Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 0.0e+00 5189.0 2557 100.0
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 0.0e+00 4830.8 2576 92.1
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 0.0e+00 3564.6 2569 69.2
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 0.0e+00 3219.1 2567 63.2
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 0.0e+00 3171.7 2584 62.3
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 0.0e+00 3110.5 2576 61.7
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 0.0e+00 3091.6 2585 61.2
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 0.0e+00 3089.7 2572 60.5
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 0.0e+00 3086.2 2597 60.9
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 0.0e+00 3075.4 2654 59.3
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 0.0e+00 3070.8 2567 60.0
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 0.0e+00 3069.3 2588 60.2
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 0.0e+00 3052.7 2573 59.5
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 0.0e+00 3050.4 2580 60.2
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 3048.8 2575 60.5
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 0.0e+00 3046.5 2571 60.2
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 3045.8 2580 60.2
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 3045.4 2573 59.6
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 3036.1 2573 59.5
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 3022.6 2581 59.1
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 0.0e+00 3014.9 2576 59.6
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 3002.6 2574 59.1
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 3001.5 2574 59.0
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 0.0e+00 2989.1 2591 59.6
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 0.0e+00 2899.8 2431 60.3
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 0.0e+00 2872.4 2586 56.9
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 0.0e+00 2865.9 2573 57.1
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 0.0e+00 2765.7 2566 55.5
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 2719.9 2558 55.1
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 0.0e+00 2695.2 2574 54.1
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2692.1 2551 54.4
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2689.4 2551 54.3
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 0.0e+00 2673.3 2584 53.8
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 0.0e+00 2671.7 2570 54.1
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 2648.2 2526 54.3
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 0.0e+00 2634.0 2570 53.5
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 0.0e+00 2631.7 2566 53.3
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 0.0e+00 2613.6 2570 53.0
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 0.0e+00 2602.8 2630 52.2
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 0.0e+00 2595.1 2566 52.9
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 0.0e+00 2567.7 2584 52.5
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 0.0e+00 2541.1 2606 51.6
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 0.0e+00 2536.5 2589 51.3
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 0.0e+00 2524.2 2597 51.5
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 0.0e+00 2486.1 2584 51.1
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 0.0e+00 2459.1 2596 50.3
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 2437.1 2405 52.5
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 0.0e+00 2431.0 2620 50.4
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 0.0e+00 2421.0 2560 51.4
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 0.0e+00 2407.9 2571 50.1
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 0.0e+00 2407.5 2569 50.9
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 0.0e+00 2404.0 2584 49.8
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 0.0e+00 2389.0 2587 50.6
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 0.0e+00 2386.3 2578 50.2
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 2378.2 2575 49.7
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 2375.1 2574 49.5
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 0.0e+00 2363.2 2599 49.2
