Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 0.0e+00 1310.0 642 100.0
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 1.3e-293 1012.7 648 77.3
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 2.8e-293 1011.5 645 77.5
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 3.5e-291 1004.6 646 75.5
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 1.7e-290 1002.3 646 76.5
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 2.2e-290 1001.9 642 76.6
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 2.9e-290 1001.5 646 75.9
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 3.6e-288 994.6 649 75.7
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 7.5e-286 986.9 641 76.9
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.8e-284 982.2 680 72.2
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 2.7e-283 978.4 669 73.2
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 7.7e-283 976.9 648 74.5
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 2.9e-282 974.9 646 74.8
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 2.9e-282 974.9 649 74.0
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 8.5e-282 973.4 646 74.0
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 1.5e-281 972.6 644 74.5
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 1.9e-281 972.2 635 75.4
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 2.3e-279 965.3 662 73.0
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 4.0e-279 964.5 637 74.3
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 3.4e-278 961.4 605 76.5
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 5.7e-278 960.7 662 72.7
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 9.8e-278 959.9 652 73.8
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 1.4e-276 956.1 650 72.6
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 1.1e-273 946.4 655 72.2
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 1.2e-272 943.0 651 71.9
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 1.0e-271 939.9 643 72.5
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 5.7e-270 934.1 649 68.6
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 4.1e-268 927.9 632 73.6
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 1.3e-266 922.9 652 69.8
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 4.9e-261 904.4 645 68.8
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 1.8e-260 902.5 647 67.9
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 1.8e-260 902.5 648 68.5
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 2.0e-259 899.0 646 68.0
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 5.9e-259 897.5 632 69.0
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 2.3e-258 895.6 650 68.2
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 3.9e-258 894.8 651 68.7
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 4.3e-257 891.3 644 66.6
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 7.3e-257 890.6 653 69.4
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 7.3e-257 890.6 645 69.1
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 2.8e-256 888.6 662 67.7
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 1.8e-255 885.9 652 67.8
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 1.8e-255 885.9 647 69.9
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 2.3e-255 885.6 640 69.5
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 2.3e-255 885.6 647 69.7
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 8.9e-255 883.6 645 68.7
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 5.8e-254 880.9 652 68.1
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 5.8e-254 880.9 643 69.2
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 7.5e-254 880.6 668 66.2
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 9.8e-254 880.2 644 67.7
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 1.3e-253 879.8 641 66.8
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 6.4e-253 877.5 643 69.1
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 4.1e-252 874.8 643 68.1
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 9.2e-252 873.6 653 68.0
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 9.2e-252 873.6 643 67.3
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 1.6e-251 872.8 644 68.2
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 1.3e-250 869.8 653 66.2
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 2.3e-250 869.0 636 65.4
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 1.1e-249 866.7 641 66.5
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 1.9e-249 865.9 645 66.5
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 1.9e-249 865.9 639 69.2
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 2.5e-249 865.5 649 67.5
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 3.3e-249 865.1 647 66.5
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 4.3e-249 864.8 646 66.1
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 5.6e-249 864.4 641 66.8
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 7.3e-249 864.0 653 64.9
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 1.6e-248 862.8 585 71.6
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 3.6e-248 861.7 640 67.0
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 8.1e-248 860.5 631 67.7
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 1.1e-247 860.1 637 66.6
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 1.4e-247 859.8 669 64.6
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 2.0e-246 855.9 649 68.1
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 9.8e-246 853.6 649 67.0
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 1.3e-245 853.2 642 64.6
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 4.9e-245 851.3 631 66.7
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 1.9e-244 849.4 647 65.5
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 1.2e-243 846.7 625 66.6
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 1.2e-243 846.7 640 64.4
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 8.6e-242 840.5 698 61.9
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 2.5e-241 839.0 671 63.5
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 5.6e-241 837.8 663 63.2
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 5.6e-241 837.8 663 63.2
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 2.1e-235 819.3 642 63.4
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 5.2e-231 804.7 642 62.8
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 2.1e-227 792.7 645 64.0
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 3.3e-225 785.4 643 59.9
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 1.5e-222 776.5 632 61.7
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 8.1e-216 754.2 457 78.8
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 3.8e-213 745.3 497 73.0
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 2.1e-203 713.0 597 59.8
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 2.4e-199 699.5 645 58.9
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 3.4e-198 695.7 552 63.2
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 1.6e-187 660.2 620 53.4
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 2.8e-184 649.4 620 56.0
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 4.8e-184 648.7 621 53.0
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 2.0e-174 616.7 361 80.1
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 1.0e-173 614.4 498 60.6
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 5.5e-164 582.0 336 82.4
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 1.2e-161 574.3 440 64.8
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 2.1e-155 553.5 336 78.0
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 1.3e-136 491.1 459 52.9
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 1.1e-124 451.4 426 57.3
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 1.0e-101 375.2 196 96.4
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 1.7e-80 304.7 267 56.6
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 1.7e-72 278.1 175 70.9
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 4.2e-63 246.9 205 61.0
QL09p021383 Quercus lobata HOM05D006991 ORTHO05D009188 1.2e-62 245.4 155 78.7
EL10Ac5g11247 Beta vulgaris HOM05D006991 ORTHO05D009188 3.3e-52 210.7 190 53.7
Ca_23662_v3 Cicer arietinum L. HOM05D006991 ORTHO05D028457 1.3e-51 208.8 179 64.2
AUR62003727 Chenopodium quinoa HOM05D001417 ORTHO05D001496 1.6e-49 201.8 159 65.4
AUR62033321 Chenopodium quinoa HOM05D006991 ORTHO05D028457 1.7e-48 198.4 128 75.0
PSO782G3099 Papaver somniferum HOM05D006991 ORTHO05D028457 3.5e-41 174.1 170 54.7
CAN.G1527.6 Capsicum annuum HOM05D006991 ORTHO05D028457 6.6e-32 143.3 106 66.0
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 3.3e-31 141.0 73 87.7
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 8.9e-29 132.9 115 59.1
AUR62036784 Chenopodium quinoa HOM05D006991 ORTHO05D138340 9.5e-23 112.8 77 64.9
CAN.G226.8 Capsicum annuum HOM05D006991 ORTHO05D000001 2.8e-22 111.3 62 80.6


User provided reference genes

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