Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G183100 Populus trichocarpa HOM05D006232 ORTHO05D007746 1.3e-261 906.7 821 100.0
Potri.002G182900 Populus trichocarpa HOM05D006232 ORTHO05D007746 7.9e-256 887.5 821 96.7
Sabra02G0132400 Salix brachista HOM05D006232 ORTHO05D007746 3.4e-235 818.9 801 94.5
Manes.07G094000 Manihot esculenta HOM05D006232 ORTHO05D007746 6.0e-171 605.5 665 75.3
TWI59G0137 Tripterygium wilfordii HOM05D006232 ORTHO05D007746 2.4e-159 567.0 667 70.0
Thecc.01G330100 Theobroma cacao HOM05D006232 ORTHO05D007746 1.0e-146 525.0 640 72.0
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 2.6e-142 510.4 642 71.8
Atru.chr5.807 Acer truncatum HOM05D006232 ORTHO05D007746 4.2e-140 503.1 634 71.0
Gohir.D07G137500 Gossypium hirsutum HOM05D006232 ORTHO05D007746 6.2e-136 489.2 639 73.2
Gorai.001G149600 Gossypium raimondii HOM05D006232 ORTHO05D007746 6.2e-136 489.2 639 73.2
QL08p048137 Quercus lobata HOM05D006232 ORTHO05D007746 1.1e-135 488.4 636 70.8
CiPaw.11G045400 Carya illinoinensis HOM05D006232 ORTHO05D007746 2.6e-134 483.8 644 70.0
Gohir.A07G133100 Gossypium hirsutum HOM05D006232 ORTHO05D007746 2.6e-134 483.8 639 72.8
Actinidia23019 Actinidia chinensis HOM05D006232 ORTHO05D007746 2.3e-130 470.7 647 67.2
CSS0005474 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 2.6e-126 457.2 624 69.1
CSS0021551 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 4.5e-126 456.4 624 69.1
THA.LOC104801339 Tarenaya hassleriana HOM05D006232 ORTHO05D007746 1.3e-125 454.9 644 66.3
AL6G51770 Arabidopsis lyrata HOM05D006232 ORTHO05D007746 2.7e-123 447.2 627 68.7
Rhsim06G0114200 Rhododendron simsii HOM05D006232 ORTHO05D007746 4.6e-123 446.4 636 67.0
Thhalv10028437m.g Eutrema salsugineum HOM05D006232 ORTHO05D007746 5.1e-122 443.0 616 69.5
Haze_15770 Corylus avellana HOM05D006232 ORTHO05D007746 1.1e-121 441.8 637 68.3
Prupe.2G203600 Prunus persica HOM05D006232 ORTHO05D007746 2.5e-121 440.7 635 70.2
AT4G01570 Arabidopsis thaliana HOM05D006232 ORTHO05D007746 1.6e-120 438.0 629 68.2
Sp6g01480 Schrenkiella parvula HOM05D006232 ORTHO05D007746 1.1e-119 435.3 626 67.7
vmacro04311 Vaccinium macrocarpon HOM05D006232 ORTHO05D007746 1.1e-119 435.3 635 67.1
Eucgr.A00015 Eucalyptus grandis HOM05D006232 ORTHO05D007746 1.8e-119 434.5 638 67.9
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 2.0e-118 431.0 619 66.2
AUR62025831 Chenopodium quinoa HOM05D006232 ORTHO05D007746 2.0e-118 431.0 627 66.2
EL10Ac1g00635 Beta vulgaris HOM05D006232 ORTHO05D007746 2.6e-118 430.6 627 66.8
DCAR_015569 Daucus carota HOM05D006232 ORTHO05D007746 4.5e-118 429.9 644 63.7
Carub.0006s3563 Capsella rubella HOM05D006232 ORTHO05D007746 1.0e-117 428.7 627 68.1
Nn2g14420 Nelumbo nucifera HOM05D006232 ORTHO05D007746 1.1e-116 425.2 635 66.5
FAN03G0759 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.9e-116 424.5 627 65.7
FvH4_7g18170 Fragaria vesca HOM05D006232 ORTHO05D007746 2.5e-116 424.1 630 66.0
EL10Ac1g00638 Beta vulgaris HOM05D006232 ORTHO05D007746 3.2e-116 423.7 625 65.8
