Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 3.3e-72 275.0 145 100.0
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 2.0e-61 239.2 145 84.8
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 2.5e-56 222.2 145 77.2
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 3.3e-56 221.9 145 76.6
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 3.6e-55 218.4 145 75.2
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 8.1e-55 217.2 145 75.9
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 8.1e-55 217.2 145 75.9
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 8.1e-55 217.2 145 78.6
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 1.4e-54 216.5 145 75.2
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 1.4e-54 216.5 145 75.2
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 3.1e-54 215.3 145 74.5
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 4.0e-54 214.9 145 73.8
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 4.0e-54 214.9 145 75.2
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 5.2e-54 214.5 145 74.5
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 5.2e-54 214.5 145 77.9
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 5.2e-54 214.5 145 79.3
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 6.8e-54 214.2 145 77.2
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 8.9e-54 213.8 145 79.3
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 8.9e-54 213.8 145 73.8
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 1.2e-53 213.4 145 74.5
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 1.2e-53 213.4 145 73.8
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 2.0e-53 212.6 148 72.3
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 2.0e-53 212.6 148 72.3
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 2.0e-53 212.6 148 72.3
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 2.0e-53 212.6 145 77.2
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 2.0e-53 212.6 145 74.5
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 2.6e-53 212.2 145 73.1
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 3.4e-53 211.8 147 74.8
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 4.4e-53 211.5 146 72.6
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 4.4e-53 211.5 150 71.3
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 5.8e-53 211.1 145 78.6
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 7.6e-53 210.7 145 71.7
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 7.6e-53 210.7 145 72.4
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 9.9e-53 210.3 145 71.0
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 1.3e-52 209.9 145 72.4
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 1.3e-52 209.9 143 73.4
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 1.7e-52 209.5 145 73.1
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 2.2e-52 209.1 145 71.7
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 2.2e-52 209.1 148 74.3
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 3.8e-52 208.4 147 75.5
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 4.9e-52 208.0 145 73.1
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 4.9e-52 208.0 145 73.1
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 6.4e-52 207.6 145 70.3
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 6.4e-52 207.6 145 72.4
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 8.4e-52 207.2 134 76.9
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 8.4e-52 207.2 145 72.4
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 8.4e-52 207.2 146 74.0
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 1.1e-51 206.8 146 79.5
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 1.1e-51 206.8 145 75.2
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 1.4e-51 206.5 152 73.0
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 1.4e-51 206.5 145 71.7
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 1.4e-51 206.5 149 71.1
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 1.9e-51 206.1 134 76.1
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 1.9e-51 206.1 147 72.1
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 2.4e-51 205.7 140 72.9
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 2.4e-51 205.7 146 76.7
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 3.2e-51 205.3 147 74.1
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 3.2e-51 205.3 141 73.0
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 4.1e-51 204.9 134 75.4
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 4.1e-51 204.9 145 70.3
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 5.4e-51 204.5 145 71.7
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 9.2e-51 203.8 145 76.6
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 1.2e-50 203.4 147 70.7
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 1.2e-50 203.4 145 70.3
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 1.6e-50 203.0 128 79.7
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 1.6e-50 203.0 145 70.3
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 1.6e-50 203.0 145 72.4
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 1.6e-50 203.0 145 73.8
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 2.1e-50 202.6 147 75.5
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 2.1e-50 202.6 148 77.7
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 2.1e-50 202.6 145 71.7
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 3.5e-50 201.8 146 74.7
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 3.5e-50 201.8 145 71.0
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 4.6e-50 201.4 148 70.3
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 6.0e-50 201.1 145 71.7
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 6.0e-50 201.1 146 69.9
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 7.8e-50 200.7 146 69.9
