Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G179600 Populus trichocarpa HOM05D002391 ORTHO05D004870 0.0e+00 1473.0 764 100.0
Sabra02G0134300 Salix brachista HOM05D002391 ORTHO05D004870 0.0e+00 1439.5 762 97.8
Manes.01G239800 Manihot esculenta HOM05D002391 ORTHO05D004870 0.0e+00 1281.9 742 89.8
CsaV3_6G008330 Cucumis sativus L. HOM05D002391 ORTHO05D004870 0.0e+00 1259.2 765 85.5
MELO3C022305.2 Cucumis melo HOM05D002391 ORTHO05D004870 0.0e+00 1254.6 765 85.1
ClCG06G002280 Citrullus lanatus HOM05D002391 ORTHO05D004870 0.0e+00 1251.5 765 85.0
Sed0000252 Sechium edule HOM05D002391 ORTHO05D004870 0.0e+00 1244.6 765 84.6
TWI59G0940 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 0.0e+00 1240.3 740 86.8
COL.COLO4_31148 Corchorus olitorius HOM05D002391 ORTHO05D004870 0.0e+00 1237.6 762 84.0
CANSAT56G4423 Cannabis sativa HOM05D002391 ORTHO05D004870 0.0e+00 1234.9 762 84.0
Cfa003734 Carpinus fangiana HOM05D002391 ORTHO05D004870 0.0e+00 1234.9 738 86.2
Haze_15735 Corylus avellana HOM05D002391 ORTHO05D004870 0.0e+00 1232.6 738 85.9
TWI14G1409 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 0.0e+00 1228.8 763 84.1
CiPaw.01G082500 Carya illinoinensis HOM05D002391 ORTHO05D004870 0.0e+00 1226.8 741 85.2
Duzib235G0384 Durio zibethinus HOM05D002391 ORTHO05D004870 0.0e+00 1225.7 762 83.2
Atru.chr5.768 Acer truncatum HOM05D002391 ORTHO05D004870 0.0e+00 1223.8 762 83.2
CANSAT56G4076 Cannabis sativa HOM05D002391 ORTHO05D004870 0.0e+00 1218.4 759 83.1
TAR629G2316 Trochodendron aralioides HOM05D002391 ORTHO05D004870 0.0e+00 1211.8 736 85.7
Actinidia08007 Actinidia chinensis HOM05D002391 ORTHO05D004870 0.0e+00 1210.7 737 84.9
Ciclev10018998m.g Citrus clementina HOM05D002391 ORTHO05D004870 0.0e+00 1209.5 736 84.9
Gorai.005G122300 Gossypium raimondii HOM05D002391 ORTHO05D004870 0.0e+00 1205.7 741 83.8
Sp6g01350 Schrenkiella parvula HOM05D002391 ORTHO05D004870 0.0e+00 1203.7 745 82.7
QL08p047248 Quercus lobata HOM05D002391 ORTHO05D004870 0.0e+00 1203.0 760 82.8
FAN03G0415 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1202.2 732 84.6
FAN06G0341 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1200.3 732 84.3
arahy.Tifrunner.gnm1.ann1.SI3K9E Arachis hypogaea HOM05D002391 ORTHO05D004870 0.0e+00 1199.5 734 84.2
FAN10G4291 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1199.5 732 84.4
FAN10G1672 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1199.1 732 84.4
Gohir.A02G090600 Gossypium hirsutum HOM05D002391 ORTHO05D004870 0.0e+00 1198.7 741 83.4
arahy.Tifrunner.gnm1.ann1.E8X9SV Arachis hypogaea HOM05D002391 ORTHO05D004870 0.0e+00 1198.3 734 84.2
FAN06G0379 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1198.3 732 84.2
FvH4_7g17670 Fragaria vesca HOM05D002391 ORTHO05D004870 0.0e+00 1197.2 732 84.2
A03p31630 Brassica napus HOM05D002391 ORTHO05D004870 0.0e+00 1196.8 765 80.5
Thhalv10028369m.g Eutrema salsugineum HOM05D002391 ORTHO05D004870 0.0e+00 1196.4 745 81.7
FAN01G3049 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1196.0 732 84.0
Thecc.06G056400 Theobroma cacao HOM05D002391 ORTHO05D004870 0.0e+00 1196.0 762 81.6
