHO05D006372 4.0e-33 144.4 79 79.7
C06p28410 Brassica napus HOM05D005224 ORTHO05D006372 4.0e-33 144.4 76 86.8
Lalb_Chr15g0078521 Lupinus albus HOM05D005224 ORTHO05D006372 4.0e-33 144.4 71 90.1
Gohir.A08G075800 Gossypium hirsutum HOM05D005224 ORTHO05D006372 5.2e-33 144.1 86 77.9
Gohir.D08G085200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 5.2e-33 144.1 86 77.9
Gorai.004G089700 Gossypium raimondii HOM05D005224 ORTHO05D006372 5.2e-33 144.1 86 77.9
TWI23G0618 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 5.2e-33 144.1 71 88.7
CsaV3_4G000760 Cucumis sativus L. HOM05D005224 ORTHO05D006372 6.8e-33 143.7 72 87.5
Migut.D02475 Erythranthe guttata HOM05D005224 ORTHO05D006372 6.8e-33 143.7 74 85.1
CDE09G0321 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 8.9e-33 143.3 73 84.9
Migut.D00213 Erythranthe guttata HOM05D005224 ORTHO05D006372 8.9e-33 143.3 74 85.1
PSO210G7006 Papaver somniferum HOM05D005224 ORTHO05D006372 1.2e-32 142.9 84 76.2
unitig_0.g663 Utricularia gibba HOM05D005224 ORTHO05D006372 2.0e-32 142.1 74 83.8
QL12p028550 Quercus lobata HOM05D005224 ORTHO05D006372 2.6e-32 141.7 77 84.4
Zm00001eb039670 Zea mays HOM05D005224 ORTHO05D006372 3.4e-32 141.4 87 72.4
CiPaw.07G108200 Carya illinoinensis HOM05D005224 ORTHO05D006372 4.4e-32 141.0 77 83.1
CDE02G3260 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 4.4e-32 141.0 71 85.9
MELO3C017960.2 Cucumis melo HOM05D005224 ORTHO05D006372 4.4e-32 141.0 72 86.1
PSO170G2085 Papaver somniferum HOM05D005224 ORTHO05D006372 7.5e-32 140.2 77 80.5
Nitab4.5_0011375g0020 Nicotiana tabacum HOM05D005224 ORTHO05D006372 9.8e-32 139.8 69 88.4
Actinidia32220 Actinidia chinensis HOM05D005224 ORTHO05D006372 1.3e-31 139.4 72 84.7
Os08g0556600 Oryza sativa ssp. japonica HOM05D005224 ORTHO05D006372 1.3e-31 139.4 73 83.6
ATR0796G245 Amborella trichopoda HOM05D005224 ORTHO05D006372 1.7e-31 139.0 72 84.7
Sc25g0004000 Simmondsia chinensis HOM05D005224 ORTHO05D006372 1.9e-30 135.6 98 68.4
Peaxi162Scf00589g00224 Petunia axillaris HOM05D005224 ORTHO05D006372 2.4e-30 135.2 65 89.2
TAR370G0003 Trochodendron aralioides HOM05D005224 ORTHO05D006372 2.4e-30 135.2 63 93.7
COL.COLO4_23352 Corchorus olitorius HOM05D005224 ORTHO05D006372 1.6e-29 132.5 97 69.1
Solyc11g005880.2 Solanum lycopersicum HOM05D005224 ORTHO05D006372 3.5e-29 131.3 62 90.3
Sopen11g001830 Solanum pennellii HOM05D005224 ORTHO05D006372 3.5e-29 131.3 62 90.3
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 4.6e-29 131.0 76 77.6
Nitab4.5_0000805g0100 Nicotiana tabacum HOM05D005224 ORTHO05D006372 7.8e-29 130.2 61 90.2
SalBow3G4056 Salvia bowleyana HOM05D005224 ORTHO05D006372 7.8e-29 130.2 97 64.9
PGSC0003DMG400028681 Solanum tuberosum HOM05D005224 ORTHO05D006372 1.0e-28 129.8 61 90.2
CAN.G652.1 Capsicum annuum HOM05D005224 ORTHO05D006372 3.0e-28 128.3 60 90.0
SHI19781 Sapria himalayana HOM05D005224 ORTHO05D006372 6.6e-28 127.1 68 80.9
BcaC08g45239 Brassica carinata HOM05D005224 ORTHO05D006372 7.3e-27 123.6 57 91.2
TAR633G1838 Trochodendron aralioides HOM05D005224 ORTHO05D006372 5.8e-24 114.0 64 79.7
BraA07t30257Z Brassica rapa HOM05D005224 ORTHO05D006372 2.9e-23 111.7 50 92.0
Oeu054123.1 Olea europaea HOM05D005224 ORTHO05D006372 2.9e-23 111.7 50 92.0
HanXRQChr08g0223921 Helianthus annuus HOM05D005224 ORTHO05D006372 4.9e-23 110.9 50 92.0
HanXRQChr09g0263651 Helianthus annuus HOM05D005224 ORTHO05D006372 5.4e-22 107.5 50 88.0
MD02G1095800 Malus domestica HOM05D005224 ORTHO05D006372 4.6e-21 104.4 49 85.7
CBR_g52287 Chara braunii HOM05D005224 ORTHO05D006372 6.0e-21 104.0 76 61.8
Mapoly0155s0025 Marchantia polymorpha HOM05D005224 ORTHO05D006372 5.1e-20 100.9 78 62.8
CiPaw.08G095500 Carya illinoinensis HOM05D005224 ORTHO05D006372 2.8e-18 95.1 63 76.2
Pp3c11_13470 Physcomitrium patens HOM05D005224 ORTHO05D006372 6.2e-18 94.0 64 60.9
Pp3c7_20680 Physcomitrium patens HOM05D005224 ORTHO05D006372 6.2e-18 94.0 64 60.9
AagrBONN_evm.TU.Sc2ySwM_344.1353 Anthoceros agrestis HOM05D005224 ORTHO05D006372 5.2e-17 90.9 70 55.7
MCO16G429 Micromonas commoda HOM05D005224 ORTHO05D006372 3.0e-12 75.1 63 50.8
arahy.Tifrunner.gnm1.ann1.YEW5FF Arachis hypogaea HOM05D005224 ORTHO05D006372 6.4e-07 57.4 29 82.8
AUR62015428 Chenopodium quinoa HOM05D005224 ORTHO05D006372 1.4e-06 56.2 23 95.7


User provided reference genes

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