Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G193300 Populus trichocarpa HOM05D006547 ORTHO05D008112 1.0e-70 270.0 139 100.0
Sabra02G0162800 Salix brachista HOM05D006547 ORTHO05D008112 7.2e-53 210.7 140 82.9
Potri.014G118300 Populus trichocarpa HOM05D006547 ORTHO05D008112 8.3e-49 197.2 136 77.2
Sabra14G0087800 Salix brachista HOM05D006547 ORTHO05D008112 1.5e-42 176.4 131 71.8
TAR365G0268 Trochodendron aralioides HOM05D006547 ORTHO05D008112 6.6e-30 134.4 127 62.2
Manes.01G229900 Manihot esculenta HOM05D006547 ORTHO05D008112 1.1e-27 127.1 136 57.4
Thecc.02G266700 Theobroma cacao HOM05D006547 ORTHO05D008112 1.4e-27 126.7 139 56.8
Duzib248G0337 Durio zibethinus HOM05D006547 ORTHO05D008112 6.8e-27 124.4 140 56.4
TAR362G1145 Trochodendron aralioides HOM05D006547 ORTHO05D008112 8.9e-27 124.0 139 56.8
Atru.chr5.966 Acer truncatum HOM05D006547 ORTHO05D008112 9.9e-26 120.6 148 56.1
TAR633G2779 Trochodendron aralioides HOM05D006547 ORTHO05D008112 1.7e-25 119.8 137 58.4
Glyma.20G175000 Glycine max HOM05D006547 ORTHO05D008112 2.2e-25 119.4 136 52.9
Gohir.A12G145800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 1.1e-24 117.1 119 58.0
Gohir.D12G150400 Gossypium hirsutum HOM05D006547 ORTHO05D008112 1.1e-24 117.1 119 58.0
Gorai.008G161900 Gossypium raimondii HOM05D006547 ORTHO05D008112 1.1e-24 117.1 119 58.0
Duzib251G0664 Durio zibethinus HOM05D006547 ORTHO05D008112 5.4e-24 114.8 124 57.3
Ciclev10022819m.g Citrus clementina HOM05D006547 ORTHO05D008112 7.1e-24 114.4 129 55.0
Glyma.10G217100 Glycine max HOM05D006547 ORTHO05D008112 1.2e-23 113.6 137 51.1
QL12p019056 Quercus lobata HOM05D006547 ORTHO05D008112 2.7e-23 112.5 142 50.7
Lj5g0010023 Lotus japonicus HOM05D006547 ORTHO05D008112 3.5e-23 112.1 137 50.4
CiPaw.07G119400 Carya illinoinensis HOM05D006547 ORTHO05D008112 6.0e-23 111.3 147 49.7
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 1.0e-22 110.5 140 53.6
Duzib268G0572 Durio zibethinus HOM05D006547 ORTHO05D008112 1.3e-22 110.2 131 53.4
Ca_10619_v3 Cicer arietinum L. HOM05D006547 ORTHO05D008112 2.3e-22 109.4 139 51.8
Hma1.2p1_0486F.1_g163490 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 3.0e-22 109.0 137 54.0
TWI36G0249 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 3.0e-22 109.0 144 55.6
CSS0011798 Camellia sinensis var. sinensis HOM05D006547 ORTHO05D008112 6.6e-22 107.8 104 63.5
COL.COLO4_23526 Corchorus olitorius HOM05D006547 ORTHO05D008112 8.6e-22 107.5 120 56.7
Manes.05G013600 Manihot esculenta HOM05D006547 ORTHO05D008112 2.5e-21 105.9 120 55.8
FAN26G3307 Fragaria x ananassa HOM05D006547 ORTHO05D008112 8.1e-20 100.9 142 49.3
FAN28G2331 Fragaria x ananassa HOM05D006547 ORTHO05D008112 1.8e-19 99.8 144 47.9
Phvul.007G089100 Phaseolus vulgaris HOM05D006547 ORTHO05D008112 4.0e-19 98.6 134 48.5
Medtr1g096530 Medicago truncatula HOM05D006547 ORTHO05D008112 6.8e-19 97.8 105 60.0
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 6.8e-19 97.8 85 62.4
Haze_05072 Corylus avellana HOM05D006547 ORTHO05D008112 8.9e-19 97.4 129 48.1
Cfa005764 Carpinus fangiana HOM05D006547 ORTHO05D008112 1.2e-18 97.1 144 51.4