BraA03t12339Z Brassica rapa HOM05D002391 ORTHO05D004870 0.0e+00 1195.6 765 80.4
Aa31LG5G1170 Aethionema arabicum HOM05D002391 ORTHO05D004870 0.0e+00 1195.3 731 82.6
vmacro13188 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 0.0e+00 1194.9 763 82.0
Nn2g14439 Nelumbo nucifera HOM05D002391 ORTHO05D004870 0.0e+00 1194.5 737 83.6
C03p38630 Brassica napus HOM05D002391 ORTHO05D004870 0.0e+00 1192.9 765 80.1
BolC3t16136H Brassica oleracea HOM05D002391 ORTHO05D004870 0.0e+00 1192.9 765 80.1
Gorai.010G141700 Gossypium raimondii HOM05D002391 ORTHO05D004870 0.0e+00 1191.4 746 81.9
Dinv31611 Davidia involucrata HOM05D002391 ORTHO05D004870 0.0e+00 1191.0 762 81.8
Gohir.D06G121400 Gossypium hirsutum HOM05D002391 ORTHO05D004870 0.0e+00 1189.9 746 81.8
Lalb_Chr18g0044711 Lupinus albus HOM05D002391 ORTHO05D004870 0.0e+00 1189.1 730 84.1
CARHR250280 Cardamine hirsuta HOM05D002391 ORTHO05D004870 0.0e+00 1187.9 742 81.7
Prupe.2G197800 Prunus persica HOM05D002391 ORTHO05D004870 0.0e+00 1187.2 734 83.1
AL6G52005 Arabidopsis lyrata HOM05D002391 ORTHO05D004870 0.0e+00 1186.8 733 82.0
THA.LOC104815894 Tarenaya hassleriana HOM05D002391 ORTHO05D004870 0.0e+00 1186.0 731 82.4
Prupe.2G092100 Prunus persica HOM05D002391 ORTHO05D004870 0.0e+00 1184.9 733 83.5
Hma1.2p1_0074F.1_g038740 Hydrangea macrophylla HOM05D002391 ORTHO05D004870 0.0e+00 1182.9 745 82.7
Eucgr.B02196 Eucalyptus grandis HOM05D002391 ORTHO05D004870 0.0e+00 1178.3 746 82.0
PGR031G3302 Punica granatum HOM05D002391 ORTHO05D004870 0.0e+00 1177.9 740 82.8
Aqoxy5G01515 Aquilegia oxysepala HOM05D002391 ORTHO05D004870 0.0e+00 1177.2 727 84.6
Carub.0006s3580 Capsella rubella HOM05D002391 ORTHO05D004870 0.0e+00 1177.2 743 80.8
AT4G01395 Arabidopsis thaliana HOM05D002391 ORTHO05D004870 0.0e+00 1175.2 743 80.9
Phvul.009G254600 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 0.0e+00 1172.5 738 82.5
VMungo1309G1994 Vigna mungo HOM05D002391 ORTHO05D004870 0.0e+00 1172.5 738 82.1
VMungo1309G0406 Vigna mungo HOM05D002391 ORTHO05D004870 0.0e+00 1171.8 738 82.1
TPR.G4730 Trifolium pratense HOM05D002391 ORTHO05D004870 0.0e+00 1171.0 769 79.7
Glyma.03G261100 Glycine max HOM05D002391 ORTHO05D004870 0.0e+00 1170.2 730 83.2
Psat0s3525g0040 Pisum sativum HOM05D002391 ORTHO05D004870 0.0e+00 1169.1 751 81.6
Lj5g0026855 Lotus japonicus HOM05D002391 ORTHO05D004870 0.0e+00 1167.9 730 82.6
Phvul.009G257900 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 0.0e+00 1167.1 738 82.4
Dinv32645 Davidia involucrata HOM05D002391 ORTHO05D004870 0.0e+00 1165.6 744 82.0
Ca_09546_v3 Cicer arietinum L. HOM05D002391 ORTHO05D004870 0.0e+00 1162.9 735 82.3
Lsat_1_v5_gn_4_41841 Lactuca sativa HOM05D002391 ORTHO05D004870 0.0e+00 1161.7 737 81.5
Glyma.19G260100 Glycine max HOM05D002391 ORTHO05D004870 0.0e+00 1161.4 730 82.5
Medtr7g118220 Medicago truncatula HOM05D002391 ORTHO05D004870 0.0e+00 1156.7 744 81.5
BcaC01g06822 Brassica carinata HOM05D002391 ORTHO05D004870 0.0e+00 1153.3 740 79.9
Lsat_1_v5_gn_3_17681 Lactuca sativa HOM05D002391 ORTHO05D004870 0.0e+00 1150.6 737 80.5