FAN06G0943 Fragaria x ananassa HOM05D006232 ORTHO05D007746 7.2e-116 422.5 617 67.1
Oeu062029.1 Olea europaea HOM05D006232 ORTHO05D007746 1.2e-115 421.8 630 49.8
PSO782G2059 Papaver somniferum HOM05D006232 ORTHO05D007746 3.6e-115 420.2 620 66.3
PGSC0003DMG400016173 Solanum tuberosum HOM05D006232 ORTHO05D007746 4.6e-115 419.9 629 50.7
Sc15g0005080 Simmondsia chinensis HOM05D006232 ORTHO05D007746 7.9e-115 419.1 630 67.3
FAN06G1608 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.0e-114 418.7 617 66.8
Nitab4.5_0001677g0020 Nicotiana tabacum HOM05D006232 ORTHO05D007746 1.8e-114 417.9 635 54.6
RcHm_v2.0_Chr1g0361811 Rosa chinensis HOM05D006232 ORTHO05D007746 6.7e-114 416.0 622 67.5
BcaB01g02134 Brassica carinata HOM05D006232 ORTHO05D007746 1.1e-113 415.2 642 53.6
Aa31LG5G1290 Aethionema arabicum HOM05D006232 ORTHO05D007746 2.6e-113 414.1 633 65.7
PGR092G0006 Punica granatum HOM05D006232 ORTHO05D007746 3.3e-113 413.7 618 69.4
Solyc11g008760.3 Solanum lycopersicum HOM05D006232 ORTHO05D007746 3.3e-113 413.7 633 48.8
Sopen11g004540 Solanum pennellii HOM05D006232 ORTHO05D007746 7.4e-113 412.5 633 49.1
MBI12_g26899_MAGBIO Magnolia biondii HOM05D006232 ORTHO05D007746 2.8e-112 410.6 624 69.6
Cc09_g04270 Coffea canephora HOM05D006232 ORTHO05D007746 1.8e-111 407.9 622 53.2
CARHR250090 Cardamine hirsuta HOM05D006232 ORTHO05D007746 4.1e-111 406.8 628 66.9
FAN10G2312 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.2e-110 405.2 630 59.7
SHI19982 Sapria himalayana HOM05D006232 ORTHO05D007746 2.0e-110 404.4 659 62.5
MSTRG.8185 Avicennia marina HOM05D006232 ORTHO05D007746 4.5e-110 403.3 657 50.7
Cpa.g.sc314.5 Carica papaya HOM05D006232 ORTHO05D007746 5.9e-110 402.9 634 64.5
BcaC04g24085 Brassica carinata HOM05D006232 ORTHO05D007746 9.4e-108 395.6 631 56.9
Lalb_Chr15g0076621 Lupinus albus HOM05D006232 ORTHO05D007746 9.4e-108 395.6 618 65.9
MELO3C022296.2 Cucumis melo HOM05D006232 ORTHO05D007746 1.0e-106 392.1 630 67.8
SGA_v2.0_scaffold153G36899 Striga asiatica HOM05D006232 ORTHO05D007315 8.8e-106 389.0 635 56.5
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 2.6e-105 387.5 666 60.4
CSS0047958 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 9.7e-105 385.6 636 63.2
arahy.Tifrunner.gnm1.ann1.E4FCEH Arachis hypogaea HOM05D006232 ORTHO05D007746 1.6e-102 378.3 635 60.9
arahy.Tifrunner.gnm1.ann1.YGP4KT Arachis hypogaea HOM05D006232 ORTHO05D007746 5.9e-102 376.3 633 61.9
Sed0020235 Sechium edule HOM05D006232 ORTHO05D007746 3.8e-101 373.6 625 66.4
Phvul.011G061000 Phaseolus vulgaris HOM05D006232 ORTHO05D007746 4.2e-100 370.2 614 45.6
CAN.G691.16 Capsicum annuum HOM05D006232 ORTHO05D007746 5.5e-100 369.8 635 45.2
arahy.Tifrunner.gnm1.ann1.NHK9RM Arachis hypogaea HOM05D006232 ORTHO05D007746 1.6e-99 368.2 634 43.1
Glyma.11G135300 Glycine max HOM05D006232 ORTHO05D007746 1.4e-98 365.2 614 62.9
VMungo1127G1689 Vigna mungo HOM05D006232 ORTHO05D007746 1.4e-98 365.2 614 62.7
