Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G195066 Populus trichocarpa HOM05D001340 ORTHO05D002318 1.1e-108 396.7 207 100.0
Sabra02G0161700 Salix brachista HOM05D001340 ORTHO05D002318 5.0e-74 281.6 188 81.9
Potri.014G119600 Populus trichocarpa HOM05D001340 ORTHO05D002318 5.2e-63 245.0 189 73.5
Sabra14G0088600 Salix brachista HOM05D001340 ORTHO05D002318 4.4e-62 241.9 189 74.1
Manes.05G004500 Manihot esculenta HOM05D001340 ORTHO05D002318 1.1e-41 174.1 202 54.5
CiPaw.07G118500 Carya illinoinensis HOM05D001340 ORTHO05D002318 6.0e-35 151.8 207 47.8
Cfa005783 Carpinus fangiana HOM05D001340 ORTHO05D002318 2.3e-34 149.8 198 48.5
Haze_05057 Corylus avellana HOM05D001340 ORTHO05D002318 3.9e-34 149.1 198 49.0
arahy.Tifrunner.gnm1.ann1.W1X4YZ Arachis hypogaea HOM05D001340 ORTHO05D002318 8.6e-34 147.9 202 48.0
VMungo1383G2602 Vigna mungo HOM05D001340 ORTHO05D002318 3.3e-33 146.0 202 48.0
Thecc.01G314700 Theobroma cacao HOM05D001340 ORTHO05D002318 9.5e-33 144.4 220 47.7
arahy.Tifrunner.gnm1.ann1.0F9TFU Arachis hypogaea HOM05D001340 ORTHO05D002318 1.2e-32 144.1 200 47.0
Duzib138G1716 Durio zibethinus HOM05D001340 ORTHO05D002318 2.8e-32 142.9 218 48.6
Dinv10110 Davidia involucrata HOM05D001340 ORTHO05D002318 8.0e-32 141.4 229 44.5
Glyma.03G220300 Glycine max HOM05D001340 ORTHO05D002318 5.2e-31 138.7 202 47.5
Glyma.19G217200 Glycine max HOM05D001340 ORTHO05D002318 6.8e-31 138.3 202 46.5
Phvul.001G213800 Phaseolus vulgaris HOM05D001340 ORTHO05D002318 1.2e-30 137.5 197 47.7
Duzib133G1523 Durio zibethinus HOM05D001340 ORTHO05D002318 2.0e-30 136.7 197 48.7
Ca_09216_v3 Cicer arietinum L. HOM05D001340 ORTHO05D002318 2.6e-30 136.3 206 45.6
MD03G1292700 Malus domestica HOM05D001340 ORTHO05D002318 2.6e-30 136.3 215 45.6
Prupe.8G265700 Prunus persica HOM05D001340 ORTHO05D002318 1.3e-29 134.0 192 47.9
TAR362G0447 Trochodendron aralioides HOM05D001340 ORTHO05D002318 3.7e-29 132.5 201 46.8
TPR.G4096 Trifolium pratense HOM05D001340 ORTHO05D002318 4.9e-29 132.1 189 51.3
Lj1g0005808 Lotus japonicus HOM05D001340 ORTHO05D002318 1.4e-28 130.6 182 48.4
Dinv33126 Davidia involucrata HOM05D001340 ORTHO05D002318 7.0e-28 128.3 232 40.1
TAR633G1266 Trochodendron aralioides HOM05D001340 ORTHO05D002318 7.0e-28 128.3 209 43.5
MD00G1140600 Malus domestica HOM05D001340 ORTHO05D002318 1.6e-27 127.1 215 43.7
COL.COLO4_23221 Corchorus olitorius HOM05D001340 ORTHO05D002318 3.5e-27 125.9 200 45.5
Psat3g019600 Pisum sativum HOM05D001340 ORTHO05D002318 6.0e-27 125.2 189 47.1
arahy.Tifrunner.gnm1.ann1.IPGA62 Arachis hypogaea HOM05D001340 ORTHO05D002318 1.1e-25 120.9 182 44.5
arahy.Tifrunner.gnm1.ann1.QXLP7L Arachis hypogaea HOM05D001340 ORTHO05D002318 1.1e-25 120.9 182 44.5
Cpa.g.sc18.58 Carica papaya HOM05D001340 ORTHO05D002318 1.1e-25 120.9 198 47.5
PGR044G2294 Punica granatum HOM05D001340 ORTHO05D002318 2.5e-25 119.8 201 44.3
Actinidia17907 Actinidia chinensis HOM05D001340 ORTHO05D002318 5.6e-25 118.6 213 40.8
