Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 4.7e-126 454.5 228 100.0
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 4.8e-102 374.8 228 82.9
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 9.6e-87 323.9 260 69.6
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 8.4e-83 310.8 247 70.0
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 2.4e-77 292.7 229 70.7
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 1.3e-75 287.0 226 64.6
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 2.5e-74 282.7 217 66.4
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 9.4e-74 280.8 194 69.6
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 1.6e-73 280.0 225 62.2
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 8.8e-72 274.2 221 62.4
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 1.1e-71 273.9 221 62.9
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 5.7e-71 271.6 199 68.3
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 7.4e-71 271.2 182 70.9
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 7.4e-71 271.2 228 61.4
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 9.7e-71 270.8 227 63.4
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 9.7e-71 270.8 227 63.4
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.7e-70 270.0 193 68.4
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 2.8e-70 269.2 185 70.8
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 2.8e-70 269.2 234 61.5
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 4.8e-70 268.5 224 62.5
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 4.8e-70 268.5 182 72.5
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 6.3e-70 268.1 223 61.4
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 8.2e-70 267.7 224 60.7
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 8.2e-70 267.7 223 63.2
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.1e-69 267.3 203 66.5
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.4e-69 266.9 158 77.8
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 1.4e-69 266.9 226 61.5
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 2.4e-69 266.2 146 83.6
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 3.1e-69 265.8 174 72.4
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 4.1e-69 265.4 230 60.4
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 6.9e-69 264.6 217 60.4
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 1.2e-68 263.8 224 60.7
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.2e-68 263.8 217 60.8
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 2.0e-68 263.1 178 70.2
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.0e-68 263.1 217 59.9
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 2.6e-68 262.7 230 61.3
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 3.4e-68 262.3 152 79.6
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 7.7e-68 261.2 233 60.5
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 1.0e-67 260.8 170 70.6
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 1.3e-67 260.4 224 62.9
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 1.3e-67 260.4 230 62.2
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.7e-67 260.0 232 59.9
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 2.2e-67 259.6 201 64.7
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 3.8e-67 258.8 214 63.1
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 5.0e-67 258.5 230 61.7
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 6.5e-67 258.1 211 63.5
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 1.1e-66 257.3 216 63.4
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 1.1e-66 257.3 170 69.4
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 1.4e-66 256.9 191 67.0
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.9e-66 256.5 227 58.1
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.9e-66 256.5 146 79.5
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.9e-66 256.5 219 61.2
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 3.2e-66 255.8 231 58.4
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 7.2e-66 254.6 255 55.7
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 7.2e-66 254.6 232 57.3
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 1.2e-65 253.8 226 61.9
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 1.2e-65 253.8 224 59.8
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 2.7e-65 252.7 172 67.4
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.7e-65 252.7 156 78.2
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 3.6e-65 252.3 225 62.7
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 3.6e-65 252.3 192 66.1
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 1.0e-64 250.8 227 59.9
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.0e-64 250.8 213 61.0
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 1.8e-64 250.0 213 61.5
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 1.8e-64 250.0 180 68.9
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 5.1e-64 248.4 224 58.5
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 6.7e-64 248.1 145 79.3
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.5e-63 246.9 209 63.2
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 2.6e-63 246.1 221 58.4
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 4.4e-63 245.4 216 59.7
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 9.7e-63 244.2 158 73.4
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 1.3e-62 243.8 216 57.9
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 1.7e-62 243.4 228 58.3
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 1.7e-62 243.4 196 61.2
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 6.3e-62 241.5 225 58.2
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 6.3e-62 241.5 201 63.7
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.1e-61 240.7 286 49.7
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.4e-61 240.4 147 74.1
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.4e-61 240.4 147 74.1
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 1.8e-61 240.0 238 54.2
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 4.1e-61 238.8 232 54.3
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 5.3e-61 238.4 226 54.9
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 5.3e-61 238.4 225 56.0
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 5.3e-61 238.4 223 57.0
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 9.1e-61 237.7 207 58.5