Lalb_Chr03g0036161 Lupinus albus HOM05D006547 ORTHO05D008112 1.5e-18 96.7 103 52.4
TPR.G8830 Trifolium pratense HOM05D006547 ORTHO05D008112 1.5e-18 96.7 136 47.1
Cpa.g.sc18.81 Carica papaya HOM05D006547 ORTHO05D008112 2.0e-18 96.3 137 52.6
VMungo0720G0102 Vigna mungo HOM05D006547 ORTHO05D008112 2.6e-18 95.9 139 48.9
Lalb_Chr02g0141791 Lupinus albus HOM05D006547 ORTHO05D008112 4.4e-18 95.1 136 44.9
CiPaw.08G087700 Carya illinoinensis HOM05D006547 ORTHO05D008112 5.8e-18 94.7 128 53.1
FAN23G3047 Fragaria x ananassa HOM05D006547 ORTHO05D008112 5.8e-18 94.7 144 47.2
arahy.Tifrunner.gnm1.ann1.BQK7VT Arachis hypogaea HOM05D006547 ORTHO05D008112 1.3e-17 93.6 143 51.0
CAN.G1280.37 Capsicum annuum HOM05D006547 ORTHO05D008112 1.7e-17 93.2 99 55.6
RcHm_v2.0_Chr3g0487231 Rosa chinensis HOM05D006547 ORTHO05D008112 8.4e-17 90.9 142 46.5
FvH4_1g26990 Fragaria vesca HOM05D006547 ORTHO05D008112 1.4e-16 90.1 145 48.3
FAN19G2346 Fragaria x ananassa HOM05D006547 ORTHO05D008112 1.4e-16 90.1 145 48.3
Nitab4.5_0000363g0200 Nicotiana tabacum HOM05D006547 ORTHO05D008112 1.4e-16 90.1 128 50.0
TWI18G0834 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 1.4e-16 90.1 147 50.3
Gohir.D01G152800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 2.4e-16 89.4 102 52.9
Gohir.A01G157750 Gossypium hirsutum HOM05D006547 ORTHO05D008112 3.2e-16 89.0 82 61.0
Oeu008480.1 Olea europaea HOM05D006547 ORTHO05D008112 5.4e-16 88.2 147 46.3
Gorai.002G189200 Gossypium raimondii HOM05D006547 ORTHO05D008112 1.2e-15 87.0 102 52.0
DCAR_005744 Daucus carota HOM05D006547 ORTHO05D008112 2.1e-15 86.3 142 45.8
Rhsim13G0003400 Rhododendron simsii HOM05D006547 ORTHO05D008112 2.7e-15 85.9 108 49.1
Migut.D00065 Erythranthe guttata HOM05D006547 ORTHO05D008112 7.8e-15 84.3 108 50.0
MD17G1278000 Malus domestica HOM05D006547 ORTHO05D008112 1.3e-14 83.6 136 46.3
Nn4g25552 Nelumbo nucifera HOM05D006547 ORTHO05D008112 1.3e-14 83.6 111 48.6
MSTRG.21702 Avicennia marina HOM05D006547 ORTHO05D008112 3.0e-14 82.4 100 54.0
CAN.G293.16 Capsicum annuum HOM05D006547 ORTHO05D008112 3.9e-14 82.0 114 48.2
vmacro02389 Vaccinium macrocarpon HOM05D006547 ORTHO05D008112 3.9e-14 82.0 85 54.1
SGA_v2.0_scaffold334G49085 Striga asiatica HOM05D006547 ORTHO05D008112 5.1e-14 81.6 124 41.9
DCAR_002885 Daucus carota HOM05D006547 ORTHO05D008112 8.7e-14 80.9 104 55.8
Nitab4.5_0007407g0060 Nicotiana tabacum HOM05D006547 ORTHO05D008112 1.1e-13 80.5 63 66.7
Oeu044737.1 Olea europaea HOM05D006547 ORTHO05D008112 1.1e-13 80.5 86 53.5
PGSC0003DMG401007298 Solanum tuberosum HOM05D006547 ORTHO05D008112 1.9e-13 79.7 116 49.1
Peaxi162Scf00058g00236 Petunia axillaris HOM05D006547 ORTHO05D008112 2.5e-13 79.3 61 70.5
MBI18_g22340_MAGBIO Magnolia biondii HOM05D006547 ORTHO05D008112 4.3e-13 78.6 99 47.5
Prupe.3G008700 Prunus persica HOM05D006547 ORTHO05D008112 4.3e-13 78.6 129 47.3
SalBow3G4324 Salvia bowleyana HOM05D006547 ORTHO05D008112 4.3e-13 78.6 85 54.1
Actinidia25863 Actinidia chinensis HOM05D006547 ORTHO05D008112 7.3e-13 77.8 99 56.6
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 7.3e-13 77.8 125 44.0