C09p01210 Brassica napus HOM05D006232 ORTHO05D007746 6.3e-96 356.3 628 52.5
BolC9t53055H Brassica oleracea HOM05D006232 ORTHO05D007746 9.1e-95 352.4 641 51.3
Lj1g0009831 Lotus japonicus HOM05D006232 ORTHO05D007746 7.7e-94 349.4 631 60.5
Migut.F01833 Erythranthe guttata HOM05D006232 ORTHO05D007746 1.9e-92 344.7 677 38.8
A09p01130 Brassica napus HOM05D006232 ORTHO05D007746 2.5e-92 344.4 641 52.9
FAN01G1185 Fragaria x ananassa HOM05D006232 ORTHO05D007746 2.7e-91 340.9 603 63.2
SalBow8G3454 Salvia bowleyana HOM05D006232 ORTHO05D007746 1.8e-90 338.2 633 38.1
BraA09t35784Z Brassica rapa HOM05D006232 ORTHO05D007746 3.0e-90 337.4 640 52.0
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 2.4e-87 327.8 639 62.6
MD01G1097600 Malus domestica HOM05D006232 ORTHO05D007746 7.0e-87 326.2 463 52.9
Nitab4.5_0000743g0190 Nicotiana tabacum HOM05D006232 ORTHO05D007746 5.0e-85 320.1 531 55.2
Medtr7g016910 Medicago truncatula HOM05D006232 ORTHO05D007746 2.5e-84 317.8 641 59.1
Dinv01552 Davidia involucrata HOM05D006232 ORTHO05D007746 6.1e-83 313.2 302 55.6
Psat3g203240 Pisum sativum HOM05D006232 ORTHO05D007746 8.8e-82 309.3 628 59.6
TPR.G23396 Trifolium pratense HOM05D006232 ORTHO05D007746 1.5e-81 308.5 632 59.5
MD01G1096200 Malus domestica HOM05D006232 ORTHO05D007746 1.7e-80 305.1 503 69.0
TAR371G0213 Trochodendron aralioides HOM05D006232 ORTHO05D007746 3.7e-80 303.9 303 59.7
Ciclev10023806m.g Citrus clementina HOM05D006232 ORTHO05D007746 6.3e-80 303.1 267 58.4
arahy.Tifrunner.gnm1.ann1.MJ9C76 Arachis hypogaea HOM05D006232 ORTHO05D007746 1.0e-77 295.8 499 68.5
ECA247G0464 Erigeron canadensis HOM05D006232 ORTHO05D007746 1.6e-75 288.5 530 63.8
CSS0030017 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 4.6e-70 270.4 423 77.3
COL.COLO4_23076 Corchorus olitorius HOM05D006232 ORTHO05D007746 1.0e-66 259.2 640 43.1
Lsat_1_v5_gn_4_109581 Lactuca sativa HOM05D006232 ORTHO05D007746 3.1e-66 257.7 637 54.3
Peaxi162Scf00254g00041 Petunia axillaris HOM05D006232 ORTHO05D007746 5.2e-66 256.9 563 42.6
Peaxi162Scf00890g00001 Petunia axillaris HOM05D006232 ORTHO05D007746 5.4e-63 246.9 563 43.9
Ca_06909_v3 Cicer arietinum L. HOM05D006232 ORTHO05D007746 9.2e-63 246.1 417 74.3
ATR0684G123 Amborella trichopoda HOM05D006232 ORTHO05D007746 1.7e-61 241.9 607 55.5
MD01G1095900 Malus domestica HOM05D006232 ORTHO05D007746 1.6e-59 235.3 172 70.3
GSVIVG01010456001 Vitis vinifera HOM05D006232 ORTHO05D007746 2.1e-59 235.0 169 72.2
SGA_v2.0_scaffold83G26365 Striga asiatica HOM05D006232 ORTHO05D007746 2.8e-59 234.6 306 45.1
TAR371G1107 Trochodendron aralioides HOM05D006232 ORTHO05D007746 2.3e-58 231.5 177 67.2
FAN10G2235 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.4e-55 222.2 175 63.4
Nn6g33415 Nelumbo nucifera HOM05D006232 ORTHO05D007746 4.3e-44 184.1 161 58.4
CsaV3_6G008430 Cucumis sativus L. HOM05D006232 ORTHO05D007746 1.6e-43 182.2 619 50.9
HanXRQChr09g0270591 Helianthus annuus HOM05D006232 ORTHO05D007746 8.9e-42 176.4 167 56.3
