Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 5.2e-93 344.4 172 100.0
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 5.9e-89 330.9 172 96.5
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 6.6e-72 274.2 168 81.5
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 2.5e-71 272.3 168 78.6
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 8.1e-70 267.3 168 78.0
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 8.1e-70 267.3 165 78.8
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 8.1e-70 267.3 170 75.9
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 3.1e-69 265.4 168 76.2
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 8.9e-69 263.8 168 76.8
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 5.8e-68 261.2 168 76.2
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 9.9e-68 260.4 168 75.0
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.3e-67 260.0 168 76.2
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 6.4e-67 257.7 171 73.1
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.1e-66 256.9 168 76.2
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.2e-65 253.4 168 75.6
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 1.2e-65 253.4 171 73.1
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.6e-65 253.1 168 76.2
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 7.8e-65 250.8 166 74.1
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 1.3e-64 250.0 168 75.0
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 2.3e-64 249.2 168 73.2
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 5.1e-64 248.1 164 74.4
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 8.6e-64 247.3 165 73.3
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 8.6e-64 247.3 166 74.7
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.1e-63 246.9 168 74.4
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.5e-63 246.5 171 70.8
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.5e-63 246.5 168 74.4
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 2.5e-63 245.7 171 70.8
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 3.3e-63 245.4 171 70.2
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 4.3e-63 245.0 165 73.9
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 4.7e-62 241.5 165 70.9
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 4.7e-62 241.5 167 70.1
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 8.1e-62 240.7 168 69.6
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 1.1e-61 240.4 167 70.1
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.8e-61 239.6 168 70.2
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.8e-61 239.6 167 69.5
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 2.4e-61 239.2 167 70.1
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 5.2e-61 238.0 168 69.6
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 6.9e-61 237.7 165 70.3
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 1.5e-60 236.5 168 69.6
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 2.0e-60 236.1 165 70.3
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 2.6e-60 235.7 164 69.5
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 4.4e-60 235.0 167 68.9
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 5.8e-60 234.6 165 70.9
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 7.6e-60 234.2 164 70.7
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.3e-59 233.4 168 69.6
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 2.2e-59 232.6 165 68.5
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 6.4e-59 231.1 161 69.6
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 8.4e-59 230.7 168 64.9
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 1.1e-58 230.3 167 68.3
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 3.2e-58 228.8 165 67.9
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 4.2e-58 228.4 164 68.9
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 5.4e-58 228.0 168 67.3
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 7.1e-58 227.6 169 66.9
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 9.3e-58 227.3 168 68.5
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 1.6e-57 226.5 163 69.9
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 1.6e-57 226.5 163 70.6
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 2.1e-57 226.1 168 66.1
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 2.1e-57 226.1 163 69.3
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 2.7e-57 225.7 165 67.9
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 2.7e-57 225.7 171 62.6
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 6.0e-57 224.6 168 66.1
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.0e-56 223.8 126 87.3
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 1.3e-56 223.4 163 69.3
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.3e-56 223.4 165 68.5
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 1.3e-56 223.4 166 68.1
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 3.0e-56 222.2 171 64.3
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 3.9e-56 221.9 166 65.1
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 5.1e-56 221.5 157 70.1
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 6.6e-56 221.1 165 65.5
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 6.6e-56 221.1 164 66.5
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 6.6e-56 221.1 168 66.1
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 1.1e-55 220.3 168 66.7
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.9e-55 219.5 165 66.7
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 4.3e-55 218.4 163 66.9
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 5.6e-55 218.0 159 67.9
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 9.6e-55 217.2 168 63.1
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.3e-54 216.9 168 63.7
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 2.8e-54 215.7 170 61.8
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 6.2e-54 214.5 165 66.1
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 6.2e-54 214.5 169 66.3
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 1.1e-53 213.8 159 66.0
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 1.4e-53 213.4 163 66.3
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.8e-53 213.0 164 66.5
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 4.0e-53 211.8 168 64.9
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 4.0e-53 211.8 164 66.5