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 0.0e+00 2353.6 2580 49.1
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 0.0e+00 2350.9 2587 50.3
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 0.0e+00 2350.5 1948 62.3
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 0.0e+00 2347.4 2586 49.8
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 0.0e+00 2342.4 2583 49.2
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 0.0e+00 2324.3 2573 49.9
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 0.0e+00 2322.4 2577 48.3
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 0.0e+00 2289.6 2584 49.0
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 2287.3 2584 49.0
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 0.0e+00 2281.9 2585 48.9
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 2280.4 2584 48.8
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 2222.2 2590 48.1
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 0.0e+00 2218.7 2583 47.9
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 0.0e+00 2190.2 2583 47.5
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 0.0e+00 2175.6 2557 47.0
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 2154.0 2577 46.8
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 0.0e+00 2133.6 2575 45.7
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 0.0e+00 2131.7 2580 46.9
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 0.0e+00 2051.6 2437 47.1
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 0.0e+00 2041.9 2578 45.0
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 0.0e+00 1983.4 2564 45.1
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 0.0e+00 1884.8 1978 51.0
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 1879.0 1893 51.9
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 0.0e+00 1801.2 2568 41.2
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1738.0 1953 48.8
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 0.0e+00 1637.5 2613 38.9
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 0.0e+00 1582.8 2590 38.7
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 0.0e+00 1486.1 1523 53.6
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 0.0e+00 1485.3 1526 53.0
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 0.0e+00 1478.0 1546 51.9
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1443.3 1341 55.0
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 0.0e+00 1416.4 1380 53.5
Lj7C498G9 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1321.6 1387 50.3
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1248.8 1105 58.3
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1229.2 1367 48.4
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1109.7 1072 54.3
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 0.0e+00 1106.3 1363 45.9
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 0.0e+00 1085.9 1827 37.5
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 0.0e+00 1075.8 2770 30.1
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 2.0e-289 1000.7 1081 50.8
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 2.0e-289 1000.7 1081 50.8
Nitab4.5_0007244g0020 Nicotiana tabacum HOM05D004435 ORTHO05D005103 7.8e-286 988.8 1087 49.6
DCAR_008669 Daucus carota HOM05D004435 ORTHO05D005103 1.3e-264 918.3 1199 43.5
CARHR141910 Cardamine hirsuta HOM05D004435 ORTHO05D005103 5.5e-255 886.3 1047 45.4
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 3.7e-219 767.3 1757 32.0
HPP92_020188 Vanilla planifolia HOM05D004435 ORTHO05D005103 1.8e-210 738.4 1223 37.1
MBI06_g46370_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 5.0e-208 730.3 489 71.0
ATR0605G027 Amborella trichopoda HOM05D004435 ORTHO05D005103 8.8e-205 719.5 589 61.0
Os01g0551900 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 2.3e-192 678.3 630 55.2
Hma1.2p1_0101F.1_g049290 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 9.2e-186 656.4 553 61.3
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.1e-183 649.4 565 58.9
Hma1.2p1_0101F.1_g049270 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.2e-182 646.0 680 48.5
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 1.7e-179 635.6 2082 27.7
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 1.5e-175 622.5 767 47.6
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.7e-171 609.0 1110 36.8
