Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G168300 Populus trichocarpa HOM05D007041 ORTHO05D008036 1.9e-69 265.8 138 100.0
Sabra02G0143600 Salix brachista HOM05D007041 ORTHO05D008036 4.7e-44 181.4 158 67.7
Potri.014G095600 Populus trichocarpa HOM05D007041 ORTHO05D008036 3.8e-30 135.2 142 62.7
Sabra14G0070100 Salix brachista HOM05D007041 ORTHO05D008036 2.3e-27 125.9 134 59.7
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.1e-13 80.5 133 43.6
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 2.5e-13 79.3 132 37.9
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 2.8e-12 75.9 132 38.6
Manes.05G025400 Manihot esculenta HOM05D007041 ORTHO05D008036 6.2e-12 74.7 121 44.6
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 6.2e-12 74.7 125 40.8
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 6.8e-11 71.2 123 41.5
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.3e-09 67.0 121 35.5
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 1.3e-09 67.0 121 37.2
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 2.2e-09 66.2 130 37.7
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 2.2e-09 66.2 106 38.7
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 2.9e-09 65.9 121 31.4
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 2.9e-09 65.9 114 37.7
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 2.9e-09 65.9 114 37.7
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.1e-08 63.9 125 38.4
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.1e-08 63.9 130 36.9
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 1.4e-08 63.5 111 45.0
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 1.4e-08 63.5 138 37.0
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.4e-08 63.5 130 36.9
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 1.4e-08 63.5 68 52.9
Atru.chr5.628 Acer truncatum HOM05D007041 ORTHO05D008036 1.9e-08 63.2 114 43.0
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.9e-08 63.2 73 42.5
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 3.2e-08 62.4 112 37.5
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 3.2e-08 62.4 130 33.8
Manes.01G248300 Manihot esculenta HOM05D007041 ORTHO05D008036 4.1e-08 62.0 114 42.1
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 4.1e-08 62.0 40 70.0
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 5.4e-08 61.6 71 45.1
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 9.2e-08 60.8 47 55.3
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 9.2e-08 60.8 121 37.2
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 1.6e-07 60.1 86 45.3
Lj3g0003817 Lotus japonicus HOM05D007041 ORTHO05D008036 1.6e-07 60.1 119 37.8
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 2.7e-07 59.3 111 36.0
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 2.7e-07 59.3 54 51.9
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 4.6e-07 58.5 62 50.0
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 4.6e-07 58.5 121 31.4
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 6.0e-07 58.2 126 34.9
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 6.0e-07 58.2 46 58.7
Lj1g0010364 Lotus japonicus HOM05D007041 ORTHO05D008036 7.8e-07 57.8 100 38.0
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 7.8e-07 57.8 54 48.1
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 7.8e-07 57.8 121 34.7
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.3e-06 57.0 105 39.0
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.3e-06 57.0 132 35.6
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 1.3e-06 57.0 69 47.8
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 1.3e-06 57.0 40 65.0
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 1.7e-06 56.6 53 56.6
Oeu007855.1 Olea europaea HOM05D007041 ORTHO05D008036 1.7e-06 56.6 127 32.3
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 3.0e-06 55.8 38 57.9
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 5.1e-06 55.1 48 52.1
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 5.1e-06 55.1 48 52.1
Medtr8g027905 Medicago truncatula HOM05D001941 ORTHO05D008036 5.1e-06 55.1 55 56.4
Zm00001eb310140 Zea mays HOM05D007041 ORTHO05D008036 5.1e-06 55.1 47 55.3
Zm00001eb441140 Zea mays HOM05D007041 ORTHO05D008036 5.1e-06 55.1 47 55.3
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 6.6e-06 54.7 56 53.6
Gorai.001G156400 Gossypium raimondii HOM05D007041 ORTHO05D008036 6.6e-06 54.7 44 61.4


User provided reference genes

Program Settings