Migut.B01922 Erythranthe guttata HOM05D002391 ORTHO05D004870 0.0e+00 1144.8 739 81.1
CAN.G585.49 Capsicum annuum HOM05D002391 ORTHO05D004870 0.0e+00 1140.2 739 80.1
MD07G1159900 Malus domestica HOM05D002391 ORTHO05D004870 0.0e+00 1137.9 734 81.2
Sopen07g029360 Solanum pennellii HOM05D002391 ORTHO05D004870 0.0e+00 1137.9 737 80.2
CAN.G1209.27 Capsicum annuum HOM05D002391 ORTHO05D004870 0.0e+00 1136.7 737 80.2
Solyc07g056010.3 Solanum lycopersicum HOM05D002391 ORTHO05D004870 0.0e+00 1136.7 737 80.2
Hund24710 Selenicereus undatus HOM05D002391 ORTHO05D004870 0.0e+00 1135.6 732 79.9
Gohir.D02G107800 Gossypium hirsutum HOM05D002391 ORTHO05D004870 0.0e+00 1135.2 741 80.2
PGSC0003DMG401031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 0.0e+00 1135.2 737 80.1
MSTRG.17383 Avicennia marina HOM05D002391 ORTHO05D004870 0.0e+00 1134.4 739 79.4
PSO017G7365 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1132.1 764 77.7
HanXRQChr16g0520851 Helianthus annuus HOM05D002391 ORTHO05D004870 0.0e+00 1131.7 739 79.4
PSO339G3919 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1129.8 764 77.7
PSO170G3053 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1129.4 764 77.5
Peaxi162Scf00028g00124 Petunia axillaris HOM05D002391 ORTHO05D004870 0.0e+00 1129.4 738 80.9
SGA_v2.0_scaffold12G06269 Striga asiatica HOM05D002391 ORTHO05D004870 0.0e+00 1128.2 749 78.8
SalBow3G2598 Salvia bowleyana HOM05D002391 ORTHO05D004870 0.0e+00 1116.7 755 78.4
SalBow3G4592 Salvia bowleyana HOM05D002391 ORTHO05D004870 0.0e+00 1116.7 755 78.4
DCAR_032252 Daucus carota HOM05D002391 ORTHO05D004870 0.0e+00 1114.4 753 78.4
Ah.08g211620 Amaranthus hybridus HOM05D002391 ORTHO05D004870 0.0e+00 1104.4 755 75.8
Nitab4.5_0003682g0020 Nicotiana tabacum HOM05D002391 ORTHO05D004870 0.0e+00 1103.6 711 80.3
CDE11G0036 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 0.0e+00 1098.2 748 75.3
Lj9A607T84 Lonicera japonica HOM05D002391 ORTHO05D004870 0.0e+00 1078.5 707 79.5
ATR0697G195 Amborella trichopoda HOM05D002391 ORTHO05D004870 5.2e-312 1073.5 763 72.5
Sc20g0005510 Simmondsia chinensis HOM05D002391 ORTHO05D004870 5.2e-312 1073.5 762 73.4
MBI12_g09288_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 3.7e-311 1071.2 768 74.6
Lalb_Chr15g0076531 Lupinus albus HOM05D002391 ORTHO05D004870 1.4e-307 1059.3 739 74.6
HPP92_001559 Vanilla planifolia HOM05D002391 ORTHO05D004870 2.4e-307 1058.5 730 73.3
SEGI_26155 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 2.7e-306 1055.0 737 72.3
ECA234G3070 Erigeron canadensis HOM05D002391 ORTHO05D004870 4.5e-306 1054.3 751 73.1
SEGI_23282 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 3.6e-303 1044.6 737 71.5
EL10Ac7g16621 Beta vulgaris HOM05D002391 ORTHO05D004870 4.1e-299 1031.2 779 70.2
Nitab4.5_0003729g0040 Nicotiana tabacum HOM05D002391 ORTHO05D004870 2.7e-298 1028.5 724 75.8
GSVIVG01027440001 Vitis vinifera HOM05D002391 ORTHO05D004870 7.7e-298 1026.9 736 74.5
AUR62042494 Chenopodium quinoa HOM05D002391 ORTHO05D004870 3.1e-291 1005.0 665 77.7
