Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 3.1e-90 335.1 169 100.0
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 5.3e-90 334.3 169 99.4
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 6.0e-86 320.9 169 95.9
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 8.8e-69 263.8 168 77.4
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 1.5e-68 263.1 167 78.4
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 4.4e-68 261.5 168 76.2
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 4.8e-67 258.1 169 76.9
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 6.3e-67 257.7 167 76.6
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 8.2e-67 257.3 167 76.6
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.8e-66 256.1 167 76.6
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.2e-65 253.4 167 77.2
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 1.5e-65 253.1 169 73.4
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 2.0e-65 252.7 169 74.6
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 3.5e-65 251.9 167 76.6
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 1.0e-64 250.4 169 72.8
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 1.7e-64 249.6 169 74.6
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 1.7e-64 249.6 169 72.2
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 1.7e-64 249.6 168 73.2
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 2.2e-64 249.2 166 75.3
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 6.5e-64 247.7 169 71.6
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 6.5e-64 247.7 165 74.5
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 2.5e-63 245.7 169 70.4
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 3.2e-63 245.4 169 72.2
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 7.2e-63 244.2 169 71.6
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 7.2e-63 244.2 169 72.8
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 1.2e-62 243.4 168 72.0
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 1.2e-62 243.4 168 70.8
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 1.6e-62 243.0 168 72.0
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 2.1e-62 242.7 168 72.0
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 2.7e-62 242.3 168 73.2
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 2.7e-62 242.3 169 71.6
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 2.7e-62 242.3 165 72.1
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 6.1e-62 241.1 169 69.8
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 1.8e-61 239.6 168 70.8
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 1.8e-61 239.6 169 69.2
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 5.2e-61 238.0 169 69.8
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 6.7e-61 237.7 172 69.2
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 6.7e-61 237.7 168 70.2
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 8.8e-61 237.3 168 70.8
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 1.1e-60 236.9 169 71.6
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 1.1e-60 236.9 169 69.8
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 2.0e-60 236.1 168 69.6
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 2.0e-60 236.1 168 71.4
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 2.6e-60 235.7 169 69.2
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 2.6e-60 235.7 169 68.0
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 3.3e-60 235.3 165 72.7
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 3.3e-60 235.3 169 70.4
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 4.4e-60 235.0 169 66.9
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 4.4e-60 235.0 169 66.9
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 4.4e-60 235.0 169 66.9
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 4.4e-60 235.0 169 68.6
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 4.4e-60 235.0 169 66.9
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 4.4e-60 235.0 168 68.5
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 5.7e-60 234.6 169 71.0
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 5.7e-60 234.6 169 71.0
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 5.7e-60 234.6 169 71.0
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 5.7e-60 234.6 164 70.7
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 7.4e-60 234.2 168 68.5
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 1.3e-59 233.4 169 69.8
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 1.7e-59 233.0 161 73.9
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.7e-59 233.0 169 66.3
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 1.7e-59 233.0 164 67.7
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 1.7e-59 233.0 169 68.0
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 2.2e-59 232.6 195 63.1
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.8e-59 232.3 169 67.5
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 8.2e-59 230.7 191 62.8
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 8.2e-59 230.7 166 68.1
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 1.1e-58 230.3 169 67.5
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 1.2e-57 226.9 168 65.5
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 5.9e-57 224.6 206 60.7
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 1.0e-56 223.8 165 68.5
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 2.2e-56 222.6 169 66.3
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 2.2e-56 222.6 169 65.7
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 2.9e-56 222.2 156 72.4
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 2.9e-56 222.2 140 77.1
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 5.0e-56 221.5 155 70.3
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 3.2e-55 218.8 169 65.1
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.2e-54 216.9 193 57.5
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 4.7e-54 214.9 167 64.1
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 8.0e-54 214.2 169 64.5
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 2.3e-53 212.6 165 63.0
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 5.2e-53 211.5 165 63.0
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 4.4e-52 208.4 150 68.7
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 7.5e-52 207.6 139 71.2
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 7.5e-52 207.6 165 62.4
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 7.5e-52 207.6 168 58.9
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.3e-51 206.8 192 57.8
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 3.7e-51 205.3 141 68.8
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 2.4e-50 202.6 139 69.8
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 3.1e-50 202.2 152 62.5
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 4.1e-50 201.8 152 62.5
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 5.3e-50 201.4 152 61.8
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 5.3e-50 201.4 152 61.8
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 1.2e-49 200.3 167 61.1
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 1.6e-49 199.9 159 59.7
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 2.0e-49 199.5 176 60.8
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 5.9e-49 198.0 152 61.8
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 1.3e-48 196.8 152 61.2
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 1.7e-48 196.4 165 57.6
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.0e-48 194.9 168 55.4
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.0e-48 194.9 168 54.8
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.5e-47 192.6 168 54.8
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 4.2e-47 191.8 142 65.5
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.5e-47 191.4 168 54.2
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 5.5e-47 191.4 129 72.1
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 2.7e-46 189.1 130 70.8
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 3.6e-46 188.7 139 63.3
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 1.4e-45 186.8 138 63.8
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 5.2e-45 184.9 167 53.9
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 4.4e-44 181.8 152 55.3
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 1.7e-43 179.9 118 72.9
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 3.1e-42 175.6 120 70.0
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 4.1e-42 175.3 119 72.3
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 1.6e-41 173.3 124 66.9
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 1.0e-40 170.6 127 65.4
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 5.5e-39 164.9 114 71.1
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 7.2e-39 164.5 118 69.5
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 2.1e-38 162.9 118 66.1
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 1.5e-36 156.8 140 57.1
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 9.2e-34 147.5 155 50.3
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 2.9e-32 142.5 105 63.8
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 2.9e-32 142.5 169 55.0
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 1.1e-31 140.6 169 43.8
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.5e-31 140.2 125 57.6
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 3.3e-31 139.0 166 45.8
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 9.5e-31 137.5 165 46.7
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 1.2e-30 137.1 169 43.2
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 2.8e-30 136.0 90 71.1
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 3.6e-30 135.6 133 51.1
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 6.8e-29 131.3 130 56.2
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 8.3e-27 124.4 148 42.6
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 5.4e-26 121.7 120 48.3
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 7.0e-26 121.3 76 76.3
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 6.0e-25 118.2 124 51.6
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.0e-24 117.5 98 58.2
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 1.7e-24 116.7 80 78.8
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 6.6e-24 114.8 96 56.2
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 6.6e-24 114.8 96 56.2
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 6.6e-24 114.8 96 56.2
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 1.2e-22 110.5 73 75.3
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 2.1e-22 109.8 86 68.6
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 2.1e-22 109.8 73 68.5
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.6e-22 109.0 145 42.8
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 4.6e-17 92.0 101 47.5
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 3.9e-16 89.0 77 59.7
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 1.1e-15 87.4 54 68.5
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 2.3e-13 79.7 169 34.9
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 2.0e-12 76.6 54 72.2
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 9.9e-12 74.3 50 74.0
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 9.9e-12 74.3 61 60.7
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 1.3e-11 73.9 49 73.5
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 3.7e-11 72.4 54 68.5
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 1.3e-08 63.9 60 50.0
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 2.5e-07 59.7 39 71.8
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 5.6e-07 58.5 48 62.5
QL12p027355 Quercus lobata HOM05D001289 ORTHO05D002298 4.7e-06 55.5 34 73.5


User provided reference genes

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