Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 2.3e-109 399.1 219 100.0
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.2e-70 270.4 161 82.6
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 4.3e-52 208.8 211 55.5
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 5.7e-44 181.8 170 57.1
Sabra02G0126000 Salix brachista HOM05D005367 ORTHO05D006328 2.2e-43 179.9 209 62.7
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 5.9e-41 171.8 167 57.5
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 4.2e-39 165.6 159 54.1
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 5.2e-37 158.7 166 50.0
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 2.6e-36 156.4 158 54.4
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 3.3e-36 156.0 227 46.3
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 3.3e-36 156.0 157 54.1
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 1.3e-35 154.1 163 49.7
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 1.3e-35 154.1 173 50.9
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 1.7e-35 153.7 162 52.5
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 2.2e-35 153.3 231 43.7
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 2.2e-35 153.3 216 43.5
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 1.8e-34 150.2 225 41.3
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 3.1e-34 149.4 164 50.0
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 5.3e-34 148.7 178 46.1
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 5.3e-34 148.7 234 46.6
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 9.1e-34 147.9 232 46.6
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 1.2e-33 147.5 160 52.5
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 2.6e-33 146.4 159 49.7
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 5.9e-33 145.2 161 52.2
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 5.9e-33 145.2 238 45.4
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 1.0e-32 144.4 164 43.9
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 2.2e-32 143.3 163 47.9
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 2.9e-32 142.9 215 43.3
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 6.5e-32 141.7 168 44.0
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 8.5e-32 141.4 222 48.6
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 1.9e-31 140.2 225 42.7
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 2.5e-31 139.8 229 42.8
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 3.2e-31 139.4 176 46.0
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 4.2e-31 139.0 163 47.9
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 5.5e-31 138.7 168 44.6
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 1.6e-30 137.1 172 43.6
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 1.6e-30 137.1 222 43.2
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 2.1e-30 136.7 225 37.8
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 2.7e-30 136.3 165 43.0
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 3.6e-30 136.0 156 44.9
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 4.7e-30 135.6 156 44.9
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 8.0e-30 134.8 156 47.4
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 1.4e-29 134.0 154 49.4
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 1.4e-29 134.0 172 43.0
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.8e-29 133.7 202 41.6
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 3.0e-29 132.9 158 40.5
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 4.0e-29 132.5 159 44.7
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 5.2e-29 132.1 159 48.4
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.2e-29 132.1 154 48.7
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 6.7e-29 131.7 168 45.2
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 6.7e-29 131.7 168 45.2
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 6.7e-29 131.7 173 43.9
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.2e-28 131.0 195 41.0
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 2.6e-28 129.8 174 43.1
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.3e-28 129.4 195 41.0
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 3.3e-28 129.4 168 44.6
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 4.4e-28 129.0 163 44.2
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 5.7e-28 128.6 158 44.9
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 9.7e-28 127.9 174 43.7
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 1.3e-27 127.5 165 41.8
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 2.2e-27 126.7 215 40.0
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 6.3e-27 125.2 162 40.7
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 1.4e-26 124.0 155 41.3
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 2.4e-26 123.2 160 40.6
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 3.1e-26 122.9 168 43.5
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 3.1e-26 122.9 153 45.1
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 4.1e-26 122.5 160 43.8
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 4.1e-26 122.5 167 43.1
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 4.1e-26 122.5 171 43.3
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 7.0e-26 121.7 219 35.2
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 3.5e-25 119.4 157 40.1
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 4.5e-25 119.0 162 42.6
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 5.9e-25 118.6 162 39.5
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 5.9e-25 118.6 165 42.4
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 1.0e-24 117.9 155 43.9
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 1.0e-24 117.9 152 41.4
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 1.0e-24 117.9 238 40.8
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 2.2e-24 116.7 155 40.0
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 5.0e-24 115.5 160 39.4
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 5.0e-24 115.5 167 40.7
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 6.5e-24 115.2 162 39.5
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 8.5e-24 114.8 160 39.4
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 1.1e-23 114.4 166 38.6
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.5e-23 114.0 168 39.3
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 1.5e-23 114.0 170 41.2
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 1.9e-23 113.6 150 42.7
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 4.2e-23 112.5 173 39.9
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 5.5e-23 112.1 155 47.1
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 5.5e-23 112.1 161 37.9
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.2e-23 111.7 167 39.5
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 1.2e-22 110.9 158 36.1
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 1.2e-22 110.9 230 36.5
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 2.7e-22 109.8 140 44.3
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 3.6e-22 109.4 153 37.9
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 3.6e-22 109.4 155 39.4
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 8.0e-22 108.2 160 39.4
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 1.0e-21 107.8 169 37.9
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 1.0e-21 107.8 155 37.4
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 1.0e-21 107.8 155 37.4
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 1.0e-21 107.8 150 41.3
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 1.4e-21 107.5 160 36.9
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 1.4e-21 107.5 143 44.1
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 3.0e-21 106.3 153 41.2
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 1.2e-20 104.4 156 39.1
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 2.6e-20 103.2 221 35.3
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 2.6e-20 103.2 155 36.8
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 2.6e-20 103.2 157 37.6
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 5.7e-20 102.1 159 41.5
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 1.3e-19 100.9 154 37.0
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 2.2e-19 100.1 157 37.6
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 1.8e-18 97.1 224 32.1
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 3.5e-17 92.8 146 37.7
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.5e-17 92.4 139 38.1
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 1.3e-16 90.9 155 32.3
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 1.3e-16 90.9 163 35.6
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 3.8e-16 89.4 153 36.6
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 3.8e-16 89.4 162 32.1
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 5.0e-16 89.0 162 32.1
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 5.5e-15 85.5 139 38.1
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.2e-15 85.1 102 48.0
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.1e-14 83.6 157 35.7
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.1e-14 83.6 157 35.7
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 8.8e-13 78.2 183 31.7
MD01G1056800 Malus domestica HOM05D005367 ORTHO05D006328 2.6e-12 76.6 92 51.1
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 3.4e-12 76.3 106 38.7
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.4e-12 75.9 181 33.1
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.7e-12 75.5 111 40.5
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.7e-12 75.5 111 40.5
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 5.7e-12 75.5 205 27.8
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 5.7e-12 75.5 118 43.2
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.7e-11 73.9 164 31.7
AUR62022549 Chenopodium quinoa HOM05D005367 ORTHO05D006328 1.1e-10 71.2 109 43.1
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 2.0e-09 67.0 136 31.6
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 2.7e-09 66.6 136 33.1
Aa31LG1G11110 Aethionema arabicum HOM05D005367 ORTHO05D006328 5.9e-09 65.5 108 37.0
CDE08G1175 Ceratophyllum demersum HOM05D005367 ORTHO05D006328 6.6e-08 62.0 120 35.8
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 1.9e-07 60.5 50 54.0
CARHR000590 Cardamine hirsuta HOM05D005367 ORTHO05D006328 1.9e-07 60.5 111 36.0
Os04g0556900 Oryza sativa ssp. japonica HOM05D005367 ORTHO05D006328 9.5e-07 58.2 176 26.7
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 1.2e-06 57.8 62 45.2


User provided reference genes

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