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 5.8e-164 583.9 519 61.8
Aa31LG1G27950 Aethionema arabicum HOM05D004435 ORTHO05D005103 3.3e-159 568.2 765 41.6
TPR.G20227 Trifolium pratense HOM05D004435 ORTHO05D005103 5.3e-149 534.3 442 59.0
SMO203G0146 Selaginella moellendorffii HOM05D004435 ORTHO05D005103 3.4e-140 505.0 458 51.7
SEGI_19519 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 2.1e-121 442.6 967 32.6
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 3.3e-119 435.3 1675 26.4
DCAR_008668 Daucus carota HOM05D004435 ORTHO05D005103 1.6e-108 399.8 292 66.1
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.0e-108 399.4 537 45.1
Cpa.g.sc96.46 Carica papaya HOM05D004435 ORTHO05D005103 2.1e-105 389.4 395 53.2
Cpa.g.sc96.43 Carica papaya HOM05D004435 ORTHO05D005103 5.7e-103 381.3 229 82.1
FAN01G0536 Fragaria x ananassa HOM05D004435 ORTHO05D005103 3.6e-81 308.9 197 76.6
Psat4g016800 Pisum sativum HOM05D004435 ORTHO05D005103 8.0e-81 307.8 637 33.9
ATR0242G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.1e-74 287.3 230 61.3
PGSC0003DMG400000235 Solanum tuberosum HOM05D004435 ORTHO05D005103 2.5e-74 286.2 177 74.6
Actinidia20096 Actinidia chinensis HOM05D004435 ORTHO05D005103 7.3e-74 284.6 270 55.2
Aa31LG1G27960 Aethionema arabicum HOM05D004435 ORTHO05D005103 1.0e-72 280.8 215 62.8
BcaC02g12668 Brassica carinata HOM05D004435 ORTHO05D005103 1.8e-72 280.0 236 59.7
Actinidia20091 Actinidia chinensis HOM05D004435 ORTHO05D005103 1.2e-52 214.2 411 37.7
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 1.6e-52 213.8 316 42.7
Psat1g001920 Pisum sativum HOM05D004435 ORTHO05D005103 1.7e-51 210.3 224 46.0
Atru.chr5.691 Acer truncatum HOM05D004435 ORTHO05D005103 4.0e-48 199.1 120 77.5
Psat2g140840 Pisum sativum HOM05D004435 ORTHO05D005103 7.6e-47 194.9 542 28.6
SEGI_02021 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 2.4e-45 189.9 121 73.6
Os01g0552000 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 1.3e-38 167.5 267 34.1
Psat5g173880 Pisum sativum HOM05D004435 ORTHO05D005103 1.9e-37 163.7 181 44.8
Psat5g173920 Pisum sativum HOM05D004435 ORTHO05D005103 1.9e-37 163.7 181 44.8
Cpa.g.c42981 Carica papaya HOM05D004435 ORTHO05D005103 4.2e-37 162.5 254 39.0
Atru.chr5.692 Acer truncatum HOM05D004435 ORTHO05D005103 5.3e-32 145.6 101 73.3
Cfa023431 Carpinus fangiana HOM05D004435 ORTHO05D005103 2.0e-31 143.7 398 28.9
AagrBONN_evm.TU.Sc2ySwM_228.2860 Anthoceros agrestis HOM05D004435 ORTHO05D005103 2.6e-31 143.3 260 34.6
HanXRQChr10g0310771 Helianthus annuus HOM05D004435 ORTHO05D005103 5.8e-31 142.1 114 62.3
FAN10G3206 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.7e-30 140.6 114 61.4
FAN10G3182 Fragaria x ananassa HOM05D004435 ORTHO05D005103 4.2e-29 136.0 114 60.5
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 1.2e-28 134.4 225 35.1
Ca_26677_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 4.6e-28 132.5 75 81.3
ATR0028G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 5.1e-27 129.0 514 26.5
Glyma.08G280100 Glycine max HOM05D004435 ORTHO05D005103 4.3e-26 125.9 88 72.7
Hma1.2p1_0101F.1_g049260 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 7.6e-23 115.2 103 58.3
Nitab4.5_0007244g0040 Nicotiana tabacum HOM05D004435 ORTHO05D005103 3.2e-21 109.8 121 48.8
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 5.5e-21 109.0 239 30.1
MapolyY_B0006 Marchantia polymorpha HOM05D004435 ORTHO05D005103 6.7e-19 102.1 299 26.1
HanXRQChr03g0082981 Helianthus annuus HOM05D004435 ORTHO05D005103 1.3e-17 97.8 118 47.5
TPR.G40720 Trifolium pratense HOM05D004435 ORTHO05D005103 2.0e-15 90.5 123 41.5
MD07G1152500 Malus domestica HOM05D004435 ORTHO05D005103 7.6e-15 88.6 50 80.0
BcaNung07057 Brassica carinata HOM05D004435 ORTHO05D005103 3.8e-14 86.3 155 38.1
arahy.Tifrunner.gnm1.ann1.63Q0V0 Arachis hypogaea HOM05D008137 ORTHO05D005103 1.3e-11 77.8 118 43.2
SEGI_36456 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.8e-11 77.4 120 36.7
Atru.chr5.687 Acer truncatum HOM05D002476 ORTHO05D002652 3.9e-11 76.3 57 70.2
Psat0ss888g0080 Pisum sativum HOM05D004435 ORTHO05D005103 3.3e-10 73.2 89 42.7
Psat5g020760 Pisum sativum HOM05D004435 ORTHO05D005103 9.7e-10 71.6 94 39.4
Psat6g059000 Pisum sativum HOM05D002708 ORTHO05D003516 3.8e-06 59.7 58 44.8


User provided reference genes

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