Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 9.0e-107 390.2 188 100.0
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 4.7e-79 298.1 189 82.0
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 3.0e-78 295.4 193 78.8
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 5.9e-74 281.2 186 79.0
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 2.5e-56 222.6 183 69.4
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.7e-52 209.9 195 61.0
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 5.4e-51 204.9 187 61.5
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 1.6e-50 203.4 198 58.1
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.0e-49 200.7 188 60.1
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 1.7e-49 199.9 194 57.7
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 5.0e-49 198.4 195 57.9
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 2.8e-47 192.6 193 60.1
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 4.7e-47 191.8 178 57.3
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 8.0e-47 191.0 195 55.9
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 1.8e-46 189.9 193 55.4
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.6e-45 186.0 194 52.1
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 3.4e-45 185.7 191 55.5
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 5.8e-45 184.9 195 51.3
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 9.8e-45 184.1 205 55.6
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 1.7e-44 183.3 197 52.8
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 2.9e-44 182.6 182 55.5
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.9e-44 182.6 205 54.1
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 3.7e-44 182.2 198 55.1
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 4.9e-44 181.8 202 53.0
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 2.4e-43 179.5 189 56.6
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 2.4e-43 179.5 186 57.0
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 3.2e-43 179.1 175 56.0
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 4.1e-43 178.7 195 52.8
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 5.4e-43 178.3 192 53.1
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 9.2e-43 177.6 197 51.8
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 9.2e-43 177.6 188 53.2
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 1.2e-42 177.2 195 53.8
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.6e-42 176.8 193 51.8
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 2.7e-42 176.0 187 53.5
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 3.5e-42 175.6 189 56.1
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 3.5e-42 175.6 197 50.8
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.6e-42 175.3 181 51.9
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.6e-42 175.3 193 50.8
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.0e-41 174.1 184 54.9
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 1.7e-41 173.3 172 56.4
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 1.7e-41 173.3 172 55.2
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 1.7e-41 173.3 188 54.3
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.0e-41 172.6 184 53.3
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 6.6e-41 171.4 196 52.0
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.1e-40 170.6 197 50.8
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 1.9e-40 169.9 178 51.1
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.9e-40 169.9 190 53.7
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.9e-40 169.9 193 52.8
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.9e-40 169.9 196 52.6
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 2.5e-40 169.5 186 50.5
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 2.5e-40 169.5 176 51.7
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 2.5e-40 169.5 175 54.9
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.3e-40 168.7 194 53.6
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 5.6e-40 168.3 189 52.4
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 9.5e-40 167.5 190 52.6
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 9.5e-40 167.5 175 52.6
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 1.2e-39 167.2 188 52.7
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.6e-39 166.8 194 52.6
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 2.8e-39 166.0 190 52.1
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 2.8e-39 166.0 184 56.0
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 3.6e-39 165.6 181 52.5
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 6.2e-39 164.9 179 54.2
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 1.4e-38 163.7 201 49.3
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 3.1e-38 162.5 180 51.1
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.2e-38 161.8 188 47.3
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 6.8e-38 161.4 191 52.4
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 1.5e-37 160.2 194 45.9
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 3.4e-37 159.1 180 48.3
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 3.4e-37 159.1 190 51.6
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 5.8e-37 158.3 182 50.0
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 5.8e-37 158.3 174 51.1
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 7.5e-37 157.9 172 51.7
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 7.5e-37 157.9 187 49.2
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 2.2e-36 156.4 182 47.8
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 2.2e-36 156.4 192 51.0
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 3.7e-36 155.6 173 52.0
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 3.7e-36 155.6 178 48.9
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 3.7e-36 155.6 182 47.3
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 3.7e-36 155.6 182 47.3
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 3.7e-36 155.6 174 54.0
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 4.9e-36 155.2 190 49.5
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 4.9e-36 155.2 182 50.5
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 6.4e-36 154.8 185 48.6
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 6.4e-36 154.8 194 50.5
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 6.4e-36 154.8 177 50.8
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 1.1e-35 154.1 196 49.5
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 1.4e-35 153.7 183 47.5
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 1.4e-35 153.7 220 45.0
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 1.9e-35 153.3 184 51.1
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.1e-35 152.1 181 45.9
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 5.4e-35 151.8 178 47.8
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 5.4e-35 151.8 203 49.8