MD09G1285300 Malus domestica HOM05D006547 ORTHO05D008112 9.6e-13 77.4 133 42.9
Lsat_1_v5_gn_9_4661 Lactuca sativa HOM05D006547 ORTHO05D008112 1.6e-12 76.6 139 39.6
Nn3g21744 Nelumbo nucifera HOM05D006547 ORTHO05D008112 2.1e-12 76.3 102 52.9
CANSAT25G1528 Cannabis sativa HOM05D006547 ORTHO05D008112 2.8e-12 75.9 51 76.5
MBI19_g03260_MAGBIO Magnolia biondii HOM05D001624 ORTHO05D001530 4.8e-12 75.1 99 49.5
EL10As5g23562 Beta vulgaris HOM05D006547 ORTHO05D008112 6.2e-12 74.7 85 58.8
Ciclev10006764m.g Citrus clementina HOM05D006547 ORTHO05D008112 6.2e-12 74.7 61 59.0
Carub.0004s3001 Capsella rubella HOM05D006547 ORTHO05D008112 8.1e-12 74.3 113 44.2
SGA_v2.0_scaffold376G50290 Striga asiatica HOM05D006547 ORTHO05D008112 8.1e-12 74.3 73 54.8
Solyc06g009510.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 1.1e-11 73.9 114 46.5
DCAR_012331 Daucus carota HOM05D006547 ORTHO05D008112 1.4e-11 73.6 92 48.9
CsaV3_3G026610 Cucumis sativus L. HOM05D006547 ORTHO05D008112 3.1e-11 72.4 51 64.7
Hma1.2p1_0408F.1_g146550 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 4.0e-11 72.0 84 53.6
Nitab4.5_0000222g0070 Nicotiana tabacum HOM05D006547 ORTHO05D008112 4.0e-11 72.0 59 62.7
AT2G47270 Arabidopsis thaliana HOM05D006547 ORTHO05D008112 5.3e-11 71.6 86 53.5
MELO3C012934.2 Cucumis melo HOM05D006547 ORTHO05D008112 5.3e-11 71.6 51 64.7
A05p00570 Brassica napus HOM05D006547 ORTHO05D008112 6.9e-11 71.2 89 49.4
BolC4t21695H Brassica oleracea HOM05D006547 ORTHO05D008112 6.9e-11 71.2 89 49.4
PSO761G0312 Papaver somniferum HOM05D006547 ORTHO05D008112 6.9e-11 71.2 125 39.2
CARHR142670 Cardamine hirsuta HOM05D006547 ORTHO05D008112 9.0e-11 70.9 89 50.6
ClCG10G011560 Citrullus lanatus HOM05D006547 ORTHO05D008112 9.0e-11 70.9 112 39.3
DCAR_018278 Daucus carota HOM05D006547 ORTHO05D008112 9.0e-11 70.9 141 35.5
ECA247G3592 Erigeron canadensis HOM05D006547 ORTHO05D008112 9.0e-11 70.9 68 58.8
Thhalv10001736m.g Eutrema salsugineum HOM05D006547 ORTHO05D008112 9.0e-11 70.9 113 41.6
Sopen06g004170 Solanum pennellii HOM05D006547 ORTHO05D008112 9.0e-11 70.9 110 46.4
PSO210G6541 Papaver somniferum HOM05D006547 ORTHO05D008112 1.2e-10 70.5 122 40.2
PGSC0003DMG400009058 Solanum tuberosum HOM05D006547 ORTHO05D008112 1.2e-10 70.5 110 42.7
AL302U10010 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 1.5e-10 70.1 86 52.3
AL4G46840 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 1.5e-10 70.1 86 52.3
Sopen01g031050 Solanum pennellii HOM05D006547 ORTHO05D008112 1.5e-10 70.1 110 43.6
BraA05t19055Z Brassica rapa HOM05D006547 ORTHO05D008112 2.0e-10 69.7 89 48.3
Sc17g0000340 Simmondsia chinensis HOM05D006547 ORTHO05D008112 2.0e-10 69.7 132 39.4
BcaB02g08786 Brassica carinata HOM05D006547 ORTHO05D008112 3.4e-10 68.9 86 47.7
BcaC01g05038 Brassica carinata HOM05D006547 ORTHO05D008112 3.4e-10 68.9 89 48.3
C03p30880 Brassica napus HOM05D006547 ORTHO05D008112 3.4e-10 68.9 89 48.3
BolC3t15440H Brassica oleracea HOM05D006547 ORTHO05D008112 3.4e-10 68.9 89 48.3
Solyc01g079270.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 3.4e-10 68.9 110 44.5
