Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1721.1 862 100.0
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1600.9 865 93.6
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1596.3 862 92.6
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1551.2 912 86.5
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1495.7 863 87.0
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1489.2 867 86.7
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1483.4 862 86.8
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1483.0 865 86.5
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1480.7 855 86.3
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1463.7 854 85.2
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1457.2 846 84.8
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1454.5 857 85.3
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1453.0 864 84.6
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1451.4 865 84.2
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1450.6 864 84.4
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1450.3 866 84.6
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1448.7 866 83.9
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1448.3 866 84.5
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1448.0 866 84.5
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1445.3 852 84.5
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1441.0 827 87.1
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1439.9 841 86.0
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1438.7 860 84.1
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1438.7 853 84.1
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1438.7 853 84.2
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1435.6 861 84.0
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1429.8 866 82.9
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1427.9 857 83.3
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1423.7 859 83.2
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1423.3 859 83.1
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1421.8 863 82.9
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1421.4 895 80.4
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1420.6 875 82.1
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1420.2 853 83.6
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1419.1 853 83.5
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1418.7 859 82.9
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1418.3 863 82.0
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1417.9 859 82.9
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1412.5 837 84.6
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1406.0 857 82.4
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1404.0 853 82.8
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1402.1 850 82.9
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1401.0 853 82.9
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1399.4 848 83.1
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1397.9 849 82.2
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1396.7 865 81.7
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1396.3 852 82.5
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1396.3 853 82.1
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1396.3 848 82.8
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1395.6 853 82.6
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1395.2 858 81.7
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1391.7 858 81.7
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1385.2 859 80.7
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1384.8 850 81.3
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1384.4 848 82.0
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1384.4 857 81.4
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1382.1 838 82.5
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1379.0 846 82.0
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1378.2 802 85.2
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1377.8 830 82.4
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1377.5 836 83.3
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1376.7 825 83.0
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1374.8 810 84.2
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1372.8 865 80.9
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1371.7 844 82.0
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1370.5 833 81.8
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1369.8 838 81.9
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1369.4 887 75.3
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1365.5 835 82.4
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1364.7 838 81.7
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1358.6 836 81.8
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1355.1 885 77.6
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1354.0 853 80.2
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1353.6 836 81.1
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1352.4 894 78.2
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1351.3 863 80.0
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1345.1 835 81.8
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1342.4 854 79.5
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1340.5 851 79.0
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1339.3 837 80.0
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1336.2 895 75.4
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1333.5 833 80.8
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1331.2 844 79.3
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1330.1 841 80.1
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1329.7 836 80.6
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1325.5 836 80.4
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1323.9 822 80.4
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1323.9 870 78.0
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1322.0 842 80.0
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1321.6 853 78.2
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1318.1 849 78.2
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1317.8 861 78.2
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1317.0 835 81.1
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1315.4 866 76.9
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1314.3 844 79.5
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1314.3 844 79.5
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1314.3 834 78.8
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1313.5 815 81.6
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1310.8 844 79.3
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1310.4 852 78.1
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1310.4 852 78.1
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1310.4 852 78.1
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1310.4 852 78.1
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1308.9 834 79.4
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1307.0 829 80.5
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1305.4 818 80.6
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1305.0 813 81.1
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1303.9 849 79.3
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1303.1 823 79.6
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1302.7 818 80.4
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1302.3 849 79.2
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1301.2 776 84.3
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1298.9 828 78.0
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1295.8 835 79.6
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1290.0 823 77.8
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1280.8 777 82.5
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1276.5 819 78.0
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1276.5 860 76.7
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1269.6 825 76.7
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1267.7 816 78.8
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1267.7 826 78.1
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1263.4 818 79.2
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1258.4 818 77.5
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1253.8 816 77.6
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1253.8 717 86.1
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1253.0 824 78.8
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1252.7 876 74.7
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1251.9 825 73.0
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1232.6 829 76.7
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1228.0 839 76.8
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1225.7 835 76.0
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1225.7 757 81.0
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1223.4 838 75.4
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1215.7 822 74.9
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1199.5 887 70.5
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1185.2 818 72.2
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1177.9 776 75.9
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1177.5 822 72.6
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1147.9 736 80.6
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1143.6 828 70.5
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1141.3 817 71.1
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 5.9e-312 1074.3 833 69.3
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 1.1e-295 1020.0 592 82.4
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.9e-285 985.3 845 65.1
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 1.2e-278 963.4 630 71.3
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 6.5e-277 957.6 555 87.7
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 2.7e-267 925.6 568 78.0
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 8.2e-264 914.1 528 83.5
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 5.5e-191 672.2 708 55.5
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 1.1e-151 541.6 460 59.6
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 3.7e-147 526.6 361 78.9
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 4.1e-146 523.1 327 77.1
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 2.5e-111 407.5 317 71.6
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 5.1e-104 383.3 264 71.2
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.1e-101 374.0 397 54.9
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.8e-93 348.2 581 46.1
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 4.9e-67 260.4 152 82.2
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 2.9e-59 234.6 156 75.6
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 3.5e-44 184.5 163 57.7
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 5.0e-35 154.1 477 28.9
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.0e-32 144.8 123 56.1
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 6.7e-32 143.7 466 28.1
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 2.6e-31 141.7 76 88.2
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 5.3e-29 134.0 477 26.6
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 4.5e-28 131.0 68 92.6
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.1e-26 126.3 472 27.5
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 1.5e-26 125.9 439 28.2
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 1.2e-25 122.9 74 77.0
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.8e-24 119.0 96 64.6
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-17 95.9 266 28.6
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 1.0e-16 93.2 220 31.8
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 4.0e-16 91.3 147 39.5
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 9.2e-13 80.1 83 48.2
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-08 65.5 70 47.1
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 2.6e-07 62.0 38 78.9


User provided reference genes

Program Settings