Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 1.4e-60 236.1 123 100.0
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 5.1e-42 174.5 132 73.5
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 1.4e-39 166.4 100 83.0
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 2.6e-38 162.2 100 80.0
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 3.4e-38 161.8 112 75.0
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 3.4e-38 161.8 116 70.7
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 1.3e-37 159.8 119 69.7
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 2.2e-37 159.1 88 86.4
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 3.8e-37 158.3 100 78.0
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 3.8e-37 158.3 100 79.0
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 6.4e-37 157.5 100 77.0
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 6.4e-37 157.5 100 77.0
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 6.4e-37 157.5 109 74.3
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 1.1e-36 156.8 104 76.0
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 1.4e-36 156.4 116 70.7
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 1.4e-36 156.4 88 84.1
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 1.4e-36 156.4 131 65.6
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 1.4e-36 156.4 131 64.1
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 1.9e-36 156.0 100 76.0
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 1.9e-36 156.0 116 69.8
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 2.4e-36 155.6 125 65.6
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 3.2e-36 155.2 100 78.0
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 4.2e-36 154.8 89 85.4
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 5.5e-36 154.5 121 67.8
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 7.1e-36 154.1 115 69.6
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 7.1e-36 154.1 100 75.0
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 7.1e-36 154.1 115 69.6
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 9.3e-36 153.7 116 68.1
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.2e-35 153.3 100 75.0
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 1.2e-35 153.3 121 67.8
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 1.6e-35 152.9 88 83.0
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 1.6e-35 152.9 88 84.1
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 1.6e-35 152.9 88 83.0
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 1.6e-35 152.9 113 71.7
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 2.1e-35 152.5 100 75.0
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 2.1e-35 152.5 88 84.1
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 2.1e-35 152.5 100 73.0
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 2.1e-35 152.5 120 67.5
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 2.1e-35 152.5 120 67.5
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 2.1e-35 152.5 100 76.0
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 2.1e-35 152.5 116 67.2
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 2.1e-35 152.5 116 66.4
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.7e-35 152.1 100 75.0
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 2.7e-35 152.1 122 66.4
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 2.7e-35 152.1 106 71.7
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 2.7e-35 152.1 113 72.6
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 3.5e-35 151.8 120 63.3
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 6.0e-35 151.0 88 85.2
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 6.0e-35 151.0 120 65.8
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 6.0e-35 151.0 126 64.3
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 6.0e-35 151.0 100 75.0
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 7.9e-35 150.6 118 68.6
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 7.9e-35 150.6 88 84.1
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 1.0e-34 150.2 88 80.7
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 1.0e-34 150.2 113 69.0
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 1.0e-34 150.2 88 78.4
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 1.3e-34 149.8 109 72.5
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 1.3e-34 149.8 109 72.5
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 1.3e-34 149.8 90 81.1
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 1.8e-34 149.4 120 63.3
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 1.8e-34 149.4 90 81.1
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 2.3e-34 149.1 100 73.0
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 2.3e-34 149.1 119 64.7
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.3e-34 149.1 113 68.1
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 2.3e-34 149.1 117 66.7
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 2.3e-34 149.1 120 65.0
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 2.3e-34 149.1 88 80.7
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 3.0e-34 148.7 88 81.8
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 3.0e-34 148.7 122 64.8
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 3.0e-34 148.7 116 68.1
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 3.9e-34 148.3 105 70.5
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 3.9e-34 148.3 124 62.9
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 5.1e-34 147.9 121 63.6
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 5.1e-34 147.9 202 49.5
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 6.7e-34 147.5 89 80.9
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 8.7e-34 147.1 120 64.2
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 1.5e-33 146.4 128 60.9
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 1.5e-33 146.4 113 67.3
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 1.9e-33 146.0 104 72.1
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 1.9e-33 146.0 109 69.7
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 2.5e-33 145.6 123 64.2
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 2.5e-33 145.6 100 72.0
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 4.3e-33 144.8 100 69.0
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 4.3e-33 144.8 114 64.9
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 4.3e-33 144.8 120 65.0
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 5.6e-33 144.4 93 75.3
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 7.4e-33 144.1 117 67.5
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 7.4e-33 144.1 123 61.0
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 9.6e-33 143.7 146 57.5
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 1.3e-32 143.3 128 62.5
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 1.3e-32 143.3 127 60.6
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 1.3e-32 143.3 88 75.0
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 1.6e-32 142.9 121 62.0
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 1.6e-32 142.9 115 65.2
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 2.8e-32 142.1 125 62.4
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 2.8e-32 142.1 93 73.1
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 2.8e-32 142.1 88 73.9
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 3.7e-32 141.7 120 61.7
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 6.2e-32 141.0 121 62.0
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 6.2e-32 141.0 119 63.0
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 6.2e-32 141.0 117 66.7
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 1.8e-31 139.4 122 61.5
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 2.4e-31 139.0 121 62.8
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 4.0e-31 138.3 130 56.9
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 2.0e-30 136.0 107 66.4
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 2.0e-30 136.0 112 63.4
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 4.5e-30 134.8 70 90.0
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 5.8e-30 134.4 79 79.7
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 1.0e-29 133.7 122 58.2
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 2.2e-29 132.5 94 69.1
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 2.2e-29 132.5 98 67.3
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 3.8e-29 131.7 121 57.0
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 4.9e-29 131.3 94 68.1
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 4.9e-29 131.3 94 68.1
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 4.9e-29 131.3 94 68.1
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 4.9e-29 131.3 94 68.1
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 8.4e-29 130.6 98 66.3
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 8.4e-29 130.6 121 57.0
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 1.1e-28 130.2 121 56.2
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 2.5e-28 129.0 116 59.5
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 1.2e-27 126.7 88 67.0
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 7.9e-27 124.0 83 75.9
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 1.3e-26 123.2 152 48.7
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 5.1e-26 121.3 110 54.5
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 8.7e-26 120.6 88 67.0
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 1.5e-25 119.8 114 56.1
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 4.1e-23 111.7 113 50.4
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 5.3e-23 111.3 121 50.4
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 6.9e-23 110.9 76 71.1
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 4.5e-22 108.2 127 49.6
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 5.9e-22 107.8 74 71.6
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 3.7e-16 88.6 65 64.6
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 1.8e-15 86.3 85 57.6
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 4.7e-11 71.6 40 87.5
Rhsim03G0098500 Rhododendron simsii HOM05D005488 ORTHO05D006568 1.4e-10 70.1 40 82.5
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 3.9e-10 68.6 70 54.3
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 8.8e-10 67.4 71 50.7
MD00G1150500 Malus domestica HOM05D005488 ORTHO05D006568 7.4e-09 64.3 37 78.4
Phvul.006G055900 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 1.1e-07 60.5 84 45.2
Aa31LG1G13960 Aethionema arabicum HOM05D002686 ORTHO05D003222 2.6e-06 55.8 124 31.5
EL10Ac8g19011 Beta vulgaris HOM05D002686 ORTHO05D003222 5.9e-06 54.7 96 33.3
CARHR192090 Cardamine hirsuta HOM05D002686 ORTHO05D003222 7.7e-06 54.3 130 30.0


User provided reference genes

Program Settings