Gohir.A07G128900 Gossypium hirsutum HOM05D001340 ORTHO05D002318 7.3e-25 118.2 202 44.6
CsaV3_7G030020 Cucumis sativus L. HOM05D001340 ORTHO05D002318 9.5e-25 117.9 200 44.5
Gorai.001G144600 Gossypium raimondii HOM05D001340 ORTHO05D002318 2.1e-24 116.7 196 43.9
Eucgr.K03549 Eucalyptus grandis HOM05D001340 ORTHO05D002318 2.8e-24 116.3 208 43.3
Atru.chr5.981 Acer truncatum HOM05D001340 ORTHO05D002318 4.7e-24 115.5 199 44.2
CANSAT25G2668 Cannabis sativa HOM05D001340 ORTHO05D002318 4.7e-24 115.5 201 43.3
MELO3C015918.2 Cucumis melo HOM05D001340 ORTHO05D002318 1.4e-23 114.0 200 44.0
Lalb_Chr06g0166911 Lupinus albus HOM05D001340 ORTHO05D002318 1.8e-23 113.6 192 43.8
AUR62011794 Chenopodium quinoa HOM05D001340 ORTHO05D002318 4.0e-23 112.5 214 40.7
RcHm_v2.0_Chr7g0241001 Rosa chinensis HOM05D001340 ORTHO05D002318 4.0e-23 112.5 184 45.7
Lalb_Chr18g0046671 Lupinus albus HOM05D001340 ORTHO05D002318 5.2e-23 112.1 199 41.7
EL10As5g23542 Beta vulgaris HOM05D001340 ORTHO05D002318 1.5e-22 110.5 199 41.7
TAR365G0840 Trochodendron aralioides HOM05D001340 ORTHO05D002318 1.5e-22 110.5 230 40.0
CiPaw.08G088900 Carya illinoinensis HOM05D001340 ORTHO05D002318 2.6e-22 109.8 209 41.1
AUR62024641 Chenopodium quinoa HOM05D001340 ORTHO05D002318 2.6e-22 109.8 218 40.4
GSVIVG01028133001 Vitis vinifera HOM05D001340 ORTHO05D002318 4.4e-22 109.0 189 43.9
Sed0004948 Sechium edule HOM05D001340 ORTHO05D002318 7.5e-22 108.2 192 41.7
Dinv24448 Davidia involucrata HOM05D001340 ORTHO05D002318 1.7e-21 107.1 230 37.0
CSS0006677 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D002318 2.2e-21 106.7 229 37.6
Ah.02g112340 Amaranthus hybridus HOM05D001340 ORTHO05D002318 2.9e-21 106.3 196 43.4
CiPaw.08G155000 Carya illinoinensis HOM05D001340 ORTHO05D002318 1.4e-20 104.0 206 41.7
CSS0003451 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D002318 4.1e-20 102.4 207 38.6
CSS0038844 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D002318 4.1e-20 102.4 207 38.6
Hund02943 Selenicereus undatus HOM05D001340 ORTHO05D002318 2.7e-19 99.8 216 39.4
Actinidia20989 Actinidia chinensis HOM05D001340 ORTHO05D002318 3.5e-19 99.4 217 39.2
CSS0011362 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D002318 4.6e-19 99.0 198 44.4
Ciclev10023762m.g Citrus clementina HOM05D001340 ORTHO05D002318 6.0e-19 98.6 198 40.9
FAN04G0292 Fragaria x ananassa HOM05D001340 ORTHO05D002318 1.0e-18 97.8 202 40.1
MBI19_g40072_MAGBIO Magnolia biondii HOM05D001340 ORTHO05D002318 1.0e-18 97.8 246 38.6
Gohir.D07G133300 Gossypium hirsutum HOM05D001340 ORTHO05D002318 1.3e-18 97.4 176 42.6
CSS0002436 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D002318 2.3e-18 96.7 210 40.0
FAN13G2122 Fragaria x ananassa HOM05D001340 ORTHO05D002318 2.3e-18 96.7 183 42.1
Actinidia35519 Actinidia chinensis HOM05D001340 ORTHO05D002318 8.6e-18 94.7 235 35.3
Aqoxy3G00582 Aquilegia oxysepala HOM05D001340 ORTHO05D002318 2.5e-17 93.2 225 36.9