Cc06_g20470 Coffea canephora HOM05D002391 ORTHO05D004870 1.9e-288 995.7 733 73.0
unitig_899.g15596 Utricularia gibba HOM05D002391 ORTHO05D004870 1.9e-288 995.7 697 75.2
AUR62040015 Chenopodium quinoa HOM05D002391 ORTHO05D004870 6.8e-286 987.3 663 76.5
ECA234G2472 Erigeron canadensis HOM05D002391 ORTHO05D004870 1.7e-284 982.6 727 70.0
Oeu007915.2 Olea europaea HOM05D002391 ORTHO05D004870 2.0e-269 932.6 748 68.2
Mapoly0151s0016 Marchantia polymorpha HOM05D002391 ORTHO05D004870 1.3e-257 893.3 730 61.9
Manes.05G016350 Manihot esculenta HOM05D002391 ORTHO05D004870 1.1e-256 890.2 730 70.0
BcaB05g23972 Brassica carinata HOM05D002391 ORTHO05D004870 2.4e-251 872.5 743 64.7
Pp3c17_20140 Physcomitrium patens HOM05D002391 ORTHO05D004870 2.4e-251 872.5 756 60.1
SMO364G0412 Selaginella moellendorffii HOM05D002391 ORTHO05D004870 3.5e-250 868.6 732 61.9
Gohir.A06G116700 Gossypium hirsutum HOM05D002391 ORTHO05D004870 3.3e-248 862.1 578 77.5
unitig_21.g20038 Utricularia gibba HOM05D002391 ORTHO05D004870 3.5e-234 815.5 655 66.3
MD07G1159800 Malus domestica HOM05D002391 ORTHO05D004870 6.7e-233 811.2 521 81.2
CBR_g6290 Chara braunii HOM05D002391 ORTHO05D004870 8.2e-215 751.1 867 48.4
Rhsim07G0007000 Rhododendron simsii HOM05D002391 ORTHO05D004870 3.1e-214 749.2 551 73.1
RcHm_v2.0_Chr1g0334511 Rosa chinensis HOM05D002391 ORTHO05D004870 2.0e-213 746.5 434 88.7
TAR636G0053 Trochodendron aralioides HOM05D002391 ORTHO05D004870 1.7e-188 663.7 386 88.9
PSO302G0149 Papaver somniferum HOM05D002391 ORTHO05D004870 1.1e-182 644.4 412 78.9
A03p50140 Brassica napus HOM05D002391 ORTHO05D004870 6.8e-169 598.6 391 79.0
MD07G1159700 Malus domestica HOM05D002391 ORTHO05D004870 6.4e-167 592.0 330 91.2
Carub.0003s2971 Capsella rubella HOM05D002391 ORTHO05D004870 1.6e-162 577.4 762 47.0
AagrBONN_evm.TU.Sc2ySwM_344.5215 Anthoceros agrestis HOM05D002391 ORTHO05D004870 6.2e-162 575.5 532 57.0
Os02g0456000 Oryza sativa ssp. japonica HOM05D002391 ORTHO05D004870 2.0e-160 570.5 555 56.8
CDE02G1610 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 2.1e-157 560.5 736 47.3
Zm00001eb402340 Zea mays HOM05D002391 ORTHO05D004870 7.5e-152 542.0 566 54.1
CAN.G732.5 Capsicum annuum HOM05D002391 ORTHO05D004870 2.9e-143 513.5 358 76.0
Zm00001eb005370 Zea mays HOM05D002391 ORTHO05D004870 1.6e-141 507.7 535 53.8
vmacro23330 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 1.4e-137 494.6 328 79.6
PRCOL_00002903 Prasinoderma coloniale HOM05D002391 ORTHO05D004870 1.5e-131 474.6 741 38.5
TAR636G3264 Trochodendron aralioides HOM05D002391 ORTHO05D004870 6.9e-129 465.7 316 78.2
Cre06.g287250 Chlamydomonas reinhardtii HOM05D002391 ORTHO05D004870 1.5e-123 448.0 834 33.3
vmacro13197 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 5.8e-120 436.0 497 55.1
BraA03t14107Z Brassica rapa HOM05D002391 ORTHO05D004870 5.1e-116 422.9 272 79.8
A05p28430 Brassica napus HOM05D002391 ORTHO05D004870 1.9e-115 421.0 272 79.8
BraA05t21723Z Brassica rapa HOM05D002391 ORTHO05D004870 2.4e-113 414.1 272 79.0
DCAR_022118 Daucus carota HOM05D002391 ORTHO05D004870 7.6e-112 409.1 332 69.3
