Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 2.4e-209 731.9 364 100.0
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.7e-181 639.4 364 88.5
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 4.8e-173 611.3 372 84.4
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 2.6e-171 605.5 364 84.1
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 6.1e-168 594.3 370 80.3
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 2.0e-163 579.3 370 79.5
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 2.3e-159 565.8 370 75.4
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 2.3e-159 565.8 371 74.9
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 5.2e-159 564.7 364 78.0
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 2.0e-158 562.8 370 73.8
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 3.4e-158 562.0 371 75.2
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 1.3e-157 560.1 370 75.7
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.3e-157 560.1 371 74.9
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 2.2e-157 559.3 372 75.0
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 3.1e-156 555.4 370 76.2
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 5.4e-156 554.7 370 74.6
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 4.5e-155 551.6 370 73.5
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 7.7e-155 550.8 369 75.1
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 1.3e-154 550.1 372 74.5
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 2.9e-154 548.9 370 74.9
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 5.0e-154 548.1 371 72.8
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 8.6e-154 547.4 364 74.5
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 5.7e-150 534.6 370 70.8
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 2.7e-147 525.8 368 72.3
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 2.7e-147 525.8 364 71.7
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 4.5e-147 525.0 375 69.1
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 5.9e-147 524.6 364 71.7
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 3.8e-146 521.9 368 70.7
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 1.1e-145 520.4 365 72.3
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.5e-145 520.0 370 68.6
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 1.9e-145 519.6 371 70.6
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 1.2e-144 516.9 370 70.0
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 8.0e-144 514.2 370 68.1
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.0e-143 513.8 369 68.6
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 3.1e-143 512.3 364 69.2
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 1.2e-142 510.4 370 67.8
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 1.5e-142 510.0 363 71.1
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 2.0e-142 509.6 370 68.1
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 5.8e-142 508.1 367 70.6
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 4.1e-140 501.9 366 68.6
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 7.0e-140 501.1 364 67.6
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 3.0e-138 495.7 368 69.0
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 6.6e-138 494.6 369 67.5
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 6.6e-138 494.6 367 66.5
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 6.6e-138 494.6 367 66.5
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 2.5e-137 492.7 370 68.4
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 4.3e-137 491.9 362 68.0
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 7.3e-137 491.1 370 67.0
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 2.1e-136 489.6 370 68.4
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 6.2e-136 488.0 340 71.2
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 1.8e-135 486.5 351 70.1
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 8.9e-135 484.2 373 67.3
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 5.8e-134 481.5 371 65.5
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 1.7e-133 479.9 372 65.3
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.7e-133 479.9 369 61.8
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 1.4e-132 476.9 344 71.2
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 4.1e-132 475.3 346 70.2
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 9.2e-132 474.2 370 61.4
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 3.0e-130 469.2 360 65.8
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 3.9e-130 468.8 364 64.3
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 5.1e-130 468.4 374 65.8
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 1.5e-129 466.8 396 61.6
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.5e-129 466.1 369 59.9
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 3.3e-129 465.7 370 60.5
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 6.2e-128 461.5 327 70.9
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 1.4e-127 460.3 375 65.3
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 6.8e-127 458.0 372 65.1
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 1.5e-126 456.8 379 64.4
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 1.3e-125 453.8 365 63.6
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 2.9e-125 452.6 370 62.4
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 8.3e-125 451.1 377 63.7
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 1.1e-124 450.7 350 65.4
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 1.9e-124 449.9 372 63.4
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 3.2e-124 449.1 372 63.4
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 7.1e-124 448.0 371 63.9
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 1.2e-123 447.2 371 62.8
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 3.5e-123 445.7 369 63.4
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 7.8e-123 444.5 374 63.4
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 7.8e-123 444.5 371 62.8
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 1.7e-122 443.4 372 63.2
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 2.3e-122 443.0 419 56.3
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 3.9e-122 442.2 329 66.3
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 6.6e-122 441.4 373 62.5
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 8.6e-122 441.0 374 62.3
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 1.1e-121 440.7 374 62.3
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 1.1e-121 440.7 384 60.2
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 1.5e-121 440.3 371 62.3
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 1.9e-121 439.9 372 62.6
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 1.9e-121 439.9 368 63.3
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 2.5e-121 439.5 321 66.0
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 2.5e-121 439.5 371 62.3
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 3.3e-121 439.1 373 62.5
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 4.3e-121 438.7 341 66.0
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 3.6e-120 435.6 381 61.9
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 4.7e-120 435.3 306 71.9
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 4.0e-119 432.2 372 61.8
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 5.2e-119 431.8 324 67.3
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 6.8e-119 431.4 347 61.1
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 2.0e-118 429.9 364 63.2
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 1.1e-116 424.1 366 60.9
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 6.0e-115 418.3 349 63.3
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 1.3e-114 417.2 349 62.8
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 2.5e-113 412.9 332 65.1
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 3.6e-112 409.1 351 61.8
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 2.4e-111 406.4 335 62.1
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 4.4e-110 402.1 371 57.7
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 4.9e-109 398.7 370 53.5
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 8.4e-109 397.9 370 53.5
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 1.9e-108 396.7 322 60.2
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 1.9e-108 396.7 349 60.7
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 1.2e-107 394.0 370 53.5
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 4.6e-107 392.1 385 54.8
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 8.7e-106 387.9 372 53.2
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.8e-104 382.9 367 52.0
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 6.2e-104 381.7 306 62.7
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 1.4e-103 380.6 385 54.8
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 1.3e-101 374.0 381 52.2
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.7e-101 373.6 391 50.6
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 1.2e-99 367.5 347 53.6
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.2e-93 346.7 376 49.5
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 2.5e-89 333.2 240 68.8
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 2.5e-89 333.2 474 43.7
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 9.0e-87 324.7 273 61.5
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 4.5e-86 322.4 294 58.2
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 2.2e-85 320.1 338 50.0
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 3.2e-84 316.2 287 58.2
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 4.2e-84 315.8 378 46.3
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 7.1e-84 315.1 298 59.1
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.0e-82 311.2 241 67.6
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 6.1e-75 285.4 259 60.2
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 8.8e-74 281.6 409 39.4
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 1.8e-71 273.9 380 40.8
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.0e-69 268.1 233 59.2
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 4.2e-68 262.7 379 39.1
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 5.5e-68 262.3 241 60.6
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 4.7e-67 259.2 249 57.4
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 7.2e-60 235.3 260 48.8
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 8.0e-59 231.9 213 54.0
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 2.0e-57 227.3 336 38.1
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 8.2e-56 221.9 204 60.3
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.2e-49 201.4 378 33.3
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 5.7e-49 199.1 115 79.1
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.4e-47 194.5 152 63.2
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 8.5e-45 185.3 137 64.2
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 6.6e-29 132.5 149 53.7
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 2.3e-26 124.0 74 75.7
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 8.3e-24 115.5 426 24.2
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 1.5e-20 104.8 200 30.0
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 7.3e-20 102.4 121 47.9
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 6.2e-19 99.4 73 68.5
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 5.1e-13 79.7 42 88.1
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 5.6e-12 76.3 78 52.6
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 4.7e-11 73.2 88 44.3
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 1.1e-10 72.0 51 62.7
C07p07230 Brassica napus HOM05D004815 ORTHO05D005742 3.2e-07 60.5 59 52.5


User provided reference genes

Program Settings