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 5.4e-35 151.8 191 50.3
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 7.1e-35 151.4 176 49.4
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 1.2e-34 150.6 178 46.6
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.6e-34 150.2 184 47.8
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.6e-34 150.2 202 45.5
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 1.6e-34 150.2 181 50.8
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 1.6e-34 150.2 184 52.2
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 2.1e-34 149.8 184 48.9
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 4.6e-34 148.7 185 45.9
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 1.3e-33 147.1 202 44.6
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.3e-33 147.1 202 44.6
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.3e-33 147.1 202 45.0
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.3e-33 147.1 202 44.6
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 1.3e-33 147.1 190 47.4
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.3e-33 146.4 162 51.2
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 2.3e-33 146.4 182 45.1
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 5.1e-33 145.2 179 47.5
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 5.1e-33 145.2 179 47.5
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 8.6e-33 144.4 184 46.7
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 8.6e-33 144.4 184 46.7
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 1.9e-32 143.3 178 46.1
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 2.5e-32 142.9 193 47.2
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 5.6e-32 141.7 186 50.5
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 7.3e-32 141.4 177 49.7
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 2.1e-31 139.8 179 48.0
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 2.1e-31 139.8 177 45.2
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 2.8e-31 139.4 188 42.0
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 2.8e-31 139.4 198 44.4
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 4.7e-31 138.7 184 47.8
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 4.7e-31 138.7 190 49.5
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 8.1e-31 137.9 183 42.6
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 8.1e-31 137.9 176 50.0
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 1.1e-30 137.5 180 43.3
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 1.1e-30 137.5 182 42.9
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.4e-30 137.1 179 45.8
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.8e-30 136.7 177 45.2
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 1.8e-30 136.7 185 47.6
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 2.4e-30 136.3 188 41.5
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 2.4e-30 136.3 188 41.5
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 2.4e-30 136.3 188 41.5
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 5.2e-30 135.2 185 46.5
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.8e-30 134.8 139 53.2
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 2.0e-29 133.3 178 46.6
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 5.8e-29 131.7 173 49.1
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.2e-28 129.8 194 41.8
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 8.4e-28 127.9 185 43.8
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 1.9e-27 126.7 181 49.2
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 5.4e-27 125.2 145 46.9
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 4.6e-26 122.1 182 42.9
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 7.8e-26 121.3 189 42.9
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.3e-25 119.8 179 40.8
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 2.3e-25 119.8 173 40.5
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 5.6e-24 115.2 219 41.6
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 9.6e-24 114.4 166 42.2
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 9.6e-24 114.4 163 44.8
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 1.6e-23 113.6 174 44.3
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.1e-23 113.2 149 46.3
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 1.5e-21 107.1 175 44.6
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.5e-21 107.1 174 40.8
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 7.6e-21 104.8 178 41.6
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.4e-19 100.5 174 37.9
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 5.4e-19 98.6 130 46.9
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 3.5e-18 95.9 174 38.5
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.0e-17 94.4 101 51.5
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.1e-17 92.0 103 48.5
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 5.1e-17 92.0 223 35.0
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.5e-16 89.7 128 44.5
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.8e-15 86.3 99 47.5
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 2.8e-15 86.3 197 34.0
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.1e-14 84.3 179 37.4
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 1.5e-13 80.5 91 49.5
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.6e-13 79.7 124 41.9
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.5e-13 79.0 108 43.5
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 7.6e-13 78.2 202 33.7
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.7e-12 77.0 144 38.9
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 6.4e-12 75.1 175 32.0
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 1.4e-11 73.9 112 41.1
SEGI_22681 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 1.6e-10 70.5 201 34.3
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 2.1e-10 70.1 209 29.7
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 3.5e-10 69.3 185 31.4
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.3e-08 62.8 51 64.7
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 5.6e-08 62.0 156 29.5
QL02p068251 Quercus lobata HOM05D001131 ORTHO05D000972 6.2e-07 58.5 210 27.1
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 8.1e-07 58.2 139 33.8
Os01g0861400 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 1.1e-06 57.8 131 32.1
Nn2g14986 Nelumbo nucifera HOM05D003790 ORTHO05D004481 1.8e-06 57.0 36 63.9
SEGI_15713 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 1.8e-06 57.0 210 29.5
CAN.G69.6 Capsicum annuum HOM05D003790 ORTHO05D004481 4.0e-06 55.8 102 43.1
Sed0004223 Sechium edule HOM05D001131 ORTHO05D000972 5.3e-06 55.5 181 30.4
MELO3C017926.2 Cucumis melo HOM05D003790 ORTHO05D044967 9.0e-06 54.7 174 27.6
TAR629G3365 Trochodendron aralioides HOM05D001131 ORTHO05D000972 9.0e-06 54.7 186 28.5


User provided reference genes

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