MBI18_g17310_MAGBIO Magnolia biondii HOM05D001340 ORTHO05D002318 3.3e-17 92.8 232 35.8
FvH4_5g39030 Fragaria vesca HOM05D001340 ORTHO05D002318 4.3e-17 92.4 209 38.3
Hma1.2p1_0486F.1_g163370 Hydrangea macrophylla HOM05D001340 ORTHO05D002318 9.5e-17 91.3 210 39.5
Lj1A16T39 Lonicera japonica HOM05D001340 ORTHO05D002318 2.8e-16 89.7 201 37.8
Hund09636 Selenicereus undatus HOM05D001340 ORTHO05D002318 2.8e-16 89.7 212 36.8
QL03p013963 Quercus lobata HOM05D001340 ORTHO05D002318 4.7e-16 89.0 211 37.4
Atru.chr2.202 Acer truncatum HOM05D001340 ORTHO05D002318 1.1e-15 87.8 201 37.8
PSO170G0296 Papaver somniferum HOM05D001340 ORTHO05D002318 1.1e-15 87.8 215 35.3
PSO357G0595 Papaver somniferum HOM05D001340 ORTHO05D002318 1.4e-15 87.4 215 35.3
THA.LOC104800350 Tarenaya hassleriana HOM05D001340 ORTHO05D002318 1.8e-15 87.0 193 40.4
Hma1.2p1_0008F-1.1_g005580 Hydrangea macrophylla HOM05D001340 ORTHO05D002318 2.4e-15 86.7 215 36.3
TWI56G0128 Tripterygium wilfordii HOM05D001340 ORTHO05D002318 1.2e-14 84.3 187 39.6
Cpa.g.sc48.166 Carica papaya HOM05D001340 ORTHO05D002318 1.5e-14 84.0 220 35.0
Rhsim13G0004400 Rhododendron simsii HOM05D001340 ORTHO05D002318 1.5e-14 84.0 192 40.6
GSVIVG01031244001 Vitis vinifera HOM05D001340 ORTHO05D002318 2.6e-14 83.2 208 37.5
Sabra13G0007000 Salix brachista HOM05D001340 ORTHO05D002318 7.6e-14 81.6 212 37.3
vmacro02397 Vaccinium macrocarpon HOM05D001340 ORTHO05D002318 9.9e-14 81.3 215 39.1
Manes.08G110850 Manihot esculenta HOM05D001340 ORTHO05D002318 1.3e-13 80.9 185 37.3
Haze_04057 Corylus avellana HOM05D001340 ORTHO05D002318 1.7e-13 80.5 199 35.2
Cc01_g21510 Coffea canephora HOM05D001340 ORTHO05D002318 4.9e-13 79.0 187 41.2
Cfa006706 Carpinus fangiana HOM05D001340 ORTHO05D002318 2.4e-12 76.6 199 35.7
Actinidia21395 Actinidia chinensis HOM05D001340 ORTHO05D002318 4.2e-12 75.9 171 37.4
Duzib177G1143 Durio zibethinus HOM05D001340 ORTHO05D002318 4.2e-12 75.9 186 35.5
CANSAT54G2406 Cannabis sativa HOM05D001340 ORTHO05D002318 7.1e-12 75.1 215 35.3
Thecc.05G323500 Theobroma cacao HOM05D001340 ORTHO05D002318 7.1e-12 75.1 188 34.6
TWI18G0419 Tripterygium wilfordii HOM05D001340 ORTHO05D002318 9.2e-12 74.7 196 36.2
CiPaw.07G030000 Carya illinoinensis HOM05D001340 ORTHO05D002318 3.5e-11 72.8 205 35.1
Potri.013G008300 Populus trichocarpa HOM05D001340 ORTHO05D002318 3.5e-11 72.8 193 35.8
TWI36G0984 Tripterygium wilfordii HOM05D001340 ORTHO05D002318 4.6e-11 72.4 201 36.3
PSO210G4454 Papaver somniferum HOM05D001340 ORTHO05D002318 1.0e-10 71.2 188 36.7
Gohir.A11G273800 Gossypium hirsutum HOM05D001340 ORTHO05D002318 1.7e-10 70.5 197 34.5
CDE02G2681 Ceratophyllum demersum HOM05D001340 ORTHO05D002318 3.0e-10 69.7 176 38.6
Gorai.007G306800 Gossypium raimondii HOM05D001340 ORTHO05D002318 3.0e-10 69.7 197 34.5
Ciclev10003914m.g Citrus clementina HOM05D001340 ORTHO05D002318 6.6e-10 68.6 173 34.7
Potri.005G014000 Populus trichocarpa HOM05D001340 ORTHO05D002318 6.6e-10 68.6 180 34.4