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 7.8e-50 200.7 145 70.3
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 7.8e-50 200.7 145 73.8
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 1.0e-49 200.3 146 74.0
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 1.3e-49 199.9 145 71.7
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 1.7e-49 199.5 147 70.1
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 1.7e-49 199.5 145 69.7
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 1.7e-49 199.5 149 70.5
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 1.7e-49 199.5 148 70.9
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 2.3e-49 199.1 145 70.3
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 2.3e-49 199.1 145 70.3
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 3.9e-49 198.4 145 69.0
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 5.1e-49 198.0 148 70.9
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 5.1e-49 198.0 148 70.9
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 6.6e-49 197.6 147 72.1
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 6.6e-49 197.6 148 68.9
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 8.7e-49 197.2 146 74.0
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 1.1e-48 196.8 145 72.4
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 3.3e-48 195.3 145 73.1
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 4.3e-48 194.9 145 69.0
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 4.3e-48 194.9 111 83.8
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 5.6e-48 194.5 145 69.7
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 9.6e-48 193.7 145 69.7
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 9.6e-48 193.7 147 74.1
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 9.6e-48 193.7 147 74.1
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.2e-47 193.4 149 69.8
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 1.2e-47 193.4 137 71.5
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.6e-47 193.0 145 69.0
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 1.6e-47 193.0 146 69.9
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 3.6e-47 191.8 147 73.5
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 1.1e-46 190.3 145 69.0
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.4e-46 189.9 142 69.7
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 4.0e-46 188.3 145 70.3
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 9.0e-46 187.2 170 60.0
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 1.2e-45 186.8 166 60.8
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.2e-45 186.8 117 76.9
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 1.2e-45 186.8 145 69.0
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 7.6e-45 184.1 110 78.2
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 4.9e-44 181.4 109 77.1
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 4.9e-44 181.4 145 66.2
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 6.4e-44 181.0 221 49.3
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.4e-43 179.1 115 76.5
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 2.4e-43 179.1 176 56.2
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 1.2e-42 176.8 144 63.9
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 2.7e-42 175.6 111 77.5
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.6e-39 166.4 206 51.0
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 1.8e-38 162.9 109 73.4
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 6.9e-38 161.0 92 83.7
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 6.9e-38 161.0 95 81.1
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 1.2e-37 160.2 90 85.6
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 2.0e-37 159.5 111 69.4
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 1.3e-36 156.8 88 84.1
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 6.4e-36 154.5 110 72.7
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 1.9e-32 142.9 98 78.6
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 4.3e-32 141.7 108 63.0
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 9.0e-30 134.0 112 67.0
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 1.5e-29 133.3 108 61.1
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 3.2e-27 125.6 146 58.9
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 7.9e-26 120.9 108 54.6
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 4.8e-23 111.7 63 90.5
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.2e-21 107.1 60 88.3
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 1.9e-19 99.8 81 55.6
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 1.9e-19 99.8 86 53.5
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 4.6e-18 95.1 101 52.5
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 6.9e-14 81.3 87 44.8
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 2.6e-13 79.3 114 40.4
A06p04970 Brassica napus HOM05D004802 ORTHO05D005591 4.5e-13 78.6 113 43.4
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 2.9e-12 75.9 63 60.3
A09p37440 Brassica napus HOM05D004802 ORTHO05D005591 1.8e-09 66.6 48 64.6
Haze_07453 Corylus avellana HOM05D004802 ORTHO05D005591 9.7e-08 60.8 35 85.7
Cfa024847 Carpinus fangiana HOM05D004802 ORTHO05D005591 1.7e-07 60.1 72 43.1
CSS0004783 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 4.8e-07 58.5 60 51.7
PRCOL_00002926 Prasinoderma coloniale HOM05D004802 ORTHO05D005591 1.4e-06 57.0 99 39.4
SHI01130 Sapria himalayana HOM05D004802 ORTHO05D005591 4.1e-06 55.5 56 55.4
BcaC02g11004 Brassica carinata HOM05D004802 ORTHO05D005591 5.3e-06 55.1 43 60.5
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 5.3e-06 55.1 43 60.5
RcHm_v2.0_Chr2g0130991 Rosa chinensis HOM05D004802 ORTHO05D005591 5.3e-06 55.1 68 45.6
A06p04960 Brassica napus HOM05D005594 ORTHO05D006403 9.1e-06 54.3 59 52.5


User provided reference genes

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