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.0e-60 236.5 192 62.5
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 5.9e-60 235.0 206 59.7
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 5.9e-60 235.0 138 78.3
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 1.3e-59 233.8 161 66.5
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.7e-59 233.4 209 58.9
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 6.5e-59 231.5 126 81.7
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 8.5e-59 231.1 149 70.5
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 1.1e-58 230.7 147 71.4
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.2e-58 229.2 287 47.7
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 4.2e-58 228.8 228 53.1
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 1.2e-57 227.3 140 72.1
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 1.2e-57 227.3 209 56.0
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 1.6e-57 226.9 140 73.6
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 1.6e-57 226.9 185 63.8
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 4.7e-57 225.3 149 70.5
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 2.3e-56 223.0 155 67.7
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 3.9e-56 222.2 181 61.3
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 2.6e-55 219.5 139 74.8
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 1.3e-54 217.2 213 56.8
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 2.2e-54 216.5 178 59.6
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 2.8e-54 216.1 131 74.0
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 4.1e-53 212.2 219 54.3
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 2.0e-52 209.9 151 61.6
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.6e-52 209.5 158 59.5
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 5.9e-52 208.4 267 46.8
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 1.0e-51 207.6 216 48.1
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 1.9e-50 203.4 194 53.6
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 3.2e-50 202.6 144 61.1
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 5.5e-50 201.8 143 62.2
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 2.1e-49 199.9 184 55.4
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 4.7e-49 198.7 166 57.8
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 6.1e-49 198.4 146 56.8
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 8.0e-49 198.0 146 57.5
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.0e-48 197.6 146 61.0
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.4e-48 197.2 221 47.1
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 2.3e-48 196.4 142 59.9
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 5.2e-48 195.3 146 56.2
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 5.2e-48 195.3 146 56.2
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 6.8e-48 194.9 146 56.2
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 6.8e-48 194.9 146 56.2
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 6.8e-48 194.9 137 69.3
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 2.6e-47 193.0 146 56.8
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 9.8e-47 191.0 109 78.0
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 8.3e-46 188.0 146 54.1
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 8.3e-46 188.0 146 54.1
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.1e-45 187.6 146 56.2
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.4e-45 187.2 146 54.1
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 1.8e-45 186.8 138 58.7
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 7.0e-45 184.9 230 50.0
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 1.3e-43 180.6 143 51.0
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 3.2e-42 176.0 224 47.8
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 1.6e-41 173.7 106 73.6
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 2.1e-41 173.3 164 56.7
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 3.0e-40 169.5 121 57.9
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 6.8e-40 168.3 125 60.8
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 5.7e-39 165.2 124 61.3
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.1e-37 161.0 138 55.8
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 7.7e-36 154.8 126 52.4
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 4.0e-32 142.5 148 44.6
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 4.0e-32 142.5 176 47.7
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 2.6e-31 139.8 150 54.0
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.2e-30 136.7 154 49.4
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 2.2e-30 136.7 89 69.7
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 6.3e-30 135.2 153 49.0
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 8.3e-30 134.8 157 48.4
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 9.2e-29 131.3 151 48.3
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 9.2e-29 131.3 146 39.0
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 7.8e-28 128.3 150 48.7
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 1.7e-27 127.1 152 44.7
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 6.6e-27 125.2 148 40.5
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 1.5e-26 124.0 64 82.8
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 2.5e-26 123.2 170 45.3
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 2.0e-23 113.6 65 75.4
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 1.1e-18 97.8 150 42.7
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 1.5e-15 87.4 55 76.4
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 2.0e-15 87.0 122 48.4
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 1.1e-13 81.3 85 49.4
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 1.3e-11 74.3 45 68.9
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 2.3e-11 73.6 43 69.8
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 2.3e-11 73.6 43 69.8
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 5.1e-11 72.4 117 41.0
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 6.6e-11 72.0 46 63.0
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 1.9e-10 70.5 109 38.5
BolC8t52839H Brassica oleracea HOM05D004068 ORTHO05D004700 1.7e-06 57.4 42 64.3


User provided reference genes

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