RcHm_v2.0_Chr1g0334501 Rosa chinensis HOM05D002391 ORTHO05D004870 1.4e-110 404.8 276 76.4
Cpa.g.sc193.14 Carica papaya HOM05D002391 ORTHO05D004870 2.8e-106 390.6 209 93.8
A08p28600 Brassica napus HOM05D002391 ORTHO05D004870 8.5e-103 379.0 231 82.7
BraA02t04916Z Brassica rapa HOM05D002391 ORTHO05D004870 3.6e-101 373.6 228 82.5
BraA02t08770Z Brassica rapa HOM05D002391 ORTHO05D004870 3.6e-101 373.6 228 82.5
MBI12_g48127_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 3.7e-98 363.6 427 53.6
A07p33310 Brassica napus HOM05D002391 ORTHO05D004870 4.2e-94 350.1 210 83.8
PGSC0003DMG402031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 1.7e-90 338.2 184 90.8
CAN.G732.6 Capsicum annuum HOM05D002391 ORTHO05D004870 3.1e-89 334.0 190 87.9
FvH4_4g00571 Fragaria vesca HOM05D002391 ORTHO05D004870 8.6e-55 219.5 149 75.8
Dinv08357 Davidia involucrata HOM05D002391 ORTHO05D004870 5.2e-52 210.3 187 61.5
C02p38430 Brassica napus HOM05D002391 ORTHO05D017667 2.0e-51 208.4 163 68.1
HanXRQChr05g0132281 Helianthus annuus HOM05D002391 ORTHO05D004870 3.4e-51 207.6 123 83.7
FvH4_5g29942 Fragaria vesca HOM05D002391 ORTHO05D017667 1.2e-48 199.1 215 55.3
Actinidia33035 Actinidia chinensis HOM05D002391 ORTHO05D004870 3.9e-47 194.1 122 82.8
BolC2t09861H Brassica oleracea HOM05D002391 ORTHO05D017667 2.6e-43 181.4 131 72.5
BcaC03g16083 Brassica carinata HOM05D002391 ORTHO05D017667 2.5e-38 164.9 115 73.0
Cfa025151 Carpinus fangiana HOM05D002391 ORTHO05D004870 4.6e-32 144.1 833 21.8
BcaC01g02750 Brassica carinata HOM05D002391 ORTHO05D004870 1.9e-30 138.7 143 60.8
ECA246G0062 Erigeron canadensis HOM05D002391 ORTHO05D004870 3.3e-30 137.9 96 74.0
MBI12_g48128_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 2.6e-27 128.3 77 87.0
QL11p025959 Quercus lobata HOM05D002391 ORTHO05D004870 1.6e-21 109.0 263 37.6
QL08p036835 Quercus lobata HOM05D000041 ORTHO05D000061 6.2e-21 107.1 77 71.4
FAN18G2005 Fragaria x ananassa HOM05D002391 ORTHO05D017667 2.4e-20 105.1 71 71.8
TPR.G25208 Trifolium pratense HOM05D002391 ORTHO05D004870 5.3e-20 104.0 82 68.3
TPR.G22870 Trifolium pratense HOM05D002391 ORTHO05D011575 3.4e-19 101.3 140 46.4
QL06p008100 Quercus lobata HOM05D000161 ORTHO05D000111 2.2e-18 98.6 72 70.8
C03p60940 Brassica napus HOM05D002391 ORTHO05D004870 4.9e-18 97.4 81 69.1
BolC3t18356H Brassica oleracea HOM05D002391 ORTHO05D004870 4.9e-18 97.4 81 69.1
TPR.G19723 Trifolium pratense HOM05D002391 ORTHO05D004870 1.9e-14 85.5 59 76.3
TPR.G9012 Trifolium pratense HOM05D002391 ORTHO05D004870 2.5e-14 85.1 57 77.2
FAN19G0487 Fragaria x ananassa HOM05D002391 ORTHO05D017667 3.1e-12 78.2 54 66.7
C09p52400 Brassica napus HOM05D000073 ORTHO05D017582 1.3e-07 62.8 56 60.7
BolC1t04175H Brassica oleracea HOM05D000073 ORTHO05D017582 1.3e-07 62.8 56 60.7
BolC9t58109H Brassica oleracea HOM05D000073 ORTHO05D017582 1.3e-07 62.8 56 60.7
C09p10850 Brassica napus HOM05D000073 ORTHO05D017582 3.9e-07 61.2 56 58.9
MCO01G605 Micromonas commoda HOM05D002391 ORTHO05D004870 6.7e-07 60.5 699 19.0


User provided reference genes

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