FAN09G1839 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.5e-09 67.4 189 34.4
Gohir.D11G283900 Gossypium hirsutum HOM05D001340 ORTHO05D002318 2.5e-09 66.6 197 34.0
HanXRQChr04g0106191 Helianthus annuus HOM05D001340 ORTHO05D002318 2.5e-09 66.6 193 34.2
Sed0018097 Sechium edule HOM05D001340 ORTHO05D002318 4.3e-09 65.9 199 34.7
MD12G1205400 Malus domestica HOM05D001340 ORTHO05D002318 7.3e-09 65.1 211 33.2
MD00G1208200 Malus domestica HOM05D001340 ORTHO05D002318 9.6e-09 64.7 212 32.5
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 9.6e-09 64.7 204 32.8
Oeu049916.1 Olea europaea HOM05D001340 ORTHO05D002318 1.6e-08 63.9 169 36.7
GSVIVG01035006001 Vitis vinifera HOM05D001340 ORTHO05D002318 1.6e-08 63.9 194 30.9
RcHm_v2.0_Chr3g0457181 Rosa chinensis HOM05D001340 ORTHO05D002318 2.1e-08 63.5 190 34.7
FvH4_6g07480 Fragaria vesca HOM05D001340 ORTHO05D002318 2.8e-08 63.2 189 33.3
FAN14G4490 Fragaria x ananassa HOM05D001340 ORTHO05D005342 2.8e-08 63.2 189 33.3
Lj5A331T38 Lonicera japonica HOM05D001340 ORTHO05D002318 3.6e-08 62.8 185 33.5
HanXRQChr06g0168121 Helianthus annuus HOM05D001340 ORTHO05D002318 6.2e-08 62.0 193 33.2
HPP92_015971 Vanilla planifolia HOM05D001340 ORTHO05D002318 6.2e-08 62.0 192 36.5
PGSC0003DMG400002766 Solanum tuberosum HOM05D001340 ORTHO05D002318 1.1e-07 61.2 192 34.9
FAN02G4226 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.8e-07 60.5 189 32.3
Sabra05G0021500 Salix brachista HOM05D001340 ORTHO05D005342 1.8e-07 60.5 187 32.1
Sc17g0000430 Simmondsia chinensis HOM05D001340 ORTHO05D002318 2.4e-07 60.1 183 36.6
Sopen01g044050 Solanum pennellii HOM05D001340 ORTHO05D002318 2.4e-07 60.1 184 33.7
DCAR_002890 Daucus carota HOM05D001340 ORTHO05D002318 5.3e-07 58.9 228 29.8
SGA_v2.0_scaffold376G50288 Striga asiatica HOM05D001340 ORTHO05D002318 5.3e-07 58.9 199 31.7
CDE09G1391 Ceratophyllum demersum HOM05D001340 ORTHO05D002318 6.9e-07 58.5 131 37.4
Sp4g29290 Schrenkiella parvula HOM05D001340 ORTHO05D002318 6.9e-07 58.5 191 32.5
Nitab4.5_0007087g0040 Nicotiana tabacum HOM05D001340 ORTHO05D002318 9.0e-07 58.2 186 34.4
Solyc01g079350.3 Solanum lycopersicum HOM05D001340 ORTHO05D002318 9.0e-07 58.2 185 32.4
Carub.0004s3007 Capsella rubella HOM05D001340 ORTHO05D002318 2.6e-06 56.6 191 32.5
Lalb_Chr18g0046681 Lupinus albus HOM05D001340 ORTHO05D002318 2.6e-06 56.6 182 31.9
CAN.G1076.16 Capsicum annuum HOM05D001340 ORTHO05D002318 3.4e-06 56.2 188 34.6
Solyc01g100540.4 Solanum lycopersicum HOM05D001340 ORTHO05D002318 3.4e-06 56.2 206 32.5
Thhalv10001400m.g Eutrema salsugineum HOM05D001340 ORTHO05D002318 4.4e-06 55.8 190 30.0
PGSC0003DMG400009046 Solanum tuberosum HOM05D001340 ORTHO05D002318 4.4e-06 55.8 185 31.9
vmacro01565 Vaccinium macrocarpon HOM05D001340 ORTHO05D002318 5.8e-06 55.5 188 35.1
Nitab4.5_0002033g0020 Nicotiana tabacum HOM05D001340 ORTHO05D002318 9.9e-06 54.7 194 30.4


User provided reference genes

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