Zm00001eb055010 Zea mays HOM05D006232 ORTHO05D007746 4.9e-40 170.6 430 50.2
Hma1.2p1_0074F.1_g038910 Hydrangea macrophylla HOM05D006232 ORTHO05D007746 3.2e-39 167.9 340 78.2
HPP92_002273 Vanilla planifolia HOM05D006232 ORTHO05D007746 3.5e-38 164.5 169 51.5
Hund17178 Selenicereus undatus HOM05D006232 ORTHO05D007746 9.6e-36 156.4 174 50.0
Os03g0712900 Oryza sativa ssp. japonica HOM05D006232 ORTHO05D007746 9.0e-34 149.8 169 47.3
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 3.3e-28 131.3 136 55.1
SEGI_19483 Sequoiadendron giganteum HOM05D006232 ORTHO05D007746 1.8e-26 125.6 233 36.9
MD01G1096300 Malus domestica HOM05D006232 ORTHO05D007746 7.6e-25 120.2 76 77.6
unitig_62.g23853 Utricularia gibba HOM05D006232 ORTHO05D007746 3.8e-24 117.9 209 35.4
unitig_64.g29781 Utricularia gibba HOM05D006232 ORTHO05D007746 3.8e-24 117.9 209 35.4
Lj1P725T29 Lonicera japonica HOM05D006232 ORTHO05D007746 2.1e-22 112.1 108 54.6
Dinv01553 Davidia involucrata HOM05D006232 ORTHO05D007746 2.7e-22 111.7 76 73.7
CAN.G691.7 Capsicum annuum HOM05D006232 ORTHO05D007746 1.1e-15 89.7 147 44.2
Sc02g0005770 Simmondsia chinensis HOM05D006232 ORTHO05D007746 3.2e-15 88.2 121 48.8
Lj1P725T28 Lonicera japonica HOM05D006232 ORTHO05D007746 8.7e-13 80.1 44 86.4
CAN.G395.52 Capsicum annuum HOM05D006232 ORTHO05D007746 1.6e-11 75.9 95 42.1
CAN.G395.53 Capsicum annuum HOM05D006232 ORTHO05D007746 2.8e-11 75.1 39 89.7
MD01G1131700 Malus domestica HOM05D006232 ORTHO05D007746 6.3e-11 73.9 46 78.3
ECA238G2420 Erigeron canadensis HOM05D006596 ORTHO05D008497 2.6e-09 68.6 276 21.7
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 1.9e-07 62.4 143 26.6
SGA_v2.0_scaffold62G21537 Striga asiatica HOM05D006999 ORTHO05D008936 1.9e-07 62.4 250 25.6
Dinv39939 Davidia involucrata HOM05D006999 ORTHO05D008936 2.5e-07 62.0 300 23.3
SGA_v2.0_scaffold73G24233 Striga asiatica HOM05D000424 ORTHO05D000355 2.5e-07 62.0 290 24.1
CSS0003698 Camellia sinensis var. sinensis HOM05D006999 ORTHO05D008936 4.2e-07 61.2 247 23.5
CSS0009159 Camellia sinensis var. sinensis HOM05D006999 ORTHO05D008936 4.2e-07 61.2 247 23.5
Rhsim06G0202600 Rhododendron simsii HOM05D000424 ORTHO05D000355 7.2e-07 60.5 299 20.7
Nn5g29479 Nelumbo nucifera HOM05D006999 ORTHO05D008936 9.3e-07 60.1 254 24.0
Atru.chr2.2410 Acer truncatum HOM05D000424 ORTHO05D000355 1.2e-06 59.7 320 20.9
Aqoxy4G00696 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 1.2e-06 59.7 269 21.2
BcaC01g01238 Brassica carinata HOM05D006232 ORTHO05D007746 1.6e-06 59.3 48 60.4
BcaC06g36288 Brassica carinata HOM05D006556 ORTHO05D008146 4.6e-06 57.8 258 24.0
Cpa.g.sc15.132 Carica papaya HOM05D006999 ORTHO05D008936 6.1e-06 57.4 283 21.2
SGA_v2.0_scaffold8G04573 Striga asiatica HOM05D000424 ORTHO05D002854 6.1e-06 57.4 262 21.8
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 7.9e-06 57.0 262 21.0
SalBow1G0035 Salvia bowleyana HOM05D006999 ORTHO05D008936 7.9e-06 57.0 257 24.1


User provided reference genes

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