HanXRQChr15g0465071 Helianthus annuus HOM05D006547 ORTHO05D008112 4.4e-10 68.6 88 54.5
C04p00620 Brassica napus HOM05D006547 ORTHO05D008112 5.8e-10 68.2 86 50.0
Sc05g0000320 Simmondsia chinensis HOM05D006547 ORTHO05D008112 5.8e-10 68.2 76 51.3
Sp4g29240 Schrenkiella parvula HOM05D006547 ORTHO05D008112 7.6e-10 67.8 100 47.0
Aa31LG1G28590 Aethionema arabicum HOM05D006547 ORTHO05D008112 1.7e-09 66.6 92 47.8
BcaB01g03174 Brassica carinata HOM05D006547 ORTHO05D008112 1.7e-09 66.6 89 47.2
BcaB06g29454 Brassica carinata HOM05D006547 ORTHO05D008112 2.2e-09 66.2 90 47.8
C04p72660 Brassica napus HOM05D006547 ORTHO05D008112 2.2e-09 66.2 114 40.4
A04p34890 Brassica napus HOM05D006547 ORTHO05D008112 4.9e-09 65.1 90 45.6
BraSC79t46680Z Brassica rapa HOM05D006547 ORTHO05D008112 4.9e-09 65.1 90 45.6
THA.LOC104817451 Tarenaya hassleriana HOM05D006547 ORTHO05D008112 6.4e-09 64.7 98 44.9
HanXRQChr10g0285031 Helianthus annuus HOM05D006547 ORTHO05D008112 1.9e-08 63.2 142 33.8
Sed0005978 Sechium edule HOM05D024969 ORTHO05D025069 1.9e-08 63.2 143 36.4
Sed0017392 Sechium edule HOM05D006547 ORTHO05D008112 2.4e-08 62.8 104 43.3
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 7.1e-08 61.2 70 44.3
Gohir.A04G137350 Gossypium hirsutum HOM05D034510 ORTHO05D008112 9.3e-08 60.8 116 42.2
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 9.3e-08 60.8 93 35.5
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 1.2e-07 60.5 134 32.1
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 2.1e-07 59.7 93 33.3
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 2.1e-07 59.7 55 49.1
Gohir.D04G180550 Gossypium hirsutum HOM05D034510 ORTHO05D047560 3.5e-07 58.9 91 46.2
Gorai.012G173700 Gossypium raimondii HOM05D034510 ORTHO05D047560 3.5e-07 58.9 91 46.2
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 6.0e-07 58.2 55 43.6
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 6.0e-07 58.2 55 43.6
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 6.0e-07 58.2 54 44.4
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 1.3e-06 57.0 54 46.3
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.3e-06 57.0 54 40.7
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 1.3e-06 57.0 113 33.6
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.7e-06 56.6 54 40.7
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 2.3e-06 56.2 101 32.7
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 3.9e-06 55.5 89 33.7
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 5.1e-06 55.1 55 36.4
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 5.1e-06 55.1 54 38.9
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 6.6e-06 54.7 54 38.9
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 6.6e-06 54.7 54 38.9
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 6.6e-06 54.7 54 38.9
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 8.7e-06 54.3 54 38.9
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 8.7e-06 54.3 54 38.9


User provided reference genes

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