Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 2244.5 1123 100.0
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 2040.8 1125 90.9
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 2022.3 1253 84.4
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1991.1 1185 85.1
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1956.4 1123 86.7
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1934.1 1125 85.3
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1931.4 1118 84.7
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1913.3 1125 84.0
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1911.3 1127 83.9
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1908.3 1123 84.1
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1906.7 1125 84.1
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1899.0 1132 83.7
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1898.2 1125 84.0
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1897.5 1125 83.5
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1890.5 1123 83.0
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1886.7 1118 83.9
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1885.9 1125 83.2
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1885.5 1124 84.3
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1882.1 1125 82.8
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1874.8 1128 82.4
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1871.3 1125 82.8
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1866.3 1139 81.7
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1865.1 1095 84.4
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1858.2 1125 81.9
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1856.3 1125 82.1
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1855.5 1125 82.0
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1852.4 1139 81.4
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1851.6 1124 82.0
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1851.3 1124 82.0
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1848.2 1126 81.5
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1841.6 1125 80.5
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1838.2 1126 81.4
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1837.8 1129 80.4
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1833.5 1128 81.0
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1831.6 1125 80.5
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1830.8 1127 80.5
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1830.8 1126 81.0
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1828.9 1129 80.0
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1827.8 1125 81.7
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1827.0 1123 81.7
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1827.0 1126 80.7
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1818.5 1127 80.3
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1815.0 1120 80.0
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1813.5 1151 78.8
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1811.2 1125 80.6
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1795.0 1126 79.8
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1793.1 1129 79.3
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1792.3 1120 78.8
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1792.3 1123 80.0
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1792.3 1124 79.5
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1787.3 1122 78.3
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1786.2 1123 79.1
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1775.4 1077 82.4
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1774.6 1122 78.8
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1770.7 1119 77.7
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1770.0 1128 77.6
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1769.6 1124 77.7
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1765.0 1132 77.3
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1758.8 1035 83.8
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1758.4 1203 74.3
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1757.7 1169 76.0
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1755.0 1075 81.2
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1754.2 1126 78.9
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1751.9 1118 77.1
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1749.6 1188 74.2
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1733.0 1081 79.6
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1729.1 1126 76.0
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1722.2 1122 76.9
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1716.8 1118 75.6
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1716.0 1117 76.2
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1713.4 1125 77.1
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1708.7 1118 75.4
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1704.9 1116 75.4
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1691.4 1118 74.9
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1691.4 1119 75.5
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1690.2 1118 74.9
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1677.5 1316 67.6
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1676.4 1121 74.1
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1676.4 1117 74.1
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1674.8 1121 74.0
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1669.4 1156 74.4
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1655.2 1121 73.4
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1654.0 1121 73.3
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1619.4 1125 72.8
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1615.5 1153 70.5
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1613.6 1142 70.8
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1597.0 1163 71.4
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1587.0 951 83.1
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1561.6 1118 70.6
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1532.7 1122 69.0
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1527.3 1161 68.9
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1523.5 1121 68.3
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1521.1 1121 68.2
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1493.4 1105 69.3
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1444.1 869 81.6
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1434.9 842 84.3
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1434.1 838 84.6
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1421.4 980 74.9
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1373.6 854 78.5
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1288.5 1127 60.8
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1262.7 782 80.1
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1250.7 820 74.3
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1203.0 687 87.0
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 0.0e+00 1119.8 1529 44.9
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1112.8 1143 51.0
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 1.2e-299 1033.5 1123 50.1
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 1.3e-290 1003.4 1151 47.3
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 1.2e-278 963.8 1151 45.1
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 1.8e-266 923.3 668 67.7
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 9.7e-265 917.5 674 70.6
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 7.7e-262 907.9 531 85.9
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 6.3e-256 888.3 584 78.1
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 2.4e-255 886.3 1395 37.3
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 4.5e-246 855.5 736 60.3
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 1.1e-202 711.4 587 64.4
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 4.4e-201 706.1 451 76.7
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 1.3e-200 704.5 435 81.6
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 2.4e-183 647.1 591 54.5
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 4.3e-180 636.3 434 70.7
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 1.2e-161 575.1 450 66.4
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 2.4e-138 497.7 313 78.3
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 9.4e-135 485.7 379 71.2
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 2.9e-120 437.6 332 72.3
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 5.2e-101 373.6 1094 29.1
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 6.0e-89 333.6 779 31.5
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 4.6e-81 307.4 1457 22.7
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.7e-80 305.4 188 77.1
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 4.8e-78 297.4 289 55.4
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.2e-76 292.7 253 65.6
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 7.4e-71 273.5 194 67.0
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 6.9e-69 266.9 198 74.2
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 3.9e-64 251.1 186 64.5
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 5.6e-63 247.3 294 48.6
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 3.4e-60 238.0 319 39.5
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 3.7e-54 218.0 212 57.1
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 4.5e-52 211.1 594 32.5
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 7.2e-50 203.8 217 57.6
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 3.0e-48 198.4 263 44.5
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 8.8e-48 196.8 217 55.3
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 1.8e-45 189.1 113 77.0
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 1.3e-43 183.0 350 40.6
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 1.1e-39 169.9 169 53.3
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 5.0e-35 154.5 183 50.8
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 2.1e-33 149.1 717 22.7
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 4.7e-33 147.9 87 83.9
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 1.3e-30 139.8 87 79.3
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.2e-28 133.3 85 78.8
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.5e-26 126.3 85 64.7
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 3.2e-26 125.2 138 55.8
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.3e-22 113.2 164 43.9
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 2.8e-22 112.1 64 81.2
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 3.1e-21 108.6 74 71.6
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 2.7e-17 95.5 67 64.2
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 5.2e-16 91.3 111 48.6
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 6.8e-16 90.9 95 53.7
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 8.8e-16 90.5 60 70.0
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 2.6e-15 89.0 64 70.3
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 3.4e-15 88.6 80 60.0
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 5.7e-15 87.8 59 76.3
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 9.8e-15 87.0 69 63.8
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 4.8e-14 84.7 45 82.2
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.8e-13 82.8 56 69.6
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 4.5e-12 78.2 49 73.5
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 1.5e-10 73.2 55 63.6
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 4.2e-10 71.6 48 70.8
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.0e-08 67.0 43 69.8
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 2.3e-08 65.9 71 50.7
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 5.2e-08 64.7 34 73.5
arahy.Tifrunner.gnm1.ann1.RG0L3L Arachis hypogaea HOM05D004297 ORTHO05D085181 3.7e-06 58.5 71 40.8
Nn1g01614 Nelumbo nucifera HOM05D004297 ORTHO05D005213 6.3e-06 57.8 41 61.0


User provided reference genes

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