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 4.0e-53 211.8 166 62.7
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 5.3e-53 211.5 158 66.5
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 5.3e-53 211.5 165 65.5
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 9.0e-53 210.7 164 65.9
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 9.0e-53 210.7 168 64.9
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 1.2e-52 210.3 173 61.8
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 1.5e-52 209.9 164 66.5
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.5e-52 209.9 164 66.5
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.5e-52 209.9 171 64.3
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 2.0e-52 209.5 166 64.5
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 2.0e-52 209.5 166 64.5
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 2.6e-52 209.1 166 64.5
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 4.5e-52 208.4 166 64.5
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 4.5e-52 208.4 167 64.1
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 4.5e-52 208.4 164 67.1
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 5.8e-52 208.0 172 64.0
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 2.9e-51 205.7 166 63.3
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 1.4e-50 203.4 163 63.8
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 1.9e-50 203.0 165 59.4
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 1.6e-49 199.9 130 75.4
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 2.1e-49 199.5 163 61.3
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.7e-49 199.1 167 60.5
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 3.5e-49 198.7 166 62.0
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 3.9e-48 195.3 159 62.3
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 1.1e-47 193.7 165 60.6
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 1.1e-47 193.7 165 60.6
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 7.4e-47 191.0 126 75.4
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 9.0e-45 184.1 161 59.0
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 6.4e-43 177.9 124 65.3
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 4.2e-42 175.3 126 69.8
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 5.5e-42 174.9 160 56.9
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 9.3e-42 174.1 169 56.2
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 6.0e-41 171.4 169 55.6
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 6.0e-41 171.4 169 55.6
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 5.6e-39 164.9 163 58.3
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.6e-38 163.3 166 51.8
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 1.6e-38 163.3 132 63.6
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 5.3e-37 158.3 169 52.1
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 6.9e-37 157.9 127 63.8
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 2.2e-35 152.9 129 59.7
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 3.8e-35 152.1 112 65.2
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.9e-34 149.8 119 61.3
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 2.5e-34 149.4 136 50.7
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.6e-33 146.7 127 56.7
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 2.1e-33 146.4 171 52.0
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 2.3e-32 142.9 161 49.1
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 2.3e-32 142.9 98 66.3
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 3.0e-32 142.5 157 49.0
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 6.7e-32 141.4 162 45.7
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 8.7e-32 141.0 125 58.4
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 3.3e-31 139.0 83 79.5
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 3.1e-29 132.5 155 45.8
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 5.5e-26 121.7 167 47.3
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 2.3e-24 116.3 159 39.6
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 2.3e-24 116.3 121 45.5
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 3.0e-24 115.9 135 43.0
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 9.7e-23 110.9 90 58.9
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 1.1e-21 107.5 66 72.7
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 3.4e-20 102.4 148 37.8
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 8.5e-19 97.8 67 76.1
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 2.5e-18 96.3 71 57.7
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 7.2e-18 94.7 115 48.7
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 7.2e-18 94.7 65 76.9
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 6.7e-16 88.2 64 68.8
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 5.7e-15 85.1 69 53.6
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 6.3e-14 81.6 61 68.9
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 8.2e-14 81.3 57 73.7
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 8.2e-14 81.3 57 73.7
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 3.1e-13 79.3 84 44.0
TAR371G0914 Trochodendron aralioides HOM05D004294 ORTHO05D004899 3.1e-13 79.3 44 75.0
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.5e-12 77.0 56 69.6
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.0e-12 76.6 64 62.5
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 2.0e-12 76.6 94 44.7
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.9e-11 72.8 82 45.1
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.1e-10 70.9 89 49.4
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 2.5e-10 69.7 62 61.3
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 2.5e-10 69.7 60 51.7
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 6.7e-08 61.6 99 37.4
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 1.1e-07 60.8 60 55.0
arahy.Tifrunner.gnm1.ann1.L9EVLZ Arachis hypogaea HOM05D047065 ORTHO05D004899 2.0e-07 60.1 116 34.5
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 2.6e-07 59.7 104 35.6
AUR62010916 Chenopodium quinoa HOM05D004294 ORTHO05D004899 5.7e-07 58.5 42 69.0
Sabra09G0017000 Salix brachista HOM05D004294 ORTHO05D004899 9.7e-07 57.8 82 47.6
Sp4g08150 Schrenkiella parvula HOM05D000096 ORTHO05D000045 6.3e-06 55.1 39 66.7


User provided reference genes

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