Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 7.7e-51 203.4 92 100.0
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 8.5e-50 199.9 92 97.8
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 1.8e-47 192.2 90 95.6
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 1.1e-46 189.5 90 94.4
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 4.5e-43 177.6 91 86.8
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 4.5e-43 177.6 91 86.8
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 1.7e-42 175.6 85 91.8
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 2.9e-42 174.9 85 94.1
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 5.0e-42 174.1 87 90.8
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 1.4e-41 172.6 86 86.0
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 1.9e-41 172.2 84 90.5
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 3.2e-41 171.4 85 91.8
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 4.2e-41 171.0 87 89.7
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 5.5e-41 170.6 83 90.4
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 9.4e-41 169.9 87 87.4
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 1.6e-40 169.1 85 90.6
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 1.6e-40 169.1 83 91.6
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 4.7e-40 167.5 83 90.4
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 4.7e-40 167.5 83 90.4
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 4.7e-40 167.5 83 89.2
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 6.1e-40 167.2 84 86.9
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 7.9e-40 166.8 92 81.5
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 1.8e-39 165.6 83 89.2
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 1.8e-39 165.6 84 86.9
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.8e-39 165.6 84 89.3
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.8e-39 165.6 84 89.3
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.8e-39 165.6 84 89.3
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 2.3e-39 165.2 92 84.8
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 3.0e-39 164.9 84 86.9
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 3.0e-39 164.9 84 88.1
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.9e-39 164.5 86 87.2
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 3.9e-39 164.5 91 82.4
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 3.9e-39 164.5 87 83.9
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 3.9e-39 164.5 85 88.2
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 3.9e-39 164.5 78 92.3
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 5.2e-39 164.1 88 87.5
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 6.7e-39 163.7 88 81.8
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 6.7e-39 163.7 81 86.4
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 6.7e-39 163.7 88 87.5
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 8.8e-39 163.3 87 86.2
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 8.8e-39 163.3 84 85.7
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 1.1e-38 162.9 86 86.0
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.1e-38 162.9 85 89.4
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 1.1e-38 162.9 87 85.1
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 1.1e-38 162.9 94 78.7
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 1.1e-38 162.9 84 83.3
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 1.5e-38 162.5 83 88.0
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 2.0e-38 162.2 85 88.2
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 2.0e-38 162.2 85 88.2
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 2.6e-38 161.8 86 84.9
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 2.6e-38 161.8 83 88.0
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 2.6e-38 161.8 83 88.0
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 2.6e-38 161.8 84 83.3
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 3.3e-38 161.4 84 86.9
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 3.3e-38 161.4 84 86.9
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 3.3e-38 161.4 91 82.4
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 3.3e-38 161.4 87 85.1
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 4.4e-38 161.0 92 77.2
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 5.7e-38 160.6 92 77.2
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 9.7e-38 159.8 83 86.7
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 9.7e-38 159.8 87 81.6
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 1.3e-37 159.5 83 86.7
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 1.3e-37 159.5 84 83.3
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 1.7e-37 159.1 87 82.8
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 2.2e-37 158.7 92 77.2
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 4.8e-37 157.5 78 89.7
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 6.3e-37 157.1 87 81.6
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 6.3e-37 157.1 84 82.1
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 1.1e-36 156.4 87 80.5
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 1.1e-36 156.4 86 82.6
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.1e-36 156.4 85 82.4
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.8e-36 155.6 84 83.3
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 2.4e-36 155.2 78 88.5
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 2.4e-36 155.2 84 82.1
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 2.4e-36 155.2 84 82.1
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 3.1e-36 154.8 85 77.6
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 4.1e-36 154.5 84 79.8
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 4.1e-36 154.5 83 86.7
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 5.3e-36 154.1 85 80.0
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 7.0e-36 153.7 86 81.4
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 7.0e-36 153.7 84 81.0
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 9.1e-36 153.3 89 77.5
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 1.2e-35 152.9 86 83.7
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 1.2e-35 152.9 86 83.7
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 1.6e-35 152.5 86 81.4
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 1.6e-35 152.5 85 80.0
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 2.0e-35 152.1 86 84.9
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 3.5e-35 151.4 88 77.3
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 4.5e-35 151.0 84 78.6
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 4.5e-35 151.0 84 78.6
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 4.5e-35 151.0 84 78.6
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 5.9e-35 150.6 84 76.2
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 5.9e-35 150.6 87 74.7
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 7.7e-35 150.2 78 87.2
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 1.3e-34 149.4 84 76.2
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 1.7e-34 149.1 83 83.1
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 2.2e-34 148.7 85 74.1
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 3.8e-34 147.9 86 79.1
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 3.8e-34 147.9 85 75.3
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 5.0e-34 147.5 87 79.3
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 6.5e-34 147.1 78 85.9
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 3.2e-33 144.8 85 77.6
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 4.7e-32 141.0 80 73.8
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 6.1e-32 140.6 82 75.6
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 8.0e-32 140.2 80 73.8
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 4.0e-31 137.9 80 77.5
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 3.3e-30 134.8 62 91.9
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 8.2e-29 130.2 73 75.3
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 1.1e-28 129.8 108 60.2
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 1.8e-28 129.0 63 95.2
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 2.0e-27 125.6 155 45.2
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 2.7e-27 125.2 62 85.5
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 8.5e-26 120.2 60 88.3
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 8.5e-26 120.2 61 91.8
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 3.2e-25 118.2 63 90.5
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 7.2e-25 117.1 61 85.2
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 9.4e-25 116.7 60 90.0
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 1.2e-24 116.3 63 82.5
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 1.0e-23 113.2 63 85.7
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 3.0e-23 111.7 62 85.5
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 4.0e-23 111.3 60 83.3
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 4.0e-23 111.3 65 80.0
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 1.2e-22 109.8 83 59.0
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 5.7e-22 107.5 60 83.3
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 5.7e-22 107.5 60 83.3
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 9.8e-22 106.7 63 74.6
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 9.8e-22 106.7 83 60.2
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 1.3e-21 106.3 65 75.4
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 1.7e-21 105.9 53 88.7
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 2.8e-21 105.1 55 87.3
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 4.8e-21 104.4 59 84.7
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 1.1e-20 103.2 61 68.9
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.8e-20 102.4 60 75.0
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.8e-20 102.4 59 76.3
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 1.8e-20 102.4 62 79.0
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 2.4e-20 102.1 63 77.8
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 3.1e-20 101.7 53 88.7
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 2.7e-19 98.6 64 73.4
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 2.7e-19 98.6 63 73.0
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.0e-18 96.7 59 72.9
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.9e-17 92.4 64 68.8
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.3e-15 85.5 39 92.3
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 8.8e-15 83.6 80 55.0
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 1.3e-13 79.7 65 53.8
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 1.6e-11 72.8 63 54.0


User provided reference genes

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