Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 2.3e-201 705.3 347 100.0
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 8.1e-186 653.7 347 92.2
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 3.5e-149 531.9 347 74.9
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 3.1e-145 518.8 348 72.1
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 8.5e-143 510.8 348 71.3
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 3.0e-140 502.3 348 69.8
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 1.1e-139 500.4 347 69.7
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 9.7e-139 497.3 348 67.5
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 6.3e-138 494.6 348 67.0
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 6.3e-138 494.6 348 69.8
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 8.2e-138 494.2 349 68.5
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 1.1e-137 493.8 348 67.5
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 2.4e-137 492.7 348 67.2
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 4.1e-137 491.9 347 68.9
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 9.1e-137 490.7 347 69.2
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 9.1e-137 490.7 347 69.2
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 2.0e-136 489.6 348 68.4
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 1.9e-134 483.0 353 67.1
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 1.6e-133 479.9 348 65.5
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 2.1e-133 479.6 348 65.2
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 2.1e-133 479.6 348 65.2
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.0e-132 477.2 348 65.2
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.8e-132 476.5 348 64.9
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 3.0e-132 475.7 348 65.5
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 2.2e-130 469.5 352 65.3
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 1.1e-129 467.2 334 64.4
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 3.1e-129 465.7 352 63.4
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 4.1e-129 465.3 346 65.9
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.5e-128 463.4 349 65.3
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 1.5e-128 463.4 349 64.8
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 1.5e-128 463.4 349 62.8
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 5.0e-127 458.4 348 62.6
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 3.2e-126 455.7 348 63.2
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 5.5e-126 454.9 315 68.9
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 1.6e-125 453.4 347 63.4
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 1.6e-125 453.4 352 62.2
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 2.1e-125 453.0 341 62.8
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 8.0e-125 451.1 365 60.3
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 1.0e-124 450.7 348 63.5
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 3.9e-124 448.7 365 60.5
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 6.7e-124 448.0 335 63.9
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 2.6e-123 446.0 323 66.6
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 3.3e-123 445.7 350 62.3
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 5.7e-123 444.9 349 61.0
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 5.7e-123 444.9 349 61.6
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 9.7e-123 444.1 363 59.8
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 1.3e-122 443.7 307 66.4
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 4.8e-122 441.8 301 69.4
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 4.8e-122 441.8 358 59.5
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 1.4e-121 440.3 349 61.6
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 1.4e-121 440.3 340 62.9
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 4.1e-121 438.7 280 72.1
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 4.1e-121 438.7 359 59.1
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 4.1e-121 438.7 341 61.6
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 4.1e-121 438.7 335 62.7
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 4.1e-121 438.7 334 62.6
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 5.3e-121 438.3 349 61.0
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 5.3e-121 438.3 341 61.0
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 9.1e-121 437.6 305 65.9
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 1.6e-120 436.8 341 60.7
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 1.6e-120 436.8 322 62.7
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 1.7e-119 433.3 342 61.1
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 5.0e-119 431.8 336 61.3
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 5.0e-119 431.8 349 60.7
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 8.5e-119 431.0 349 59.3
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 1.9e-118 429.9 356 60.1
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 9.4e-118 427.6 349 60.2
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 1.6e-117 426.8 340 61.8
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 3.6e-117 425.6 339 59.3
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 6.1e-117 424.9 348 59.8
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 3.0e-116 422.5 350 59.1
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 5.2e-116 421.8 349 57.6
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 6.8e-116 421.4 354 58.5
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 5.7e-115 418.3 329 61.4
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 1.7e-114 416.8 348 59.2
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 1.7e-114 416.8 334 58.1
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 8.3e-114 414.5 338 56.8
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 7.0e-113 411.4 311 61.7
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 7.0e-113 411.4 349 60.2
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 9.1e-113 411.0 347 58.5
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 2.0e-112 409.8 348 57.2
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 7.7e-112 407.9 331 58.0
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 1.5e-110 403.7 341 55.4
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 2.5e-110 402.9 348 58.6
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 2.5e-110 402.9 348 58.6
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 3.2e-110 402.5 344 53.8
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 1.6e-109 400.2 347 56.8
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 2.7e-109 399.4 347 56.8
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 2.7e-109 399.4 347 56.2
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 3.0e-108 396.0 349 57.3
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 1.8e-105 386.7 312 58.3
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 3.5e-104 382.5 286 61.9
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 1.2e-101 374.0 349 53.9
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 4.7e-101 372.1 337 55.2
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 4.7e-101 372.1 343 51.6
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 1.8e-100 370.2 349 53.3
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.2e-99 367.5 335 54.9
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 5.4e-97 358.6 352 52.0
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 1.6e-96 357.1 323 53.6
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 2.7e-96 356.3 338 55.0
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 2.7e-96 356.3 294 58.2
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 8.6e-95 351.3 340 49.7
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 1.6e-88 330.5 254 59.4
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 2.4e-81 306.6 274 54.0
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 5.6e-78 295.4 220 63.2
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 4.4e-75 285.8 353 41.6
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 7.1e-73 278.5 285 44.9
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 9.2e-73 278.1 297 46.1
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 2.1e-72 276.9 288 44.1
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 3.0e-71 273.1 325 43.1
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 8.9e-68 261.5 294 43.2
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 1.6e-64 250.8 315 43.5
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 1.7e-63 247.3 355 38.6
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 8.4e-58 228.4 154 68.2
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 5.4e-57 225.7 190 52.1
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-51 207.6 319 36.1
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.8e-50 203.0 330 35.5
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-49 201.4 292 36.3
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.7e-48 196.8 302 34.8
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-46 191.4 299 37.1
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-46 191.0 307 36.2
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.4e-46 188.7 308 36.0
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.8e-45 186.8 308 34.7
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 4.8e-45 186.0 282 34.4
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.2e-43 181.4 250 39.2
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.0e-43 180.6 238 39.5
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.0e-42 178.3 293 33.8
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.3e-42 177.9 316 34.5
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.7e-42 177.6 299 37.1
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.2e-41 173.3 315 34.0
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.5e-41 172.6 292 32.2
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 2.7e-40 170.2 285 34.0
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.8e-37 160.2 293 33.4
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.1e-36 156.8 294 32.3
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.0e-35 154.1 293 32.4
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 2.3e-31 140.6 321 29.0
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 9.0e-28 128.6 273 30.8
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 1.1e-22 111.7 280 27.5
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.7e-13 81.3 74 45.9
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-12 78.2 63 52.4
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 2.0e-11 74.3 154 29.2
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 1.0e-10 72.0 51 52.9
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 9.4e-09 65.5 89 40.4
AagrBONN_evm.TU.Sc2ySwM_117.3082 Anthoceros agrestis HOM05D005299 ORTHO05D072579 5.2e-07 59.7 137 27.0


User provided reference genes

Program Settings